Cp4.1LG01g12560 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG01g12560
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRING/U-box superfamily protein, putative isoform 2
LocationCp4.1LG01 : 8816694 .. 8817619 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTACCTCCGAAAATCCTGATTGTGGGAGCTCTACTTTCTCATATTGAGAGAGTAGCAAAACAGAACCCACAGCCAAGTTATGCTCATCCTCTAATTGGAACTGCACGAGTTGTTGTTCTTTCATGCCCAAACCCATTCATCCTGAACATTCCTATGCAAACTTCCTCTGGAGAGAAGCTTTTGAATCTACTAATTTGGTGCACACAGTTTGATTCTCCTACTCTCCAAAGAGACACCCAACAATGGTGCAGTGCAAGTAGCAGCATTGATTTTGCTGATGTGTCTGAGCCACTCAAATCAGTATCATGCATCGTGCAACAGCTCAAACCCACCTGTAGCAGATATTATCTTCTTTGGATTTTTCCCTTCGAACTTTTCTTCAAAAGGAGAGGGTTTTATACTCTTATAAAGAATGTTTATGTGGAATCTTCTCGCAGATGAATTCAAATATGGGTTATGTGAAAGATATCTTTCACAGAGATCACTATGGAATCGACTCAGAATTGTGAGAAGTACTGATGTACGCGTCATTGTTTTTCATGCTGAATGCTTGAATCAGACTACTCAAAAGACACGTACGAGTGACCTATCGTTCCCGATTTGTCCAAAACGTGAGGATAACCATTCTCCTTAGCAACGAGCAAATTTGAGATGGAGGCATGTGAATTCCCTCCCAAGGCCTAGACCCTGGACCAGCAAGGACGGACCACCAAGGCCATGGGGTTGTGCTTGAAGGGGCCTTACATGCACCTCCACAAAATATAATCCTTTATGTAACCCAAAATTGTGTGAACCTTTGTTTCAAGGGAAATTCCAGCAAAGAATTCCCATCAAAGTTAACAAAAAGTGGCTCAAATTCTTCAAAATTGTTGAGTGCAAGGCGACTTGACAAAGAATTTGTGGCTGTTCATGAACTTCAGCCGGAC

mRNA sequence

GTACCTCCGAAAATCCTGATTGTGGGAGCTCTACTTTCTCATATTGAGAGAGTAGCAAAACAGAACCCACAGCCAAGTTATGCTCATCCTCTAATTGGAACTGCACGAGTTGTTGTTCTTTCATGCCCAAACCCATTCATCCTGAACATTCCTATGCAAACTTCCTCTGGAGAGAAGCTTTTGAATCTACTAATTTGGTGCACACAAATTGTGAGAAGTACTGATGTACGCGTCATTGTTTTTCATGCTGAATGCTTGAATCAGACTACTCAAAAGACACGTACGAGTGACCTATCGTTCCCGATTTGTCCAAAACGCCTAGACCCTGGACCAGCAAGGACGGACCACCAAGGCCATGGGGTTGTGCTTGAAGGGGCCTTACATGCACCTCCACAAAATATAATCCTTTATGTAACCCAAAATTGTGTGAACCTTTGTTTCAAGGGAAATTCCAGCAAAGAATTCCCATCAAAGTTAACAAAAAGTGGCTCAAATTCTTCAAAATTGTTGAGTGCAAGGCGACTTGACAAAGAATTTGTGGCTGTTCATGAACTTCAGCCGGAC

Coding sequence (CDS)

GTACCTCCGAAAATCCTGATTGTGGGAGCTCTACTTTCTCATATTGAGAGAGTAGCAAAACAGAACCCACAGCCAAGTTATGCTCATCCTCTAATTGGAACTGCACGAGTTGTTGTTCTTTCATGCCCAAACCCATTCATCCTGAACATTCCTATGCAAACTTCCTCTGGAGAGAAGCTTTTGAATCTACTAATTTGGTGCACACAAATTGTGAGAAGTACTGATGTACGCGTCATTGTTTTTCATGCTGAATGCTTGAATCAGACTACTCAAAAGACACGTACGAGTGACCTATCGTTCCCGATTTGTCCAAAACGCCTAGACCCTGGACCAGCAAGGACGGACCACCAAGGCCATGGGGTTGTGCTTGAAGGGGCCTTACATGCACCTCCACAAAATATAATCCTTTATGTAACCCAAAATTGTGTGAACCTTTGTTTCAAGGGAAATTCCAGCAAAGAATTCCCATCAAAGTTAACAAAAAGTGGCTCAAATTCTTCAAAATTGTTGAGTGCAAGGCGACTTGACAAAGAATTTGTGGCTGTTCATGAACTTCAGCCGGAC

Protein sequence

VPPKILIVGALLSHIERVAKQNPQPSYAHPLIGTARVVVLSCPNPFILNIPMQTSSGEKLLNLLIWCTQIVRSTDVRVIVFHAECLNQTTQKTRTSDLSFPICPKRLDPGPARTDHQGHGVVLEGALHAPPQNIILYVTQNCVNLCFKGNSSKEFPSKLTKSGSNSSKLLSARRLDKEFVAVHELQPD
BLAST of Cp4.1LG01g12560 vs. TrEMBL
Match: A0A0A0KSR5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606260 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.8e-19
Identity = 68/148 (45.95%), Postives = 82/148 (55.41%), Query Frame = 1

Query: 69  QIVRSTDVRVI-------VFHAECLNQTTQKTRTSDLSFPIC------------------ 128
           +IVRSTD+ V        VFHAECL+QTT KT  SD   P+C                  
Sbjct: 276 RIVRSTDMPVAGVLSCRHVFHAECLDQTTPKTCKSDPPCPLCLKHENDRSPEQRTNSRLR 335

Query: 129 ---------PKRLDPGPARTDHQGH-GVVLEGALHAPPQNIILYVTQN-CVNLCFKGNSS 181
                    P   + GP+R       G  +EGALHAPP+N +L+V +N   NL FKGNSS
Sbjct: 336 NANSLPRPRPSTSEDGPSRPWGCAQVGDCVEGALHAPPRNSMLFVNRNRSKNLSFKGNSS 395

BLAST of Cp4.1LG01g12560 vs. TrEMBL
Match: A0A061EA54_THECC (RING/U-box superfamily protein, putative isoform 1 OS=Theobroma cacao GN=TCM_011682 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.5e-14
Identity = 60/143 (41.96%), Postives = 79/143 (55.24%), Query Frame = 1

Query: 69  QIVRSTDVRVI-------VFHAECLNQTTQKTRTSDLSFPICPK---------------- 128
           +IVRS+D+ V        VFHAECL QTT KTR +D   PIC +                
Sbjct: 253 RIVRSSDMPVAGVLSCRHVFHAECLEQTTPKTRKNDPPCPICVRLEEQNSPEKQVISRLR 312

Query: 129 ----RLDP----GPARTDHQGH-GVVLEGALHAPPQNIILYVTQNCV--NLCFKGNSSKE 178
               RL P    GP+RT      G  +EGALHAPP++ +L + ++ +  NL  KGNSSKE
Sbjct: 313 NGLPRLRPFSEDGPSRTWGCAQVGDCVEGALHAPPRSTMLLLNRSRMKKNLFVKGNSSKE 372

BLAST of Cp4.1LG01g12560 vs. TrEMBL
Match: A0A061EAB9_THECC (RING/U-box superfamily protein, putative isoform 2 OS=Theobroma cacao GN=TCM_011682 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.5e-14
Identity = 60/143 (41.96%), Postives = 79/143 (55.24%), Query Frame = 1

Query: 69  QIVRSTDVRVI-------VFHAECLNQTTQKTRTSDLSFPICPK---------------- 128
           +IVRS+D+ V        VFHAECL QTT KTR +D   PIC +                
Sbjct: 224 RIVRSSDMPVAGVLSCRHVFHAECLEQTTPKTRKNDPPCPICVRLEEQNSPEKQVISRLR 283

Query: 129 ----RLDP----GPARTDHQGH-GVVLEGALHAPPQNIILYVTQNCV--NLCFKGNSSKE 178
               RL P    GP+RT      G  +EGALHAPP++ +L + ++ +  NL  KGNSSKE
Sbjct: 284 NGLPRLRPFSEDGPSRTWGCAQVGDCVEGALHAPPRSTMLLLNRSRMKKNLFVKGNSSKE 343

BLAST of Cp4.1LG01g12560 vs. TrEMBL
Match: A0A061EBW4_THECC (Mandelonitrile lyase, related, putative isoform 3 OS=Theobroma cacao GN=TCM_011682 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.5e-14
Identity = 60/143 (41.96%), Postives = 79/143 (55.24%), Query Frame = 1

Query: 69  QIVRSTDVRVI-------VFHAECLNQTTQKTRTSDLSFPICPK---------------- 128
           +IVRS+D+ V        VFHAECL QTT KTR +D   PIC +                
Sbjct: 141 RIVRSSDMPVAGVLSCRHVFHAECLEQTTPKTRKNDPPCPICVRLEEQNSPEKQVISRLR 200

Query: 129 ----RLDP----GPARTDHQGH-GVVLEGALHAPPQNIILYVTQNCV--NLCFKGNSSKE 178
               RL P    GP+RT      G  +EGALHAPP++ +L + ++ +  NL  KGNSSKE
Sbjct: 201 NGLPRLRPFSEDGPSRTWGCAQVGDCVEGALHAPPRSTMLLLNRSRMKKNLFVKGNSSKE 260

BLAST of Cp4.1LG01g12560 vs. TrEMBL
Match: W9S0B6_9ROSA (Methyltransferase-like protein 7B OS=Morus notabilis GN=L484_015674 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.9e-12
Identity = 58/143 (40.56%), Postives = 75/143 (52.45%), Query Frame = 1

Query: 69  QIVRSTDVRVI-------VFHAECLNQTTQKTRTSDLSFPICPK---------------- 128
           +IVRS D+ V        VFHAECL QTT K R +D   P+C +                
Sbjct: 515 RIVRSGDMPVTGVLSCCHVFHAECLEQTTPKMRRNDPPCPLCARLEEENCPEQRSCSRSR 574

Query: 129 ----RLDP----GPART-DHQGHGVVLEGALHAPPQNIILYVTQNCV--NLCFKGNSSKE 178
               RL P    GP+R       G  +EGALH PP+N +L + ++ +  NL  KGNSSKE
Sbjct: 575 NSFPRLKPFNEDGPSRPWGCVQVGDCVEGALHVPPRNSMLLLNRSRIKKNLSLKGNSSKE 634

BLAST of Cp4.1LG01g12560 vs. TAIR10
Match: AT1G14180.1 (AT1G14180.1 RING/U-box superfamily protein)

HSP 1 Score: 55.5 bits (132), Expect = 4.2e-08
Identity = 41/123 (33.33%), Postives = 62/123 (50.41%), Query Frame = 1

Query: 70  IVRSTDVRVI-------VFHAECLNQTTQKTRTSDLSFPICPK-------------RLDP 129
           IVR+ D+ V        VFH ECL+Q+T K + +D   PIC K             RL P
Sbjct: 203 IVRNRDMPVTGVLSCQHVFHVECLDQSTPKIQRNDPLCPICTKQEGEHFKSNNIVPRLKP 262

Query: 130 ----GPARTDH--QGHGVVLEGALHAPPQNIILYVTQNCV--NLCFKGNSSKEFPSKLTK 165
               GP+         G  +E A++ PP+N ++ + +N +  +L  +GNSSK+F  K+ +
Sbjct: 263 LYEDGPSSRPWGCAQAGDCVESAVNVPPKNTMMMINRNRIRKSLSLRGNSSKDFSRKMKR 322

BLAST of Cp4.1LG01g12560 vs. NCBI nr
Match: gi|659091111|ref|XP_008446375.1| (PREDICTED: uncharacterized protein LOC103489136 [Cucumis melo])

HSP 1 Score: 102.4 bits (254), Expect = 8.6e-19
Identity = 68/148 (45.95%), Postives = 82/148 (55.41%), Query Frame = 1

Query: 69  QIVRSTDVRVI-------VFHAECLNQTTQKTRTSDLSFPIC------------------ 128
           +IVRSTD+ V        VFHAECL+QTT KT  SD   P+C                  
Sbjct: 276 RIVRSTDMPVAGVLSCRHVFHAECLDQTTPKTCKSDPPCPLCLKHENDRSPEQRGNSRLR 335

Query: 129 ---------PKRLDPGPARTDHQGH-GVVLEGALHAPPQNIILYVTQN-CVNLCFKGNSS 181
                    P   + GP+R       G  +EGALHAPP+N +L+V +N   NL FKGNSS
Sbjct: 336 NANSLPRTRPSTSEDGPSRPWGCAQVGDCVEGALHAPPRNSMLFVNRNRAKNLSFKGNSS 395

BLAST of Cp4.1LG01g12560 vs. NCBI nr
Match: gi|449435334|ref|XP_004135450.1| (PREDICTED: uncharacterized protein LOC101203618 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 1.1e-18
Identity = 68/148 (45.95%), Postives = 82/148 (55.41%), Query Frame = 1

Query: 69  QIVRSTDVRVI-------VFHAECLNQTTQKTRTSDLSFPIC------------------ 128
           +IVRSTD+ V        VFHAECL+QTT KT  SD   P+C                  
Sbjct: 276 RIVRSTDMPVAGVLSCRHVFHAECLDQTTPKTCKSDPPCPLCLKHENDRSPEQRTNSRLR 335

Query: 129 ---------PKRLDPGPARTDHQGH-GVVLEGALHAPPQNIILYVTQN-CVNLCFKGNSS 181
                    P   + GP+R       G  +EGALHAPP+N +L+V +N   NL FKGNSS
Sbjct: 336 NANSLPRPRPSTSEDGPSRPWGCAQVGDCVEGALHAPPRNSMLFVNRNRSKNLSFKGNSS 395

BLAST of Cp4.1LG01g12560 vs. NCBI nr
Match: gi|590700032|ref|XP_007046059.1| (RING/U-box superfamily protein, putative isoform 2 [Theobroma cacao])

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 60/143 (41.96%), Postives = 79/143 (55.24%), Query Frame = 1

Query: 69  QIVRSTDVRVI-------VFHAECLNQTTQKTRTSDLSFPICPK---------------- 128
           +IVRS+D+ V        VFHAECL QTT KTR +D   PIC +                
Sbjct: 224 RIVRSSDMPVAGVLSCRHVFHAECLEQTTPKTRKNDPPCPICVRLEEQNSPEKQVISRLR 283

Query: 129 ----RLDP----GPARTDHQGH-GVVLEGALHAPPQNIILYVTQNCV--NLCFKGNSSKE 178
               RL P    GP+RT      G  +EGALHAPP++ +L + ++ +  NL  KGNSSKE
Sbjct: 284 NGLPRLRPFSEDGPSRTWGCAQVGDCVEGALHAPPRSTMLLLNRSRMKKNLFVKGNSSKE 343

BLAST of Cp4.1LG01g12560 vs. NCBI nr
Match: gi|590700036|ref|XP_007046060.1| (Mandelonitrile lyase, related, putative isoform 3 [Theobroma cacao])

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 60/143 (41.96%), Postives = 79/143 (55.24%), Query Frame = 1

Query: 69  QIVRSTDVRVI-------VFHAECLNQTTQKTRTSDLSFPICPK---------------- 128
           +IVRS+D+ V        VFHAECL QTT KTR +D   PIC +                
Sbjct: 141 RIVRSSDMPVAGVLSCRHVFHAECLEQTTPKTRKNDPPCPICVRLEEQNSPEKQVISRLR 200

Query: 129 ----RLDP----GPARTDHQGH-GVVLEGALHAPPQNIILYVTQNCV--NLCFKGNSSKE 178
               RL P    GP+RT      G  +EGALHAPP++ +L + ++ +  NL  KGNSSKE
Sbjct: 201 NGLPRLRPFSEDGPSRTWGCAQVGDCVEGALHAPPRSTMLLLNRSRMKKNLFVKGNSSKE 260

BLAST of Cp4.1LG01g12560 vs. NCBI nr
Match: gi|590700028|ref|XP_007046058.1| (RING/U-box superfamily protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 60/143 (41.96%), Postives = 79/143 (55.24%), Query Frame = 1

Query: 69  QIVRSTDVRVI-------VFHAECLNQTTQKTRTSDLSFPICPK---------------- 128
           +IVRS+D+ V        VFHAECL QTT KTR +D   PIC +                
Sbjct: 253 RIVRSSDMPVAGVLSCRHVFHAECLEQTTPKTRKNDPPCPICVRLEEQNSPEKQVISRLR 312

Query: 129 ----RLDP----GPARTDHQGH-GVVLEGALHAPPQNIILYVTQNCV--NLCFKGNSSKE 178
               RL P    GP+RT      G  +EGALHAPP++ +L + ++ +  NL  KGNSSKE
Sbjct: 313 NGLPRLRPFSEDGPSRTWGCAQVGDCVEGALHAPPRSTMLLLNRSRMKKNLFVKGNSSKE 372

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KSR5_CUCSA7.8e-1945.95Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606260 PE=4 SV=1[more]
A0A061EA54_THECC7.5e-1441.96RING/U-box superfamily protein, putative isoform 1 OS=Theobroma cacao GN=TCM_011... [more]
A0A061EAB9_THECC7.5e-1441.96RING/U-box superfamily protein, putative isoform 2 OS=Theobroma cacao GN=TCM_011... [more]
A0A061EBW4_THECC7.5e-1441.96Mandelonitrile lyase, related, putative isoform 3 OS=Theobroma cacao GN=TCM_0116... [more]
W9S0B6_9ROSA1.9e-1240.56Methyltransferase-like protein 7B OS=Morus notabilis GN=L484_015674 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G14180.14.2e-0833.33 RING/U-box superfamily protein[more]
Match NameE-valueIdentityDescription
gi|659091111|ref|XP_008446375.1|8.6e-1945.95PREDICTED: uncharacterized protein LOC103489136 [Cucumis melo][more]
gi|449435334|ref|XP_004135450.1|1.1e-1845.95PREDICTED: uncharacterized protein LOC101203618 [Cucumis sativus][more]
gi|590700032|ref|XP_007046059.1|1.1e-1341.96RING/U-box superfamily protein, putative isoform 2 [Theobroma cacao][more]
gi|590700036|ref|XP_007046060.1|1.1e-1341.96Mandelonitrile lyase, related, putative isoform 3 [Theobroma cacao][more]
gi|590700028|ref|XP_007046058.1|1.1e-1341.96RING/U-box superfamily protein, putative isoform 1 [Theobroma cacao][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
biological_process GO:0032259 methylation
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0008168 methyltransferase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g12560.1Cp4.1LG01g12560.1mRNA


The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g12560Cp4.1LG09g01970Cucurbita pepo (Zucchini)cpecpeB034