Cp4.1LG01g12810 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g12810
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Homeobox protein
Location	Cp4.1LG01 : 8624048 .. 8624933 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCTAAAACGACCCATTTCCTACCATTGCCTGAATCTCTCCCCTCTCTATGGATCTCCGATTCTTGCTCTTCCATGGAAGGTGAATTCTCCCAACCACAAGTGAAGGCAGATCGAAACCGAGGCGGCAAGAAACGAAGGCTCACACTGGATCAAGTTCGGATGCTTGAGAGAACTTTTAATGCTGAAAACAAGCTTGAACATGAGAGGAAGGTTCAAATTGCAGAGGAGATTGGTTTACGGCCTCGCCAAGTTGCAGTTTGGTTCCAGAATCGAAGAGCTCGATCCAAGACCAAGAAGATCGAAATTGATTATGAATCATTGAATGCTGAATATGATAAGCTCAAGAATGATTTTGACAGTCTTTTAAAAGTGAATCATGAACTGAAAGCAGAGGTATGGCCTCTGTTTCTGCCATTAAAACCTCCAGTTCTGTAATTGATATTATCCTCATTGTCGTTTAATCACGGTTTTGTACTAGGTTGATCAGCTGAGAGACAAATGGGCTGCTACTGAGAAGATGAAAAATCCTTATGAACCAGTTGGAGATTTTTACAAGGTGGAAATGGGGTCATCCAGACAGGAACAGGGTAGCCGAAGCTCAAGCAAAAGTGATGTCTTTTATGCTGAGAGCCCGACCAGGGAAAACCAGTCACGGTCGGGGAATTTCTTGCGAGATGAAGAAGAAGATGATGAATTAGGGTACTTGGGGATACTAGAAGATGAACTTTCTGCTGATGAGCTCATGGATTCCTTTAATGTTATGAGTAGTGCAGCTGAAGATCAATCTTTCTGTTTCTGGTCTTTTTGAAATGAAGTTTAATTCTCACTAAAATGTTTTGAGTGTATTGAAGCTTAGTAATAAAAGAGTCATTTCGCTATT

mRNA sequence

ATGGATTCTAAAACGACCCATTTCCTACCATTGCCTGAATCTCTCCCCTCTCTATGGATCTCCGATTCTTGCTCTTCCATGGAAGGTGAATTCTCCCAACCACAAGTGAAGGCAGATCGAAACCGAGGCGGCAAGAAACGAAGGCTCACACTGGATCAAGTTCGGATGCTTGAGAGAACTTTTAATGCTGAAAACAAGCTTGAACATGAGAGGAAGGTTGATCAGCTGAGAGACAAATGGGCTGCTACTGAGAAGATGAAAAATCCTTATGAACCAGTTGGAGATTTTTACAAGGTGGAAATGGGGTCATCCAGACAGGAACAGGGTAGCCGAAGCTCAAGCAAAAGTGATGTCTTTTATGCTGAGAGCCCGACCAGGGAAAACCAGTCACGGTCGGGGAATTTCTTGCGAGATGAAGAAGAAGATGATGAATTAGGGTACTTGGGGATACTAGAAGATGAACTTTCTGCTGATGAGCTCATGGATTCCTTTAATGTTATGAGTAGTGCAGCTGAAGATCAATCTTTCTGTTTCTGGTCTTTTTGAAATGAAGTTTAATTCTCACTAAAATGTTTTGAGTGTATTGAAGCTTAGTAATAAAAGAGTCATTTCGCTATT

Coding sequence (CDS)

ATGGATTCTAAAACGACCCATTTCCTACCATTGCCTGAATCTCTCCCCTCTCTATGGATCTCCGATTCTTGCTCTTCCATGGAAGGTGAATTCTCCCAACCACAAGTGAAGGCAGATCGAAACCGAGGCGGCAAGAAACGAAGGCTCACACTGGATCAAGTTCGGATGCTTGAGAGAACTTTTAATGCTGAAAACAAGCTTGAACATGAGAGGAAGGTTGATCAGCTGAGAGACAAATGGGCTGCTACTGAGAAGATGAAAAATCCTTATGAACCAGTTGGAGATTTTTACAAGGTGGAAATGGGGTCATCCAGACAGGAACAGGGTAGCCGAAGCTCAAGCAAAAGTGATGTCTTTTATGCTGAGAGCCCGACCAGGGAAAACCAGTCACGGTCGGGGAATTTCTTGCGAGATGAAGAAGAAGATGATGAATTAGGGTACTTGGGGATACTAGAAGATGAACTTTCTGCTGATGAGCTCATGGATTCCTTTAATGTTATGAGTAGTGCAGCTGAAGATCAATCTTTCTGTTTCTGGTCTTTTTGA

Protein sequence

MDSKTTHFLPLPESLPSLWISDSCSSMEGEFSQPQVKADRNRGGKKRRLTLDQVRMLERTFNAENKLEHERKVDQLRDKWAATEKMKNPYEPVGDFYKVEMGSSRQEQGSRSSSKSDVFYAESPTRENQSRSGNFLRDEEEDDELGYLGILEDELSADELMDSFNVMSSAAEDQSFCFWSF

Homology

[Close]

BLAST of Cp4.1LG01g12810 vs. TrEMBL
Match: A0A0A0KVU6_CUCSA (Homeobox protein OS=Cucumis sativus GN=Csa_5G604260 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.9e-31
Identity = 86/147 (58.50%), Postives = 102/147 (69.39%), Query Frame = 1


Query: 57  LERTFNAENKLEHERK--VDQLRDKWAATEKMKNPYEPVGD------------------- 116
           L+  F++   + HE K  VDQLR  WAA EKMKN +EPVG                    
Sbjct: 110 LKSDFDSLLNMNHELKAEVDQLRTTWAAVEKMKNHFEPVGVEAMDSSVTKLEKANAKTMG 169

Query: 117 --FYKVEMGSSRQEQGSRSSSKSDVFYAESPTRENQSRSGNFLRDEEEDDELGYLGILED 176
              YKV+MGSSR E+GS SSSKSD FY+ESPTR+NQS+S NFL+DEE  DELG LG LED
Sbjct: 170 EILYKVQMGSSRHEEGSLSSSKSDGFYSESPTRDNQSKSANFLQDEE--DELGCLGKLED 229

Query: 177 ELSADELMDSFNVMSSAAEDQSFCFWS 181
           ELSA+ELM+SFN++SSA E+QSFCFWS
Sbjct: 230 ELSANELMNSFNILSSAVENQSFCFWS 254

[Close]

BLAST of Cp4.1LG01g12810 vs. NCBI nr
Match: gi|449434833|ref|XP_004135200.1| (PREDICTED: homeobox-leucine zipper protein HAT5 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 4.2e-31
Identity = 86/147 (58.50%), Postives = 102/147 (69.39%), Query Frame = 1


Query: 57  LERTFNAENKLEHERK--VDQLRDKWAATEKMKNPYEPVGD------------------- 116
           L+  F++   + HE K  VDQLR  WAA EKMKN +EPVG                    
Sbjct: 110 LKSDFDSLLNMNHELKAEVDQLRTTWAAVEKMKNHFEPVGVEAMDSSVTKLEKANAKTMG 169

Query: 117 --FYKVEMGSSRQEQGSRSSSKSDVFYAESPTRENQSRSGNFLRDEEEDDELGYLGILED 176
              YKV+MGSSR E+GS SSSKSD FY+ESPTR+NQS+S NFL+DEE  DELG LG LED
Sbjct: 170 EILYKVQMGSSRHEEGSLSSSKSDGFYSESPTRDNQSKSANFLQDEE--DELGCLGKLED 229

Query: 177 ELSADELMDSFNVMSSAAEDQSFCFWS 181
           ELSA+ELM+SFN++SSA E+QSFCFWS
Sbjct: 230 ELSANELMNSFNILSSAVENQSFCFWS 254

[Close]

BLAST of Cp4.1LG01g12810 vs. NCBI nr
Match: gi|659090987|ref|XP_008446309.1| (PREDICTED: homeobox-leucine zipper protein ATHB-16 [Cucumis melo])

HSP 1 Score: 142.9 bits (359), Expect = 5.5e-31
Identity = 88/148 (59.46%), Postives = 103/148 (69.59%), Query Frame = 1


Query: 57  LERTFNAENKLEHERK--VDQLRDKWAATEKMKNPYEPVGD------------------- 116
           L+  F++   + HE K  VDQLR KWAA EKMKN +EPVG                    
Sbjct: 109 LKSDFDSLLNMNHELKAEVDQLRAKWAAMEKMKNHFEPVGVEAMVSSVTELEKAKAKTMG 168

Query: 117 --FYKVEMGSSRQE-QGSRSSSKSDVFYAESPTRENQSRSGNFLRDEEEDDELGYLGILE 176
              Y+V+MGSSR E +GS SSSKSD FY+ESPTRENQS+S NFL+DEE  DELGYL  LE
Sbjct: 169 EILYEVQMGSSRHELEGSLSSSKSDCFYSESPTRENQSKSANFLQDEE--DELGYLEKLE 228

Query: 177 DELSADELMDSFNVMSSAAEDQSFCFWS 181
           DELSADELM+SFN++SSA E+QSFCFWS
Sbjct: 229 DELSADELMNSFNILSSAVENQSFCFWS 254

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g12810 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g12810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVU6_CUCSA	2.9e-31	58.50	Homeobox protein OS=Cucumis sativus GN=Csa_5G604260 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g12810 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g12810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449434833\|ref\|XP_004135200.1\|	4.2e-31	58.50	PREDICTED: homeobox-leucine zipper protein HAT5 [Cucumis sativus]	[more]
gi\|659090987\|ref\|XP_008446309.1\|	5.5e-31	59.46	PREDICTED: homeobox-leucine zipper protein ATHB-16 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006471	protein ADP-ribosylation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003950	NAD+ ADP-ribosyltransferase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g12810.1	Cp4.1LG01g12810.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g12810	Cucsa.285390	Cucumber (Gy14) v1	cgycpeB0754
Cp4.1LG01g12810	CmaCh04G016280	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g12810	Cla010153	Watermelon (97103) v1	cpewmB432
Cp4.1LG01g12810	Csa5G604260	Cucumber (Chinese Long) v2	cpecuB416
Cp4.1LG01g12810	MELO3C012064	Melon (DHL92) v3.5.1	cpemeB377
Cp4.1LG01g12810	ClCG05G024620	Watermelon (Charleston Gray)	cpewcgB393
Cp4.1LG01g12810	CSPI05G23390	Wild cucumber (PI 183967)	cpecpiB415
Cp4.1LG01g12810	Lsi04G004640	Bottle gourd (USVL1VR-Ls)	cpelsiB360
Cp4.1LG01g12810	MELO3C012064.2	Melon (DHL92) v3.6.1	cpemedB437
Cp4.1LG01g12810	CsaV3_5G032330	Cucumber (Chinese Long) v3	cpecucB0518
Cp4.1LG01g12810	Bhi07G001313	Wax gourd	cpewgoB0568
Cp4.1LG01g12810	CsGy5G022910	Cucumber (Gy14) v2	cgybcpeB626
Cp4.1LG01g12810	Carg01731	Silver-seed gourd	carcpeB1177
Cp4.1LG01g12810	Carg17242	Silver-seed gourd	carcpeB0148

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g12810	Cucurbita pepo (Zucchini)	cpecpeB034
Cp4.1LG01g12810	Cucurbita pepo (Zucchini)	cpecpeB203
Cp4.1LG01g12810	Cucurbita pepo (Zucchini)	cpecpeB346
Cp4.1LG01g12810	Cucurbita maxima (Rimu)	cmacpeB432
Cp4.1LG01g12810	Cucurbita moschata (Rifu)	cmocpeB395
Cp4.1LG01g12810	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g12810	Watermelon (97103) v1	cpewmB444
Cp4.1LG01g12810	Cucumber (Gy14) v2	cgybcpeB061
Cp4.1LG01g12810	Cucumber (Gy14) v2	cgybcpeB645
Cp4.1LG01g12810	Melon (DHL92) v3.6.1	cpemedB421
Cp4.1LG01g12810	Melon (DHL92) v3.6.1	cpemedB459
Cp4.1LG01g12810	Cucumber (Chinese Long) v3	cpecucB0470
Cp4.1LG01g12810	Cucumber (Chinese Long) v3	cpecucB0537
Cp4.1LG01g12810	Wax gourd	cpewgoB0507
Cp4.1LG01g12810	Wax gourd	cpewgoB0551
Cp4.1LG01g12810	Wax gourd	cpewgoB0581