Cp4.1LG01g12600 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g12600
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRibonuclease P
LocationCp4.1LG01 : 8704662 .. 8705276 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCTCTACTTCCATCTTCTCACCCACCGCCGCCACCGCTGCCGCCGTCATCTCCTCCTCCTCCTCCTCCTCCTCTACCCACCGACCACTGTTATACAATTTCCCCTCAAAGATCACGACACAATTCAACAGACCCACCACCCGCATCCTCGTCTCCTCCTCCTCCTCCTCCTCCTCCACCAGCACTTCTCGCGCCGCCGCTGCCGCTTCGAAAAACGCCGCCGAGGAAATCGTGTTCTTCGACGGGGGCGCTCACTATGGCGACCTTGTAGCTAACCTTCTTCTGGGTTTTACTCTTCTATGGCTGCCCTTAACTGTGGCCGCAGTTTCCAGGGCGTTTAACCTCAGGTACAGATTCACCAACCTGCGGGTCACGGTCATTTCAGGACTGACGGGTGAGGACAGAAGTGATTTCTCGTACCAGGTGATCAAGGACGTTCAGGTGGTGCCGCGTTTCATTGGGGAATGGGGTGACGTTGTGATCACTCTCAAGGACGGCACCAAAGTGGATCTTAGGAGCGTCCCCAAGTTCAGAGAGATCGCCAAATACTGTCTCTCAATGGCTGATAAACCGGCTGTTCCAAAAGAGAGTGGCCCTAAAGGATTTTAG

mRNA sequence

ATGGCCGCCTCTACTTCCATCTTCTCACCCACCGCCGCCACCGCTGCCGCCGTCATCTCCTCCTCCTCCTCCTCCTCCTCTACCCACCGACCACTGTTATACAATTTCCCCTCAAAGATCACGACACAATTCAACAGACCCACCACCCGCATCCTCGTCTCCTCCTCCTCCTCCTCCTCCTCCACCAGCACTTCTCGCGCCGCCGCTGCCGCTTCGAAAAACGCCGCCGAGGAAATCGTGTTCTTCGACGGGGGCGCTCACTATGGCGACCTTGTAGCTAACCTTCTTCTGGGTTTTACTCTTCTATGGCTGCCCTTAACTGTGGCCGCAGTTTCCAGGGCGTTTAACCTCAGGTACAGATTCACCAACCTGCGGGTCACGGTCATTTCAGGACTGACGGGTGAGGACAGAAGTGATTTCTCGTACCAGGTGATCAAGGACGTTCAGGTGGTGCCGCGTTTCATTGGGGAATGGGGTGACGTTGTGATCACTCTCAAGGACGGCACCAAAGTGGATCTTAGGAGCGTCCCCAAGTTCAGAGAGATCGCCAAATACTGTCTCTCAATGGCTGATAAACCGGCTGTTCCAAAAGAGAGTGGCCCTAAAGGATTTTAG

Coding sequence (CDS)

ATGGCCGCCTCTACTTCCATCTTCTCACCCACCGCCGCCACCGCTGCCGCCGTCATCTCCTCCTCCTCCTCCTCCTCCTCTACCCACCGACCACTGTTATACAATTTCCCCTCAAAGATCACGACACAATTCAACAGACCCACCACCCGCATCCTCGTCTCCTCCTCCTCCTCCTCCTCCTCCACCAGCACTTCTCGCGCCGCCGCTGCCGCTTCGAAAAACGCCGCCGAGGAAATCGTGTTCTTCGACGGGGGCGCTCACTATGGCGACCTTGTAGCTAACCTTCTTCTGGGTTTTACTCTTCTATGGCTGCCCTTAACTGTGGCCGCAGTTTCCAGGGCGTTTAACCTCAGGTACAGATTCACCAACCTGCGGGTCACGGTCATTTCAGGACTGACGGGTGAGGACAGAAGTGATTTCTCGTACCAGGTGATCAAGGACGTTCAGGTGGTGCCGCGTTTCATTGGGGAATGGGGTGACGTTGTGATCACTCTCAAGGACGGCACCAAAGTGGATCTTAGGAGCGTCCCCAAGTTCAGAGAGATCGCCAAATACTGTCTCTCAATGGCTGATAAACCGGCTGTTCCAAAAGAGAGTGGCCCTAAAGGATTTTAG

Protein sequence

MAASTSIFSPTAATAAAVISSSSSSSSTHRPLLYNFPSKITTQFNRPTTRILVSSSSSSSSTSTSRAAAAASKNAAEEIVFFDGGAHYGDLVANLLLGFTLLWLPLTVAAVSRAFNLRYRFTNLRVTVISGLTGEDRSDFSYQVIKDVQVVPRFIGEWGDVVITLKDGTKVDLRSVPKFREIAKYCLSMADKPAVPKESGPKGF
Homology
[Close]
BLAST of Cp4.1LG01g12600 vs. TrEMBL
Match: A0A0A0KTZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604910 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 2.0e-84
Identity = 176/202 (87.13%), Postives = 185/202 (91.58%), Query Frame = 1 

Query: 3   ASTSIFSPTAATAAAVISSSSSSSSTHRPLLYNFPSKITTQFNRPTTRILVSSSSSSSST 62
           +STSIFSPTA   AA  ++++SSSSTHRP LYNFPSKIT QFNRPTTRI VSSS     T
Sbjct: 4   SSTSIFSPTATATAA--TATTSSSSTHRPFLYNFPSKITPQFNRPTTRIFVSSS-----T 63

Query: 63  STSRAAAAASKNAAEEIVFFDGGAHYGDLVANLLLGFTLLWLPLTVAAVSRAFNLRYRFT 122
           +TSRAAA  SKNAAEEIVFFDGGAHYGDLVANLLLGFTLLWLPLT+AAVSRAF LRYRFT
Sbjct: 64  NTSRAAAN-SKNAAEEIVFFDGGAHYGDLVANLLLGFTLLWLPLTLAAVSRAFYLRYRFT 123

Query: 123 NLRVTVISGLTGEDRSDFSYQVIKDVQVVPRFIGEWGDVVITLKDGTKVDLRSVPKFREI 182
           NLRVTVISGLTGEDRSDFSY VIKDVQVVPRFIGEWGDVVITL+DGTKVDLRSVPKFREI
Sbjct: 124 NLRVTVISGLTGEDRSDFSYNVIKDVQVVPRFIGEWGDVVITLQDGTKVDLRSVPKFREI 183

Query: 183 AKYCLSMADKPAVPKESGPKGF 205
           AKYCLSMADKPAVPKE+GPKGF
Sbjct: 184 AKYCLSMADKPAVPKETGPKGF 197

[Close]
BLAST of Cp4.1LG01g12600 vs. TrEMBL
Match: A0A059BG41_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02521 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.1e-63
Identity = 140/207 (67.63%), Postives = 163/207 (78.74%), Query Frame = 1 

Query: 1   MAASTSIFSPTAATAAAVISSSSSSSSTHRPLLYNFPSKIT---TQFNRPTTRILVSSSS 60
           ++ ST+  +  AA AAA  S++     + +P  Y+ P  +T   T  NRP T++ VSSSS
Sbjct: 6   LSPSTAAAAAAAAAAAAATSAAGRHLPSAKPPPYSLPVTVTRPRTSSNRPVTKLHVSSSS 65

Query: 61  SSSSTSTSRAAAAASKNAAEEIVFFDGGAHYGDLVANLLLGFTLLWLPLTVAAVSRAFNL 120
           S   T+ + AA AA+    EE VFFDGGAHYGDL  NLLLGFTLLWLPLT+AAVSRAF L
Sbjct: 66  SE--TAAAAAATAAAAQPKEETVFFDGGAHYGDLAVNLLLGFTLLWLPLTLAAVSRAFYL 125

Query: 121 RYRFTNLRVTVISGLTGEDRSDFSYQVIKDVQVVPRFIGEWGDVVITLKDGTKVDLRSVP 180
           RYRFTNLRVTV+SGLTG+DRSDFSY+VI+DVQVVPRFIGEWGD+VITLKDGTKVDLRSVP
Sbjct: 126 RYRFTNLRVTVVSGLTGQDRSDFSYKVIEDVQVVPRFIGEWGDIVITLKDGTKVDLRSVP 185

Query: 181 KFREIAKYCLSMADKPAVPKESGPKGF 205
           KFREIAKYCL+MA+K  V KE GPKGF
Sbjct: 186 KFREIAKYCLAMAEKAVVLKEEGPKGF 210

[Close]
BLAST of Cp4.1LG01g12600 vs. TrEMBL
Match: A0A061EI85_THECC (NAD(P)-linked oxidoreductase superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_011779 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 3.3e-63
Identity = 144/207 (69.57%), Postives = 168/207 (81.16%), Query Frame = 1 

Query: 3   ASTSIFSPTAATAAAVISSSSSSSSTHRPLLYNFPS---KITTQFNRP--TTRILVSSSS 62
           A+TS+  P AA AAA  ++S +  S H    + FP+   K T++ N P  +T++ VSS +
Sbjct: 2   ATTSLLLP-AAIAAAAAAASDTHQSLHLSSKFPFPNLLFKPTSKTNGPILSTKLHVSSPT 61

Query: 63  SSSSTSTSRAAAAASKNAAEEIVFFDGGAHYGDLVANLLLGFTLLWLPLTVAAVSRAFNL 122
           +  +T TS  + + SKN  EE +FFDGGAHYGDL+ANLLLGFTLLWLPLT+AAVSRAF L
Sbjct: 62  NQPAT-TSTPSKSFSKNPKEETIFFDGGAHYGDLIANLLLGFTLLWLPLTLAAVSRAFFL 121

Query: 123 RYRFTNLRVTVISGLTGEDRSDFSYQVIKDVQVVPRFIGEWGDVVITLKDGTKVDLRSVP 182
           RYRFTNLRVTVISGLTG+DRSDFSY+VIKDVQVVPRFIGEWGDVVITLKDGTKVDLRSVP
Sbjct: 122 RYRFTNLRVTVISGLTGQDRSDFSYKVIKDVQVVPRFIGEWGDVVITLKDGTKVDLRSVP 181

Query: 183 KFREIAKYCLSMADKPAVPKESGPKGF 205
           +FREIAKYCLSMADKP V KE+G KGF
Sbjct: 182 RFREIAKYCLSMADKPVVLKETGRKGF 206

[Close]
BLAST of Cp4.1LG01g12600 vs. TrEMBL
Match: A0A067L9I8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15572 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 7.3e-63
Identity = 140/205 (68.29%), Postives = 164/205 (80.00%), Query Frame = 1 

Query: 4   STSIFSPTAATAAAVISSSSSSSSTHRPLLYN----FPSKITTQFNRPTTRILVSSSSSS 63
           ++ + SPTAAT A     + + S TH+ L  +    FP+   ++ +RP T++ VSS ++ 
Sbjct: 2   ASRLLSPTAATTA-----TGTPSITHQSLFISSKVPFPT-FRSKVHRPITKLHVSSPANK 61

Query: 64  SSTSTSRAAAAASKNAAEEIVFFDGGAHYGDLVANLLLGFTLLWLPLTVAAVSRAFNLRY 123
             T T+      SK  +EE +FFDGGAHYGDL+ANLLLGFTLLWLPLT+AAVSRAF LRY
Sbjct: 62  PITGTT----TPSKKPSEETIFFDGGAHYGDLLANLLLGFTLLWLPLTLAAVSRAFYLRY 121

Query: 124 RFTNLRVTVISGLTGEDRSDFSYQVIKDVQVVPRFIGEWGDVVITLKDGTKVDLRSVPKF 183
           RFTNLRVTVISGLTG+DRSDFSY+VIKDVQVVPRFIGEWGDVVITLKDGTKVDLRSVPKF
Sbjct: 122 RFTNLRVTVISGLTGQDRSDFSYKVIKDVQVVPRFIGEWGDVVITLKDGTKVDLRSVPKF 181

Query: 184 REIAKYCLSMADKPAVPKESGPKGF 205
           REIAKYCL+MA+KP V KESGPKGF
Sbjct: 182 REIAKYCLAMAEKPVVLKESGPKGF 196

[Close]
BLAST of Cp4.1LG01g12600 vs. TrEMBL
Match: W9R9Q1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021121 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.2e-62
Identity = 138/202 (68.32%), Postives = 159/202 (78.71%), Query Frame = 1 

Query: 3   ASTSIFSPTAATAAAVISSSSSSSSTHRPLLYNFPSKITTQFNRPTTRILVSSSSSSSST 62
           AST +FS  A T+AA+ + S   SS       N P++ ++   RP T++ VSS ++    
Sbjct: 2   ASTPLFSSPATTSAAISNQSFPLSSNRLFPFPNIPTRSSSIPKRPLTKLHVSSPTNK--- 61

Query: 63  STSRAAAAASKNAAEEIVFFDGGAHYGDLVANLLLGFTLLWLPLTVAAVSRAFNLRYRFT 122
            TS + A  S+   EE +FFDGGAHYGDL ANLLLGFTLLWLPLT+AAV RAF LRYRFT
Sbjct: 62  PTSFSTAGTSEKPTEETIFFDGGAHYGDLTANLLLGFTLLWLPLTLAAVLRAFFLRYRFT 121

Query: 123 NLRVTVISGLTGEDRSDFSYQVIKDVQVVPRFIGEWGDVVITLKDGTKVDLRSVPKFREI 182
           NLRVTVISGLTG+DRSDFSY+VIKDVQVVPRFIGEWGD++ITLKD TKVDLRSVPKFREI
Sbjct: 122 NLRVTVISGLTGQDRSDFSYKVIKDVQVVPRFIGEWGDIIITLKDDTKVDLRSVPKFREI 181

Query: 183 AKYCLSMADKPAVPKESGPKGF 205
           AKYCLSMA+KP V KESGPKGF
Sbjct: 182 AKYCLSMAEKPMVLKESGPKGF 200

[Close]
BLAST of Cp4.1LG01g12600 vs. TAIR10
Match: AT1G14345.1 (AT1G14345.1 NAD(P)-linked oxidoreductase superfamily protein)

HSP 1 Score: 241.5 bits (615), Expect = 4.5e-64
Identity = 143/208 (68.75%), Postives = 165/208 (79.33%), Query Frame = 1 

Query: 1   MAASTSIFSPTAATAAAVISSSSSSSSTHRPLLYNFP----SKITTQFNRPTTRILVSSS 60
           MAAS+SI   TA T+  V+  S   S+T     ++FP    S  T    R   R+L++SS
Sbjct: 1   MAASSSIPPSTAVTS--VVRKSLLLSTT-----FSFPASSLSPSTKLPQRHIQRLLLASS 60

Query: 61  SSSSSTSTSRAAAAASKNAAEEIVFFDGGAHYGDLVANLLLGFTLLWLPLTVAAVSRAFN 120
           S+S+ST  S      SK A +E V+FDGGAHYGDL+ANL+LG T+LWLPLT+AAVSRAFN
Sbjct: 61  SASASTVPSD-----SKPAKKETVYFDGGAHYGDLLANLILGLTILWLPLTLAAVSRAFN 120

Query: 121 LRYRFTNLRVTVISGLTGEDRSDFSYQVIKDVQVVPRFIGEWGDVVITLKDGTKVDLRSV 180
           LRYRFTNLRVTVISGLTG+DRSDFSY+VIKDVQVVPRFIGEWGD++ITLKDGTKVDLRSV
Sbjct: 121 LRYRFTNLRVTVISGLTGDDRSDFSYKVIKDVQVVPRFIGEWGDIIITLKDGTKVDLRSV 180

Query: 181 PKFREIAKYCLSMADKPAVPKESGPKGF 205
           PKFREIAKYCLSMAD+PAV KESG KGF
Sbjct: 181 PKFREIAKYCLSMADQPAVLKESGAKGF 196

[Close]
BLAST of Cp4.1LG01g12600 vs. NCBI nr
Match: gi|659091025|ref|XP_008446328.1| (PREDICTED: uncharacterized protein LOC103489098 [Cucumis melo])

HSP 1 Score: 324.7 bits (831), Expect = 1.1e-85
Identity = 179/202 (88.61%), Postives = 189/202 (93.56%), Query Frame = 1 

Query: 3   ASTSIFSPTAATAAAVISSSSSSSSTHRPLLYNFPSKITTQFNRPTTRILVSSSSSSSST 62
           +STSIFSPTAATAA   +++SSSSS HRPLLYNFPSKIT QF+RPTTRILVSSS     T
Sbjct: 4   SSTSIFSPTAATAA---TATSSSSSNHRPLLYNFPSKITPQFHRPTTRILVSSS-----T 63

Query: 63  STSRAAAAASKNAAEEIVFFDGGAHYGDLVANLLLGFTLLWLPLTVAAVSRAFNLRYRFT 122
           +TSRAAA  SKNAAEEIVFFDGGAHYGDLVANLLLGFTLLWLPLT+AAVSRAF LRYRFT
Sbjct: 64  NTSRAAAN-SKNAAEEIVFFDGGAHYGDLVANLLLGFTLLWLPLTLAAVSRAFYLRYRFT 123

Query: 123 NLRVTVISGLTGEDRSDFSYQVIKDVQVVPRFIGEWGDVVITLKDGTKVDLRSVPKFREI 182
           NLRVTVISGLTGEDRSDFSY+VIKDVQVVPRFIGEWGDVVITL+DGTKVDLRSVPKFREI
Sbjct: 124 NLRVTVISGLTGEDRSDFSYEVIKDVQVVPRFIGEWGDVVITLQDGTKVDLRSVPKFREI 183

Query: 183 AKYCLSMADKPAVPKESGPKGF 205
           AKYCLSMADKPAVPKE+GPKGF
Sbjct: 184 AKYCLSMADKPAVPKETGPKGF 196

[Close]
BLAST of Cp4.1LG01g12600 vs. NCBI nr
Match: gi|449434808|ref|XP_004135188.1| (PREDICTED: uncharacterized protein LOC101221820 [Cucumis sativus])

HSP 1 Score: 320.1 bits (819), Expect = 2.8e-84
Identity = 176/202 (87.13%), Postives = 185/202 (91.58%), Query Frame = 1 

Query: 3   ASTSIFSPTAATAAAVISSSSSSSSTHRPLLYNFPSKITTQFNRPTTRILVSSSSSSSST 62
           +STSIFSPTA   AA  ++++SSSSTHRP LYNFPSKIT QFNRPTTRI VSSS     T
Sbjct: 4   SSTSIFSPTATATAA--TATTSSSSTHRPFLYNFPSKITPQFNRPTTRIFVSSS-----T 63

Query: 63  STSRAAAAASKNAAEEIVFFDGGAHYGDLVANLLLGFTLLWLPLTVAAVSRAFNLRYRFT 122
           +TSRAAA  SKNAAEEIVFFDGGAHYGDLVANLLLGFTLLWLPLT+AAVSRAF LRYRFT
Sbjct: 64  NTSRAAAN-SKNAAEEIVFFDGGAHYGDLVANLLLGFTLLWLPLTLAAVSRAFYLRYRFT 123

Query: 123 NLRVTVISGLTGEDRSDFSYQVIKDVQVVPRFIGEWGDVVITLKDGTKVDLRSVPKFREI 182
           NLRVTVISGLTGEDRSDFSY VIKDVQVVPRFIGEWGDVVITL+DGTKVDLRSVPKFREI
Sbjct: 124 NLRVTVISGLTGEDRSDFSYNVIKDVQVVPRFIGEWGDVVITLQDGTKVDLRSVPKFREI 183

Query: 183 AKYCLSMADKPAVPKESGPKGF 205
           AKYCLSMADKPAVPKE+GPKGF
Sbjct: 184 AKYCLSMADKPAVPKETGPKGF 197

[Close]
BLAST of Cp4.1LG01g12600 vs. NCBI nr
Match: gi|1012169923|ref|XP_015965464.1| (PREDICTED: uncharacterized protein LOC107489210 [Arachis duranensis])

HSP 1 Score: 254.6 bits (649), Expect = 1.5e-64
Identity = 138/202 (68.32%), Postives = 159/202 (78.71%), Query Frame = 1 

Query: 3   ASTSIFSPTAATAAAVISSSSSSSSTHRPLLYNFPSKITTQFNRPTTRILVSSSSSSSST 62
           A+T +F P     +A IS        HR  +  FP K  T   RP T++ VSSS ++   
Sbjct: 2   ATTPLFLPPPIITSAAIS--------HRTSVSLFP-KFLTPHRRPITKLRVSSSPTNKPP 61

Query: 63  STSRAAAAASKNAAEEIVFFDGGAHYGDLVANLLLGFTLLWLPLTVAAVSRAFNLRYRFT 122
           ST+   A++    A EI+FFDGGAHYGDL+ANLLLGFTLLWLPLT+AAVSRAFNLRYRFT
Sbjct: 62  STTTTPASSPSKPAGEIIFFDGGAHYGDLLANLLLGFTLLWLPLTLAAVSRAFNLRYRFT 121

Query: 123 NLRVTVISGLTGEDRSDFSYQVIKDVQVVPRFIGEWGDVVITLKDGTKVDLRSVPKFREI 182
           NLRVTVISGLTG+DRSDFSY V+KDVQVVPRFIGEWGD+VITLKDGTKVDLRS+PKFREI
Sbjct: 122 NLRVTVISGLTGQDRSDFSYSVVKDVQVVPRFIGEWGDIVITLKDGTKVDLRSIPKFREI 181

Query: 183 AKYCLSMADKPAVPKESGPKGF 205
           A+YCL+MA+KP V KESGPKGF
Sbjct: 182 ARYCLAMAEKPTVLKESGPKGF 194

[Close]
BLAST of Cp4.1LG01g12600 vs. NCBI nr
Match: gi|1021518431|ref|XP_016202716.1| (PREDICTED: uncharacterized protein LOC107643550 [Arachis ipaensis])

HSP 1 Score: 254.6 bits (649), Expect = 1.5e-64
Identity = 139/202 (68.81%), Postives = 159/202 (78.71%), Query Frame = 1 

Query: 3   ASTSIFSPTAATAAAVISSSSSSSSTHRPLLYNFPSKITTQFNRPTTRILVSSSSSSSST 62
           A+T +F P     +A I        THR  +  FP K  T   RP T++ VSSS ++   
Sbjct: 2   ATTPLFLPPPIITSAAI--------THRTSVSLFP-KFLTLHRRPITKLHVSSSPTNKPP 61

Query: 63  STSRAAAAASKNAAEEIVFFDGGAHYGDLVANLLLGFTLLWLPLTVAAVSRAFNLRYRFT 122
           ST+ A A++      EI+FFDGGAHYGDL+ANLLLGFTLLWLPLT+AAVSRAFNLRYRFT
Sbjct: 62  STTTAPASSLSKPVGEIIFFDGGAHYGDLLANLLLGFTLLWLPLTLAAVSRAFNLRYRFT 121

Query: 123 NLRVTVISGLTGEDRSDFSYQVIKDVQVVPRFIGEWGDVVITLKDGTKVDLRSVPKFREI 182
           NLRVTVISGLTG+DRSDFSY V+KDVQVVPRFIGEWGD+VITLKDGTKVDLRSVPKFREI
Sbjct: 122 NLRVTVISGLTGQDRSDFSYSVVKDVQVVPRFIGEWGDIVITLKDGTKVDLRSVPKFREI 181

Query: 183 AKYCLSMADKPAVPKESGPKGF 205
           A+YCL+MA+KP V KESGPKGF
Sbjct: 182 ARYCLAMAEKPTVLKESGPKGF 194

[Close]
BLAST of Cp4.1LG01g12600 vs. NCBI nr
Match: gi|702430788|ref|XP_010068789.1| (PREDICTED: uncharacterized protein LOC104455751, partial [Eucalyptus grandis])

HSP 1 Score: 251.5 bits (641), Expect = 1.2e-63
Identity = 138/196 (70.41%), Postives = 157/196 (80.10%), Query Frame = 1 

Query: 12  AATAAAVISSSSSSSSTHRPLLYNFPSKIT---TQFNRPTTRILVSSSSSSSSTSTSRAA 71
           AA AAA  S++     + +P  Y+ P  +T   T  NRP T++ VSSSSS   T+ + AA
Sbjct: 1   AAAAAAATSAAGRHLPSAKPPPYSLPVTVTRPRTSSNRPVTKLHVSSSSSE--TAAAAAA 60

Query: 72  AAASKNAAEEIVFFDGGAHYGDLVANLLLGFTLLWLPLTVAAVSRAFNLRYRFTNLRVTV 131
            AA+    EE VFFDGGAHYGDL  NLLLGFTLLWLPLT+AAVSRAF LRYRFTNLRVTV
Sbjct: 61  TAAAAQPKEETVFFDGGAHYGDLAVNLLLGFTLLWLPLTLAAVSRAFYLRYRFTNLRVTV 120

Query: 132 ISGLTGEDRSDFSYQVIKDVQVVPRFIGEWGDVVITLKDGTKVDLRSVPKFREIAKYCLS 191
           +SGLTG+DRSDFSY+VI+DVQVVPRFIGEWGD+VITLKDGTKVDLRSVPKFREIAKYCL+
Sbjct: 121 VSGLTGQDRSDFSYKVIEDVQVVPRFIGEWGDIVITLKDGTKVDLRSVPKFREIAKYCLA 180

Query: 192 MADKPAVPKESGPKGF 205
           MA+K  V KE GPKGF
Sbjct: 181 MAEKAVVLKEEGPKGF 194

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g12600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g12600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTZ0_CUCSA2.0e-8487.13Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604910 PE=4 SV=1[more]
A0A059BG41_EUCGR1.1e-6367.63Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02521 PE=4 SV=1[more]
A0A061EI85_THECC3.3e-6369.57NAD(P)-linked oxidoreductase superfamily protein isoform 1 OS=Theobroma cacao GN... [more]
A0A067L9I8_JATCU7.3e-6368.29Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15572 PE=4 SV=1[more]
W9R9Q1_9ROSA1.2e-6268.32Uncharacterized protein OS=Morus notabilis GN=L484_021121 PE=4 SV=1[more]
BLAST of Cp4.1LG01g12600 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G14345.14.5e-6468.75 NAD(P)-linked oxidoreductase superfamily protein[more]
BLAST of Cp4.1LG01g12600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659091025|ref|XP_008446328.1|1.1e-8588.61PREDICTED: uncharacterized protein LOC103489098 [Cucumis melo][more]
gi|449434808|ref|XP_004135188.1|2.8e-8487.13PREDICTED: uncharacterized protein LOC101221820 [Cucumis sativus][more]
gi|1012169923|ref|XP_015965464.1|1.5e-6468.32PREDICTED: uncharacterized protein LOC107489210 [Arachis duranensis][more]
gi|1021518431|ref|XP_016202716.1|1.5e-6468.81PREDICTED: uncharacterized protein LOC107643550 [Arachis ipaensis][more]
gi|702430788|ref|XP_010068789.1|1.2e-6370.41PREDICTED: uncharacterized protein LOC104455751, partial [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005182DUF304
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006301 postreplication repair
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0010207 photosystem II assembly
biological_process GO:0008150 biological_process
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g12600.1Cp4.1LG01g12600.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005182Domain of unknown function DUF304PFAMPF03703bPH_2coord: 115..186
score: 1.5
NoneNo IPR availablePANTHERPTHR35688FAMILY NOT NAMEDcoord: 3..204
score: 2.1E
NoneNo IPR availablePANTHERPTHR35688:SF2NAD(P)-LINKED OXIDOREDUCTASE-LIKE PROTEINcoord: 3..204
score: 2.1E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g12600Cucsa.285260Cucumber (Gy14) v1cgycpeB0754
Cp4.1LG01g12600CmaCh04G016420Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g12600CmoCh04G017210Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g12600Cla010168Watermelon (97103) v1cpewmB432
Cp4.1LG01g12600Csa5G604910Cucumber (Chinese Long) v2cpecuB416
Cp4.1LG01g12600MELO3C012078Melon (DHL92) v3.5.1cpemeB377
Cp4.1LG01g12600ClCG05G024460Watermelon (Charleston Gray)cpewcgB393
Cp4.1LG01g12600CSPI05G23540Wild cucumber (PI 183967)cpecpiB415
Cp4.1LG01g12600Lsi04G004430Bottle gourd (USVL1VR-Ls)cpelsiB360
Cp4.1LG01g12600MELO3C012078.2Melon (DHL92) v3.6.1cpemedB437
Cp4.1LG01g12600CsaV3_5G032500Cucumber (Chinese Long) v3cpecucB0518
Cp4.1LG01g12600Bhi07G001296Wax gourdcpewgoB0568
Cp4.1LG01g12600CsGy5G023080Cucumber (Gy14) v2cgybcpeB626
Cp4.1LG01g12600Carg01716Silver-seed gourdcarcpeB1177
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g12600Cucumber (Chinese Long) v3cpecucB0470
Cp4.1LG01g12600Cucumber (Chinese Long) v3cpecucB0537
Cp4.1LG01g12600Wax gourdcpewgoB0507
Cp4.1LG01g12600Wax gourdcpewgoB0551
Cp4.1LG01g12600Wax gourdcpewgoB0581
Cp4.1LG01g12600Cucurbita pepo (Zucchini)cpecpeB034
Cp4.1LG01g12600Cucurbita pepo (Zucchini)cpecpeB203
Cp4.1LG01g12600Cucurbita pepo (Zucchini)cpecpeB346
Cp4.1LG01g12600Cucurbita maxima (Rimu)cmacpeB432
Cp4.1LG01g12600Cucurbita moschata (Rifu)cmocpeB395
Cp4.1LG01g12600Watermelon (97103) v1cpewmB444
Cp4.1LG01g12600Cucumber (Gy14) v2cgybcpeB061
Cp4.1LG01g12600Cucumber (Gy14) v2cgybcpeB645
Cp4.1LG01g12600Melon (DHL92) v3.6.1cpemedB421
Cp4.1LG01g12600Melon (DHL92) v3.6.1cpemedB459
Cp4.1LG01g12600Silver-seed gourdcarcpeB0148
Cp4.1LG01g12600Silver-seed gourdcarcpeB0981