Cp4.1LG01g11910 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g11910
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionProtein of unknown function (DUF 3339)
LocationCp4.1LG01 : 5752913 .. 5753125 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGATTGGGGGCCGGTTTTTGTAGCTGTGATTCTGTTTGTTTTGCTAACTCCAGGTCTGCTGTTTCAGCTTCCTGGCAACCGCAGGTGCTTGGAGTTCGGCAACTTTCACACCAGTGCTGCTGCTATCATCGTTCATTCAGTTCTCTACTTCGGTCTCATTTGCGTTTTCTTGCTTGCCATCAAGGTTCATCTCTATATTGGTTCCTAA

mRNA sequence

ATGGCTGATTGGGGGCCGGTTTTTGTAGCTGTGATTCTGTTTGTTTTGCTAACTCCAGGTCTGCTGTTTCAGCTTCCTGGCAACCGCAGGTGCTTGGAGTTCGGCAACTTTCACACCAGTGCTGCTGCTATCATCGTTCATTCAGTTCTCTACTTCGGTCTCATTTGCGTTTTCTTGCTTGCCATCAAGGTTCATCTCTATATTGGTTCCTAA

Coding sequence (CDS)

ATGGCTGATTGGGGGCCGGTTTTTGTAGCTGTGATTCTGTTTGTTTTGCTAACTCCAGGTCTGCTGTTTCAGCTTCCTGGCAACCGCAGGTGCTTGGAGTTCGGCAACTTTCACACCAGTGCTGCTGCTATCATCGTTCATTCAGTTCTCTACTTCGGTCTCATTTGCGTTTTCTTGCTTGCCATCAAGGTTCATCTCTATATTGGTTCCTAA

Protein sequence

MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLLAIKVHLYIGS
Homology
[Close]
BLAST of Cp4.1LG01g11910 vs. TrEMBL
Match: A0A0A0KAG8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G095300 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 9.6e-31
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60
          MADWGP+FVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHS+LYFGLICVFLL
Sbjct: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLL 60

Query: 61 AIKVHLYIGS 71
          AIKVHLYIGS
Sbjct: 61 AIKVHLYIGS 70

[Close]
BLAST of Cp4.1LG01g11910 vs. TrEMBL
Match: A0A067K3J9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17983 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 7.9e-25
Identity = 55/69 (79.71%), Postives = 65/69 (94.20%), Query Frame = 1 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60
          M+DWGPVFVAVILFVLLTPGLLFQ+PGNRRC+EFGNF TS A+I+VHS+LYF L+CVF L
Sbjct: 1  MSDWGPVFVAVILFVLLTPGLLFQVPGNRRCVEFGNFQTSGASIMVHSLLYFALVCVFFL 60

Query: 61 AIKVHLYIG 70
          A++VHLY+G
Sbjct: 61 ALRVHLYLG 69

[Close]
BLAST of Cp4.1LG01g11910 vs. TrEMBL
Match: A0A061E622_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_008724 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 7.9e-25
Identity = 56/69 (81.16%), Postives = 66/69 (95.65%), Query Frame = 1 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60
          M+DWGPVFVAV+LFVLLTPGLLFQ+PG+ RC++FGNF TS A+I+VHS+LYFGLICVFLL
Sbjct: 1  MSDWGPVFVAVVLFVLLTPGLLFQVPGHLRCVDFGNFKTSGASILVHSLLYFGLICVFLL 60

Query: 61 AIKVHLYIG 70
          AIKVHLY+G
Sbjct: 61 AIKVHLYLG 69

[Close]
BLAST of Cp4.1LG01g11910 vs. TrEMBL
Match: A0A0D2T1M9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G165700 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.0e-24
Identity = 53/69 (76.81%), Postives = 66/69 (95.65%), Query Frame = 1 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60
          M+DWGPVFVA++LFVLLTPGLLFQ+PG+ RC+EFGNF TS A++++HS+LYFGLICVFLL
Sbjct: 1  MSDWGPVFVAMVLFVLLTPGLLFQVPGHHRCVEFGNFKTSGASVLIHSLLYFGLICVFLL 60

Query: 61 AIKVHLYIG 70
          A+KVHLY+G
Sbjct: 61 AVKVHLYLG 69

[Close]
BLAST of Cp4.1LG01g11910 vs. TrEMBL
Match: A0A0D2TRC2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G176700 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.0e-24
Identity = 55/69 (79.71%), Postives = 66/69 (95.65%), Query Frame = 1 

Query: 1   MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60
           M+DWGP+ VA++LFVLLTPGLLFQ+PG+ RC+EFGNF TSAA+I+VHS+LYFGLICVFLL
Sbjct: 49  MSDWGPIIVALVLFVLLTPGLLFQVPGHHRCVEFGNFKTSAASILVHSLLYFGLICVFLL 108

Query: 61  AIKVHLYIG 70
           AIKVHLY+G
Sbjct: 109 AIKVHLYLG 117

[Close]
BLAST of Cp4.1LG01g11910 vs. TAIR10
Match: AT5G08391.1 (AT5G08391.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 110.9 bits (276), Expect = 3.2e-25
Identity = 50/69 (72.46%), Postives = 62/69 (89.86%), Query Frame = 1 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60
          M+DWGPV V VILFV+LTPGLLFQLPG ++ +EFGNF TSA ++IVHS+LYF L+CVFLL
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 61 AIKVHLYIG 70
          A+K+H+YIG
Sbjct: 61 ALKIHIYIG 69

[Close]
BLAST of Cp4.1LG01g11910 vs. TAIR10
Match: AT3G48660.1 (AT3G48660.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 99.4 bits (246), Expect = 9.5e-22
Identity = 45/70 (64.29%), Postives = 59/70 (84.29%), Query Frame = 1 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60
          MADWGPV VAVILFVLLTPGLLFQ+P   R +EFGN  TS A+I+VH++++FGLI +F +
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 AIKVHLYIGS 71
          AI++H+Y G+
Sbjct: 61 AIRLHIYTGT 70

[Close]
BLAST of Cp4.1LG01g11910 vs. TAIR10
Match: AT5G63500.1 (AT5G63500.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 95.9 bits (237), Expect = 1.1e-20
Identity = 43/69 (62.32%), Postives = 57/69 (82.61%), Query Frame = 1 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60
          MADWGPV +AVILFV+L+PGLLFQ+P   R +EFGN  TS A+I+VH++++FGLI +F +
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 AIKVHLYIG 70
          AI VH+Y G
Sbjct: 61 AINVHIYSG 69

[Close]
BLAST of Cp4.1LG01g11910 vs. TAIR10
Match: AT3G27030.1 (AT3G27030.1 unknown protein)

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-19
Identity = 41/66 (62.12%), Postives = 54/66 (81.82%), Query Frame = 1 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60
          M DWGPVFVAV LFVLLTPGLL Q+PG  R +EFG F TS  ++IVH+++YF L+C+ LL
Sbjct: 1  MPDWGPVFVAVTLFVLLTPGLLIQVPGRGRVVEFGTFQTSGLSVIVHTLIYFTLVCILLL 60

Query: 61 AIKVHL 67
          A+++H+
Sbjct: 61 ALQIHI 66

[Close]
BLAST of Cp4.1LG01g11910 vs. TAIR10
Match: AT3G01940.1 (AT3G01940.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 85.9 bits (211), Expect = 1.1e-17
Identity = 39/67 (58.21%), Postives = 55/67 (82.09%), Query Frame = 1 

Query: 2  ADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLLA 61
          ADWGPV VAV+LFV+L+PGLLFQLP  RR LE GN  TS  +I+VH++L+F +I + ++A
Sbjct: 4  ADWGPVAVAVVLFVVLSPGLLFQLPARRRVLECGNMTTSGISILVHAILFFAIITILVIA 63

Query: 62 IKVHLYI 69
          I++H++I
Sbjct: 64 IQIHIHI 70

[Close]
BLAST of Cp4.1LG01g11910 vs. NCBI nr
Match: gi|778711887|ref|XP_011656810.1| (PREDICTED: uncharacterized protein LOC101208994 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 1.4e-30
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60
          MADWGP+FVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHS+LYFGLICVFLL
Sbjct: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLL 60

Query: 61 AIKVHLYIGS 71
          AIKVHLYIGS
Sbjct: 61 AIKVHLYIGS 70

[Close]
BLAST of Cp4.1LG01g11910 vs. NCBI nr
Match: gi|659119791|ref|XP_008459846.1| (PREDICTED: uncharacterized protein LOC103498846 [Cucumis melo])

HSP 1 Score: 139.0 bits (349), Expect = 3.1e-30
Identity = 67/70 (95.71%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60
          MADWGP+FVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAA+IIVHS+LYFGLICVFLL
Sbjct: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAASIIVHSILYFGLICVFLL 60

Query: 61 AIKVHLYIGS 71
          AIKVHLYIGS
Sbjct: 61 AIKVHLYIGS 70

[Close]
BLAST of Cp4.1LG01g11910 vs. NCBI nr
Match: gi|802724374|ref|XP_012085706.1| (PREDICTED: uncharacterized protein LOC105644831 [Jatropha curcas])

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-24
Identity = 55/69 (79.71%), Postives = 65/69 (94.20%), Query Frame = 1 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60
          M+DWGPVFVAVILFVLLTPGLLFQ+PGNRRC+EFGNF TS A+I+VHS+LYF L+CVF L
Sbjct: 1  MSDWGPVFVAVILFVLLTPGLLFQVPGNRRCVEFGNFQTSGASIMVHSLLYFALVCVFFL 60

Query: 61 AIKVHLYIG 70
          A++VHLY+G
Sbjct: 61 ALRVHLYLG 69

[Close]
BLAST of Cp4.1LG01g11910 vs. NCBI nr
Match: gi|590692078|ref|XP_007043960.1| (Uncharacterized protein TCM_008724 [Theobroma cacao])

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-24
Identity = 56/69 (81.16%), Postives = 66/69 (95.65%), Query Frame = 1 

Query: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60
          M+DWGPVFVAV+LFVLLTPGLLFQ+PG+ RC++FGNF TS A+I+VHS+LYFGLICVFLL
Sbjct: 1  MSDWGPVFVAVVLFVLLTPGLLFQVPGHLRCVDFGNFKTSGASILVHSLLYFGLICVFLL 60

Query: 61 AIKVHLYIG 70
          AIKVHLY+G
Sbjct: 61 AIKVHLYLG 69

[Close]
BLAST of Cp4.1LG01g11910 vs. NCBI nr
Match: gi|823251864|ref|XP_012458563.1| (PREDICTED: uncharacterized protein LOC105779354 [Gossypium raimondii])

HSP 1 Score: 120.2 bits (300), Expect = 1.5e-24
Identity = 55/69 (79.71%), Postives = 66/69 (95.65%), Query Frame = 1 

Query: 1   MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60
           M+DWGP+ VA++LFVLLTPGLLFQ+PG+ RC+EFGNF TSAA+I+VHS+LYFGLICVFLL
Sbjct: 49  MSDWGPIIVALVLFVLLTPGLLFQVPGHHRCVEFGNFKTSAASILVHSLLYFGLICVFLL 108

Query: 61  AIKVHLYIG 70
           AIKVHLY+G
Sbjct: 109 AIKVHLYLG 117

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g11910 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g11910 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAG8_CUCSA9.6e-3197.14Uncharacterized protein OS=Cucumis sativus GN=Csa_6G095300 PE=4 SV=1[more]
A0A067K3J9_JATCU7.9e-2579.71Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17983 PE=4 SV=1[more]
A0A061E622_THECC7.9e-2581.16Uncharacterized protein OS=Theobroma cacao GN=TCM_008724 PE=4 SV=1[more]
A0A0D2T1M9_GOSRA1.0e-2476.81Uncharacterized protein OS=Gossypium raimondii GN=B456_008G165700 PE=4 SV=1[more]
A0A0D2TRC2_GOSRA1.0e-2479.71Uncharacterized protein OS=Gossypium raimondii GN=B456_012G176700 PE=4 SV=1[more]
BLAST of Cp4.1LG01g11910 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G08391.13.2e-2572.46 Protein of unknown function (DUF 3339)[more]
AT3G48660.19.5e-2264.29 Protein of unknown function (DUF 3339)[more]
AT5G63500.11.1e-2062.32 Protein of unknown function (DUF 3339)[more]
AT3G27030.11.2e-1962.12 unknown protein[more]
AT3G01940.11.1e-1758.21 Protein of unknown function (DUF 3339)[more]
BLAST of Cp4.1LG01g11910 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778711887|ref|XP_011656810.1|1.4e-3097.14PREDICTED: uncharacterized protein LOC101208994 [Cucumis sativus][more]
gi|659119791|ref|XP_008459846.1|3.1e-3095.71PREDICTED: uncharacterized protein LOC103498846 [Cucumis melo][more]
gi|802724374|ref|XP_012085706.1|1.1e-2479.71PREDICTED: uncharacterized protein LOC105644831 [Jatropha curcas][more]
gi|590692078|ref|XP_007043960.1|1.1e-2481.16Uncharacterized protein TCM_008724 [Theobroma cacao][more]
gi|823251864|ref|XP_012458563.1|1.5e-2479.71PREDICTED: uncharacterized protein LOC105779354 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021775DUF3339
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g11910.1Cp4.1LG01g11910.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021775Protein of unknown function DUF3339PFAMPF11820DUF3339coord: 1..67
score: 2.2
NoneNo IPR availablePANTHERPTHR33128FAMILY NOT NAMEDcoord: 1..69
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g11910CmaCh17G014400Cucurbita maxima (Rimu)cmacpeB398
Cp4.1LG01g11910Cla000689Watermelon (97103) v1cpewmB471
Cp4.1LG01g11910Csa6G095300Cucumber (Chinese Long) v2cpecuB464
Cp4.1LG01g11910MELO3C022313Melon (DHL92) v3.5.1cpemeB389
Cp4.1LG01g11910CSPI06G07850Wild cucumber (PI 183967)cpecpiB465
Cp4.1LG01g11910Carg11600Silver-seed gourdcarcpeB0024
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g11910Cucumber (Gy14) v2cgybcpeB646
Cp4.1LG01g11910Cucumber (Gy14) v2cgybcpeB802
Cp4.1LG01g11910Melon (DHL92) v3.6.1cpemedB441
Cp4.1LG01g11910Melon (DHL92) v3.6.1cpemedB449
Cp4.1LG01g11910Silver-seed gourdcarcpeB0938
Cp4.1LG01g11910Silver-seed gourdcarcpeB1259
Cp4.1LG01g11910Cucumber (Chinese Long) v3cpecucB0541
Cp4.1LG01g11910Cucumber (Chinese Long) v3cpecucB0573
Cp4.1LG01g11910Wax gourdcpewgoB0495
Cp4.1LG01g11910Wax gourdcpewgoB0553
Cp4.1LG01g11910Cucurbita pepo (Zucchini)cpecpeB331
Cp4.1LG01g11910Cucurbita pepo (Zucchini)cpecpeB374
Cp4.1LG01g11910Cucumber (Gy14) v1cgycpeB0387
Cp4.1LG01g11910Cucumber (Gy14) v1cgycpeB0913
Cp4.1LG01g11910Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g11910Cucurbita maxima (Rimu)cmacpeB722
Cp4.1LG01g11910Cucurbita maxima (Rimu)cmacpeB920
Cp4.1LG01g11910Cucurbita moschata (Rifu)cmocpeB360
Cp4.1LG01g11910Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g11910Cucurbita moschata (Rifu)cmocpeB674
Cp4.1LG01g11910Cucurbita moschata (Rifu)cmocpeB856
Cp4.1LG01g11910Wild cucumber (PI 183967)cpecpiB437
Cp4.1LG01g11910Cucumber (Chinese Long) v2cpecuB437
Cp4.1LG01g11910Bottle gourd (USVL1VR-Ls)cpelsiB312
Cp4.1LG01g11910Bottle gourd (USVL1VR-Ls)cpelsiB354
Cp4.1LG01g11910Watermelon (Charleston Gray)cpewcgB402
Cp4.1LG01g11910Watermelon (Charleston Gray)cpewcgB409
Cp4.1LG01g11910Watermelon (97103) v1cpewmB417
Cp4.1LG01g11910Melon (DHL92) v3.5.1cpemeB365
Cp4.1LG01g11910Silver-seed gourdcarcpeB0127