Cp4.1LG01g09150 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g09150
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing family protein
LocationCp4.1LG01 : 4500640 .. 4501921 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGTCAAACCTCCGGAACTGAATCGGCGGCACCTGAAACAGACAACGGCGAACCACTGCAGGTGAATAAAGTGCAGCCACCGGAAAATATACACTTCGTATTTTCAGGGAATTCCAAAATTCTAATGTAAGAGAAAACGGCATGCCATTGCTTCGTTTTACTTGAGCTTTCCCCATGAACACTGCAAATGCATCAATTCTCCGCTGTTCTACAAAGCTTTCGGCACGTTCTGAAAACATGTATTGCCCAGAGAGACCTCCGTACTGGAAAGTTCCTCCATGCTCTCTATATCAAGTCCTTCGTCCCCGCATCCACATATATCTCCAACCACTTCATTCTTCTTTACTCCAAATGTCGCCGCCTCTCCGCTGCTCGTCGGGTCTTCGATCAGACCCAGGAATGCAATATCTTTTCCTTCAACGCCCTGATTGCTGCATATGCGAAAGAATCGTTTGTCGAAGTTGCACGCGAACTGTTTGATAAAATGTCCCAACCAGACCCTATTTCGTATAACACTTTAATTGCTGCATATGCTCAACGTGGGGATGTTCAGTCTGCTTTTCAGTTGTTTGTGGAGATGAGAGAGGCCTTACTTGACATGGATGGGTTTACCCTTTCTGGTATAATTACTGCTTGTGGCGATGATGTTGCTTTGATTAGGCAGTTGCACGCACTGAGTGTTGCGGCTGGGTTCGATTGTTATGCGTCTGTTGGTAATGCACTCATTACATATTACAGCAAAAATGGGTTTTTGAATGAGGCCCAACGGATTTTTTATGGCATGGGTGAGGATAAAGATGAAGTCTCATGGAATTCGATGGTTGTGGCATATATGCAGCATCGAGAGGGGTCTAAGGCTCTTGGATTGTACATGGAAATGACTCTGAGGGGCTTGGTTGTTGACATGTTTACTTTAGCAAGCGTCTTGACGGCATTTACTAATGTGCAGGACTTATCAGGCGGGCTTCAGTTTCATGCCAAATTGATAAAGTCTGGCTACCATCAGAATTGTCATGTGGGTAGTGGTCTGATTGATTTGTATTCAAAATGTGGTGGTTCTATGCTGAGTTGTAGAAAAGTTTTTGATGAAATCTGCAAGCCAGATTTGGTTCTTTGGAATACAATGATTTCAGGATACTCTCTGTTTGAGGAGTTTTCTGATGAAGCTCTTGAATGTTTCCGGAGGTTGCAAGGTGTTGGCCACCTCCCTGACGATTGCAGCCTTGTTTGCGTAATCAGTGCCTGTGCGAATATGTCATCGCCCTCTCAAGGAAGACAA

mRNA sequence

ATGCGCTTTCGGCACGTTCTGAAAACATGTATTGCCCAGAGAGACCTCCGTACTGGAAAGTTCCTCCATGCTCTCTATATCAAGTCCTTCGTCCCCGCATCCACATATATCTCCAACCACTTCATTCTTCTTTACTCCAAATGTCGCCGCCTCTCCGCTGCTCGTCGGGTCTTCGATCAGACCCAGGAATGCAATATCTTTTCCTTCAACGCCCTGATTGCTGCATATGCGAAAGAATCGTTTGTCGAAGTTGCACGCGAACTGTTTGATAAAATGTCCCAACCAGACCCTATTTCGTATAACACTTTAATTGCTGCATATGCTCAACGTGGGGATGTTCAGTCTGCTTTTCAGTTGTTTGTGGAGATGAGAGAGGCCTTACTTGACATGGATGGGTTTACCCTTTCTGGTATAATTACTGCTTGTGGCGATGATGTTGCTTTGATTAGGCAGTTGCACGCACTGAGTGTTGCGGCTGGGTTCGATTGTTATGCGTCTGTTGGTAATGCACTCATTACATATTACAGCAAAAATGGGTTTTTGAATGAGGCCCAACGGATTTTTTATGGCATGGGTGAGGATAAAGATGAAGTCTCATGGAATTCGATGGTTGTGGCATATATGCAGCATCGAGAGGGGTCTAAGGCTCTTGGATTGTACATGGAAATGACTCTGAGGGGCTTGGTTGTTGACATCCTTGTTTGCGTAATCAGTGCCTGTGCGAATATGTCATCGCCCTCTCAAGGAAGACAA

Coding sequence (CDS)

ATGCGCTTTCGGCACGTTCTGAAAACATGTATTGCCCAGAGAGACCTCCGTACTGGAAAGTTCCTCCATGCTCTCTATATCAAGTCCTTCGTCCCCGCATCCACATATATCTCCAACCACTTCATTCTTCTTTACTCCAAATGTCGCCGCCTCTCCGCTGCTCGTCGGGTCTTCGATCAGACCCAGGAATGCAATATCTTTTCCTTCAACGCCCTGATTGCTGCATATGCGAAAGAATCGTTTGTCGAAGTTGCACGCGAACTGTTTGATAAAATGTCCCAACCAGACCCTATTTCGTATAACACTTTAATTGCTGCATATGCTCAACGTGGGGATGTTCAGTCTGCTTTTCAGTTGTTTGTGGAGATGAGAGAGGCCTTACTTGACATGGATGGGTTTACCCTTTCTGGTATAATTACTGCTTGTGGCGATGATGTTGCTTTGATTAGGCAGTTGCACGCACTGAGTGTTGCGGCTGGGTTCGATTGTTATGCGTCTGTTGGTAATGCACTCATTACATATTACAGCAAAAATGGGTTTTTGAATGAGGCCCAACGGATTTTTTATGGCATGGGTGAGGATAAAGATGAAGTCTCATGGAATTCGATGGTTGTGGCATATATGCAGCATCGAGAGGGGTCTAAGGCTCTTGGATTGTACATGGAAATGACTCTGAGGGGCTTGGTTGTTGACATCCTTGTTTGCGTAATCAGTGCCTGTGCGAATATGTCATCGCCCTCTCAAGGAAGACAA

Protein sequence

MRFRHVLKTCIAQRDLRTGKFLHALYIKSFVPASTYISNHFILLYSKCRRLSAARRVFDQTQECNIFSFNALIAAYAKESFVEVARELFDKMSQPDPISYNTLIAAYAQRGDVQSAFQLFVEMREALLDMDGFTLSGIITACGDDVALIRQLHALSVAAGFDCYASVGNALITYYSKNGFLNEAQRIFYGMGEDKDEVSWNSMVVAYMQHREGSKALGLYMEMTLRGLVVDILVCVISACANMSSPSQGRQ
Homology
[Close]
BLAST of Cp4.1LG01g09150 vs. Swiss-Prot
Match: PP274_ARATH (Pentatricopeptide repeat-containing protein At3g49710 OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 3.3e-74
Identity = 139/251 (55.38%), Postives = 181/251 (72.11%), Query Frame = 1 

Query: 3   FRHVLKTCIAQRDLRTGKFLHALYIKSFVPASTYISNHFILLYSKCRRLSAARRVFDQTQ 62
           FR +L   +A+RDL TGK LHALY+KS V +STY+SNHF+ LYSKC RLS AR  F  T+
Sbjct: 11  FRDLLLKSVAERDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTE 70

Query: 63  ECNIFSFNALIAAYAKESFVEVARELFDKMSQPDPISYNTLIAAYAQRGDVQSAFQLFVE 122
           E N+FS+N ++ AYAK+S + +AR+LFD++ QPD +SYNTLI+ YA   +  +A  LF  
Sbjct: 71  EPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKR 130

Query: 123 MREALLDMDGFTLSGIITACGDDVALIRQLHALSVAAGFDCYASVGNALITYYSKNGFLN 182
           MR+   ++DGFTLSG+I AC D V LI+QLH  SV+ GFD Y+SV NA +TYYSK G L 
Sbjct: 131 MRKLGFEVDGFTLSGLIAACCDRVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLR 190

Query: 183 EAQRIFYGMGEDKDEVSWNSMVVAYMQHREGSKALGLYMEMTLRGLVVDI--LVCVISAC 242
           EA  +FYGM E +DEVSWNSM+VAY QH+EG+KAL LY EM  +G  +D+  L  V++A 
Sbjct: 191 EAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNAL 250

Query: 243 ANMSSPSQGRQ 252
            ++     GRQ
Sbjct: 251 TSLDHLIGGRQ 261

[Close]
BLAST of Cp4.1LG01g09150 vs. Swiss-Prot
Match: PP256_ARATH (Pentatricopeptide repeat-containing protein At3g26540 OS=Arabidopsis thaliana GN=PCMP-A5 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 4.9e-30
Identity = 78/248 (31.45%), Postives = 123/248 (49.60%), Query Frame = 1 

Query: 6   VLKTCIAQRDLRTGKFLHALYIKSFVPASTYISNHFILLYSKCRRLSAARRVFDQTQECN 65
           V+  C     L  GK +HA+ +K  V A T +S     +Y KC RL +ARRVFDQT+  +
Sbjct: 269 VMLACSRSLALEVGKVIHAIAVKLSVVADTVVSTSVFDMYVKCDRLESARRVFDQTRSKD 328

Query: 66  IFSFNALIAAYAKESFVEVARELFDKMSQPDPISYNTLIAAYAQRGDVQSAFQLFVEMRE 125
           + S+ + ++ YA       ARELFD M + + +S+N ++  Y    +   A      MR+
Sbjct: 329 LKSWTSAMSGYAMSGLTREARELFDLMPERNIVSWNAMLGGYVHAHEWDEALDFLTLMRQ 388

Query: 126 ALLDMDGFTLSGIITACG--DDVALIRQLHALSVAAGFDCYASVGNALITYYSKNGFLNE 185
            + ++D  TL  I+  C    DV + +Q H      G+D    V NAL+  Y K G L  
Sbjct: 389 EIENIDNVTLVWILNVCSGISDVQMGKQAHGFIYRHGYDTNVIVANALLDMYGKCGTLQS 448

Query: 186 AQRIFYGMGEDKDEVSWNSMVVAYMQHREGSKALGLYMEMTLRGLVVD-ILVCVISACAN 245
           A   F  M E +DEVSWN+++    +     +AL  +  M +        L  +++ CAN
Sbjct: 449 ANIWFRQMSELRDEVSWNALLTGVARVGRSEQALSFFEGMQVEAKPSKYTLATLLAGCAN 508

Query: 246 MSSPSQGR 251
           + + + G+
Sbjct: 509 IPALNLGK 516

[Close]
BLAST of Cp4.1LG01g09150 vs. Swiss-Prot
Match: PP308_ARATH (Pentatricopeptide repeat-containing protein At4g14050, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2 SV=3)

HSP 1 Score: 132.1 bits (331), Expect = 8.4e-30
Identity = 85/254 (33.46%), Postives = 133/254 (52.36%), Query Frame = 1 

Query: 3   FRHVLKTCIAQRDLRTGKFLHALYIKSFVPASTYISNHFILLYSKCRRLSAARRVFDQTQ 62
           F  ++K C     +  G+ +H  +I S       + +  + +Y+KC  L++A+ VFD  +
Sbjct: 108 FSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIR 167

Query: 63  ECNIFSFNALIAAYAKESFVEVARELFDKMSQPDPISYNTLIAAYAQRGDVQSAFQLFVE 122
             N  S+ A+++ YAK    E A ELF  +   +  S+  LI+ + Q G    AF +F E
Sbjct: 168 VKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTE 227

Query: 123 MREALLD-MDGFTLSGIITACGDDVALI--RQLHALSVAAGFDCYASVGNALITYYSKNG 182
           MR   +D +D   LS I+ AC +  A I  RQ+H L +A GFD    + NALI  Y+K  
Sbjct: 228 MRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCS 287

Query: 183 FLNEAQRIFYGMGEDKDEVSWNSMVVAYMQHREGSKALGLYMEMTLRGLVVD--ILVCVI 242
            +  A+ IF  M   +D VSW S++V   QH +  KAL LY +M   G+  +    V +I
Sbjct: 288 DVIAAKDIFSRM-RHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLI 347

Query: 243 SACANMSSPSQGRQ 252
            AC+++    +GR+
Sbjct: 348 YACSHVGFVEKGRE 360

[Close]
BLAST of Cp4.1LG01g09150 vs. Swiss-Prot
Match: PP151_ARATH (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 9.3e-29
Identity = 78/254 (30.71%), Postives = 140/254 (55.12%), Query Frame = 1 

Query: 3   FRHVLKTCIAQR-DLRTGKFLHALYIKSFVPASTYISNHFILLYSKCRRLSAARRVFDQT 62
           F  +L +CI  +      +++HA  IKS      +I N  I  YSKC  L   R+VFD+ 
Sbjct: 22  FAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKM 81

Query: 63  QECNIFSFNALIAAYAKESFVEVARELFDKMSQPDPISYNTLIAAYAQRGDVQSAFQLFV 122
            + NI+++N+++    K  F++ A  LF  M + D  ++N++++ +AQ    + A   F 
Sbjct: 82  PQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFA 141

Query: 123 EMREALLDMDGFTLSGIITACG--DDVALIRQLHALSVAAGFDCYASVGNALITYYSKNG 182
            M +    ++ ++ + +++AC   +D+    Q+H+L   + F     +G+AL+  YSK G
Sbjct: 142 MMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCG 201

Query: 183 FLNEAQRIFYGMGEDKDEVSWNSMVVAYMQHREGSKALGLYMEMTLRGLVVD--ILVCVI 242
            +N+AQR+F  MG D++ VSWNS++  + Q+    +AL ++  M    +  D   L  VI
Sbjct: 202 NVNDAQRVFDEMG-DRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVI 261

Query: 243 SACANMSSPSQGRQ 252
           SACA++S+   G++
Sbjct: 262 SACASLSAIKVGQE 274

[Close]
BLAST of Cp4.1LG01g09150 vs. Swiss-Prot
Match: PPR57_ARATH (Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.2e-28
Identity = 79/250 (31.60%), Postives = 134/250 (53.60%), Query Frame = 1 

Query: 6   VLKTCIAQRDLRTGKFLHALYIKSFVPASTYISNHFILLYSKCRRLSAARRVFDQTQECN 65
           V++ C     L+ GK +HA Y+      S +  N  + LY KC +   AR +F++    +
Sbjct: 292 VIRACATAGLLQLGKQVHA-YVLRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKD 351

Query: 66  IFSFNALIAAYAKESFVEVARELFDKMSQPDPISYNTLIAAYAQRGDVQSAFQLFVEMRE 125
           + S+NAL++ Y     +  A+ +F +M + + +S+  +I+  A+ G  +   +LF  M+ 
Sbjct: 352 LVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKR 411

Query: 126 ALLDMDGFTLSGIITACGDDVALI--RQLHALSVAAGFDCYASVGNALITYYSKNGFLNE 185
              +   +  SG I +C    A    +Q HA  +  GFD   S GNALIT Y+K G + E
Sbjct: 412 EGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEE 471

Query: 186 AQRIFYGMGEDKDEVSWNSMVVAYMQHREGSKALGLYMEMTLRGLVVD--ILVCVISACA 245
           A+++F  M    D VSWN+++ A  QH  G++A+ +Y EM  +G+  D   L+ V++AC+
Sbjct: 472 ARQVFRTM-PCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACS 531

Query: 246 NMSSPSQGRQ 252
           +     QGR+
Sbjct: 532 HAGLVDQGRK 539

[Close]
BLAST of Cp4.1LG01g09150 vs. TrEMBL
Match: A0A0A0L2J0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G508540 PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 3.4e-102
Identity = 191/251 (76.10%), Postives = 213/251 (84.86%), Query Frame = 1 

Query: 3   FRHVLKTCIAQRDLRTGKFLHALYIKSFVPASTYISNHFILLYSKCRRLSAARRVFDQTQ 62
           FR  LKTCIA RDLRTGK LHALYIKSFVP STY+SNHF+LLYSKCRRLSAARRVFD T 
Sbjct: 11  FRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTH 70

Query: 63  ECNIFSFNALIAAYAKESFVEVARELFDKMSQPDPISYNTLIAAYAQRGDVQSAFQLFVE 122
           +CN+FSFN LI+AYAKES+VEVA +LFD+M QPD +SYNTLIAAYA+RGD Q AFQLF+E
Sbjct: 71  DCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLE 130

Query: 123 MREALLDMDGFTLSGIITACGDDVALIRQLHALSVAAGFDCYASVGNALITYYSKNGFLN 182
           MREA LDMDGFTLSGIITACG +V LIRQLHALSV  G D Y SVGNALIT YSKNGFL 
Sbjct: 131 MREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLK 190

Query: 183 EAQRIFYGMGEDKDEVSWNSMVVAYMQHREGSKALGLYMEMTLRGLVVDI--LVCVISAC 242
           EA+RIF+ + ED+DEVSWNSMVVAYMQHREGSKAL LY+EMT+RGL+VDI  L  V++A 
Sbjct: 191 EARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAF 250

Query: 243 ANMSSPSQGRQ 252
            N+     G Q
Sbjct: 251 TNVQDLLGGLQ 261

[Close]
BLAST of Cp4.1LG01g09150 vs. TrEMBL
Match: M5WRA0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022107mg PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 8.3e-85
Identity = 156/239 (65.27%), Postives = 190/239 (79.50%), Query Frame = 1 

Query: 3   FRHVLKTCIAQRDLRTGKFLHALYIKSFVPASTYISNHFILLYSKCRRLSAARRVFDQTQ 62
           FRH+LKTCIA+RDL TGK LHALY KS +P STY+SNHFILLYSKC RLS+AR  FDQTQ
Sbjct: 11  FRHLLKTCIAERDLFTGKSLHALYFKSLLPPSTYLSNHFILLYSKCGRLSSARNAFDQTQ 70

Query: 63  ECNIFSFNALIAAYAKESFVEVARELFDKMSQPDPISYNTLIAAYAQRGDVQSAFQLFVE 122
           E N+FSFNA++AAYAKES   +A ++FDK+  PD +SYNTLI+AYA RG+ + A  LF  
Sbjct: 71  EPNVFSFNAIVAAYAKESHTHIAHQMFDKIPHPDLVSYNTLISAYADRGETEPALSLFTG 130

Query: 123 MREALLDMDGFTLSGIITACGDDVALIRQLHALSVAAGFDCYASVGNALITYYSKNGFLN 182
           MR   LDMDGFT+S +IT C DD+ LIRQLH+++V+ GFD Y SV NAL+TYYSKNGFL 
Sbjct: 131 MRNMGLDMDGFTISAVITGCCDDIGLIRQLHSVAVSGGFDSYVSVNNALVTYYSKNGFLG 190

Query: 183 EAQRIFYGMGEDKDEVSWNSMVVAYMQHREGSKALGLYMEMTLRGLVVDI--LVCVISA 240
           EA+R+FY MGE +DEVSWNSM+VAY QHR+G +AL L+ EM   GL VD+  L  V++A
Sbjct: 191 EAKRVFYVMGEMRDEVSWNSMIVAYGQHRQGLRALALFQEMVRMGLKVDMFTLASVLTA 249

[Close]
BLAST of Cp4.1LG01g09150 vs. TrEMBL
Match: F6HJT7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0771g00010 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 1.7e-82
Identity = 159/252 (63.10%), Postives = 195/252 (77.38%), Query Frame = 1 

Query: 2   RFRHVLKTCIAQRDLRTGKFLHALYIKSFVPASTYISNHFILLYSKCRRLSAARRVFDQT 61
           RFRH+LKTCIA+RDL TGK LH+LYIKSF+P STY SNHFILLYSKC RL+ AR+ F   
Sbjct: 10  RFRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDI 69

Query: 62  QECNIFSFNALIAAYAKESFVEVARELFDKMSQPDPISYNTLIAAYAQRGDVQSAFQLFV 121
            + N+FSFNA+IAAYAKES   +A +LFD++ +PD +SYNTLI+AYA  G+   A  LF 
Sbjct: 70  SDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFS 129

Query: 122 EMREALLDMDGFTLSGIITACGDDVALIRQLHALSVAAGFDCYASVGNALITYYSKNGFL 181
            MRE  LDMDGFTLS +ITAC DDV LI QLH+++V++GFD Y SV NAL+TYY KNG L
Sbjct: 130 GMREMGLDMDGFTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDL 189

Query: 182 NEAQRIFYGMGEDKDEVSWNSMVVAYMQHREGSKALGLYMEMTLRGLVVDI--LVCVISA 241
           ++A+R+FYGMG  +DEVSWNSM+VAY QH+EGSKALGL+ EM  RGL VD+  L  V++A
Sbjct: 190 DDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTA 249

Query: 242 CANMSSPSQGRQ 252
              +   S G Q
Sbjct: 250 FTCLEDLSGGLQ 261

[Close]
BLAST of Cp4.1LG01g09150 vs. TrEMBL
Match: A0A058ZT24_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L01988 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 1.7e-82
Identity = 157/251 (62.55%), Postives = 196/251 (78.09%), Query Frame = 1 

Query: 3   FRHVLKTCIAQRDLRTGKFLHALYIKSFVPASTYISNHFILLYSKCRRLSAARRVFDQTQ 62
           FRH+LK CIA+RD  TGK LHALYIKS VP STY+SNHFILLYSKCRRL AARR FD T 
Sbjct: 11  FRHLLKHCIAERDFLTGKSLHALYIKSLVPPSTYLSNHFILLYSKCRRLLAARRAFDLTP 70

Query: 63  ECNIFSFNALIAAYAKESFVEVARELFDKMSQPDPISYNTLIAAYAQRGDVQSAFQLFVE 122
             N+FSFNA++AAYAKES + VAR+LFD++  PD +SYNT+++A+A RG++  AF LF  
Sbjct: 71  NPNVFSFNAIVAAYAKESQMMVARQLFDRIPAPDLVSYNTMLSAFADRGEMGPAFSLFAG 130

Query: 123 MREALLDMDGFTLSGIITACGDDVALIRQLHALSVAAGFDCYASVGNALITYYSKNGFLN 182
           MRE  L MDGFTLS ++TACGDDV+L+RQLH+ +V++G D Y S  NAL+TYYSKNG+LN
Sbjct: 131 MREMGLGMDGFTLSAVVTACGDDVSLMRQLHSFAVSSGLDSYVSPSNALLTYYSKNGYLN 190

Query: 183 EAQRIFYGMGEDKDEVSWNSMVVAYMQHREGSKALGLYMEMTLRGLVVDI--LVCVISAC 242
           EA+R+F  MGE +DEVSWNSM+VAY QHREG +AL L+ EM  +G+ VD+  L  V++A 
Sbjct: 191 EAKRMFDEMGEARDEVSWNSMIVAYGQHREGLRALELFQEMIRKGMYVDMYTLASVLTAF 250

Query: 243 ANMSSPSQGRQ 252
             +S    G Q
Sbjct: 251 TCVSDLVGGLQ 261

[Close]
BLAST of Cp4.1LG01g09150 vs. TrEMBL
Match: A5BL66_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037837 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 1.1e-81
Identity = 158/252 (62.70%), Postives = 194/252 (76.98%), Query Frame = 1 

Query: 2   RFRHVLKTCIAQRDLRTGKFLHALYIKSFVPASTYISNHFILLYSKCRRLSAARRVFDQT 61
           RFRH+LKTCIA+RDL TGK LH+LYIKSF+P STY SNHFILLYSKC RL+ AR+ F   
Sbjct: 10  RFRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDI 69

Query: 62  QECNIFSFNALIAAYAKESFVEVARELFDKMSQPDPISYNTLIAAYAQRGDVQSAFQLFV 121
            + N+FSFNA+IAAYAKES   +A +LFD++ +PD +SYNTLI+AYA  G+   A  LF 
Sbjct: 70  SDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFS 129

Query: 122 EMREALLDMDGFTLSGIITACGDDVALIRQLHALSVAAGFDCYASVGNALITYYSKNGFL 181
            MRE  LDMD FTLS +ITAC DDV LI QLH+++V++GFD Y SV NAL+TYY KNG L
Sbjct: 130 GMREMGLDMDXFTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDL 189

Query: 182 NEAQRIFYGMGEDKDEVSWNSMVVAYMQHREGSKALGLYMEMTLRGLVVDI--LVCVISA 241
           ++A+R+FYGMG  +DEVSWNSM+VAY QH+EGSKALGL+ EM  RGL VD+  L  V++A
Sbjct: 190 DDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTA 249

Query: 242 CANMSSPSQGRQ 252
              +   S G Q
Sbjct: 250 FTCLEDLSGGLQ 261

[Close]
BLAST of Cp4.1LG01g09150 vs. TAIR10
Match: AT3G49710.1 (AT3G49710.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 279.6 bits (714), Expect = 1.8e-75
Identity = 139/251 (55.38%), Postives = 181/251 (72.11%), Query Frame = 1 

Query: 3   FRHVLKTCIAQRDLRTGKFLHALYIKSFVPASTYISNHFILLYSKCRRLSAARRVFDQTQ 62
           FR +L   +A+RDL TGK LHALY+KS V +STY+SNHF+ LYSKC RLS AR  F  T+
Sbjct: 11  FRDLLLKSVAERDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTE 70

Query: 63  ECNIFSFNALIAAYAKESFVEVARELFDKMSQPDPISYNTLIAAYAQRGDVQSAFQLFVE 122
           E N+FS+N ++ AYAK+S + +AR+LFD++ QPD +SYNTLI+ YA   +  +A  LF  
Sbjct: 71  EPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKR 130

Query: 123 MREALLDMDGFTLSGIITACGDDVALIRQLHALSVAAGFDCYASVGNALITYYSKNGFLN 182
           MR+   ++DGFTLSG+I AC D V LI+QLH  SV+ GFD Y+SV NA +TYYSK G L 
Sbjct: 131 MRKLGFEVDGFTLSGLIAACCDRVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLR 190

Query: 183 EAQRIFYGMGEDKDEVSWNSMVVAYMQHREGSKALGLYMEMTLRGLVVDI--LVCVISAC 242
           EA  +FYGM E +DEVSWNSM+VAY QH+EG+KAL LY EM  +G  +D+  L  V++A 
Sbjct: 191 EAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNAL 250

Query: 243 ANMSSPSQGRQ 252
            ++     GRQ
Sbjct: 251 TSLDHLIGGRQ 261

[Close]
BLAST of Cp4.1LG01g09150 vs. TAIR10
Match: AT3G26540.1 (AT3G26540.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 132.9 bits (333), Expect = 2.8e-31
Identity = 78/248 (31.45%), Postives = 123/248 (49.60%), Query Frame = 1 

Query: 6   VLKTCIAQRDLRTGKFLHALYIKSFVPASTYISNHFILLYSKCRRLSAARRVFDQTQECN 65
           V+  C     L  GK +HA+ +K  V A T +S     +Y KC RL +ARRVFDQT+  +
Sbjct: 269 VMLACSRSLALEVGKVIHAIAVKLSVVADTVVSTSVFDMYVKCDRLESARRVFDQTRSKD 328

Query: 66  IFSFNALIAAYAKESFVEVARELFDKMSQPDPISYNTLIAAYAQRGDVQSAFQLFVEMRE 125
           + S+ + ++ YA       ARELFD M + + +S+N ++  Y    +   A      MR+
Sbjct: 329 LKSWTSAMSGYAMSGLTREARELFDLMPERNIVSWNAMLGGYVHAHEWDEALDFLTLMRQ 388

Query: 126 ALLDMDGFTLSGIITACG--DDVALIRQLHALSVAAGFDCYASVGNALITYYSKNGFLNE 185
            + ++D  TL  I+  C    DV + +Q H      G+D    V NAL+  Y K G L  
Sbjct: 389 EIENIDNVTLVWILNVCSGISDVQMGKQAHGFIYRHGYDTNVIVANALLDMYGKCGTLQS 448

Query: 186 AQRIFYGMGEDKDEVSWNSMVVAYMQHREGSKALGLYMEMTLRGLVVD-ILVCVISACAN 245
           A   F  M E +DEVSWN+++    +     +AL  +  M +        L  +++ CAN
Sbjct: 449 ANIWFRQMSELRDEVSWNALLTGVARVGRSEQALSFFEGMQVEAKPSKYTLATLLAGCAN 508

Query: 246 MSSPSQGR 251
           + + + G+
Sbjct: 509 IPALNLGK 516

[Close]
BLAST of Cp4.1LG01g09150 vs. TAIR10
Match: AT4G14050.1 (AT4G14050.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 132.1 bits (331), Expect = 4.7e-31
Identity = 85/254 (33.46%), Postives = 133/254 (52.36%), Query Frame = 1 

Query: 3   FRHVLKTCIAQRDLRTGKFLHALYIKSFVPASTYISNHFILLYSKCRRLSAARRVFDQTQ 62
           F  ++K C     +  G+ +H  +I S       + +  + +Y+KC  L++A+ VFD  +
Sbjct: 108 FSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIR 167

Query: 63  ECNIFSFNALIAAYAKESFVEVARELFDKMSQPDPISYNTLIAAYAQRGDVQSAFQLFVE 122
             N  S+ A+++ YAK    E A ELF  +   +  S+  LI+ + Q G    AF +F E
Sbjct: 168 VKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTE 227

Query: 123 MREALLD-MDGFTLSGIITACGDDVALI--RQLHALSVAAGFDCYASVGNALITYYSKNG 182
           MR   +D +D   LS I+ AC +  A I  RQ+H L +A GFD    + NALI  Y+K  
Sbjct: 228 MRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCS 287

Query: 183 FLNEAQRIFYGMGEDKDEVSWNSMVVAYMQHREGSKALGLYMEMTLRGLVVD--ILVCVI 242
            +  A+ IF  M   +D VSW S++V   QH +  KAL LY +M   G+  +    V +I
Sbjct: 288 DVIAAKDIFSRM-RHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLI 347

Query: 243 SACANMSSPSQGRQ 252
            AC+++    +GR+
Sbjct: 348 YACSHVGFVEKGRE 360

[Close]
BLAST of Cp4.1LG01g09150 vs. TAIR10
Match: AT2G13600.1 (AT2G13600.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 128.6 bits (322), Expect = 5.2e-30
Identity = 78/254 (30.71%), Postives = 140/254 (55.12%), Query Frame = 1 

Query: 3   FRHVLKTCIAQR-DLRTGKFLHALYIKSFVPASTYISNHFILLYSKCRRLSAARRVFDQT 62
           F  +L +CI  +      +++HA  IKS      +I N  I  YSKC  L   R+VFD+ 
Sbjct: 22  FAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKM 81

Query: 63  QECNIFSFNALIAAYAKESFVEVARELFDKMSQPDPISYNTLIAAYAQRGDVQSAFQLFV 122
            + NI+++N+++    K  F++ A  LF  M + D  ++N++++ +AQ    + A   F 
Sbjct: 82  PQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFA 141

Query: 123 EMREALLDMDGFTLSGIITACG--DDVALIRQLHALSVAAGFDCYASVGNALITYYSKNG 182
            M +    ++ ++ + +++AC   +D+    Q+H+L   + F     +G+AL+  YSK G
Sbjct: 142 MMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCG 201

Query: 183 FLNEAQRIFYGMGEDKDEVSWNSMVVAYMQHREGSKALGLYMEMTLRGLVVD--ILVCVI 242
            +N+AQR+F  MG D++ VSWNS++  + Q+    +AL ++  M    +  D   L  VI
Sbjct: 202 NVNDAQRVFDEMG-DRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVI 261

Query: 243 SACANMSSPSQGRQ 252
           SACA++S+   G++
Sbjct: 262 SACASLSAIKVGQE 274

[Close]
BLAST of Cp4.1LG01g09150 vs. TAIR10
Match: AT1G25360.1 (AT1G25360.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 128.3 bits (321), Expect = 6.9e-30
Identity = 79/250 (31.60%), Postives = 134/250 (53.60%), Query Frame = 1 

Query: 6   VLKTCIAQRDLRTGKFLHALYIKSFVPASTYISNHFILLYSKCRRLSAARRVFDQTQECN 65
           V++ C     L+ GK +HA Y+      S +  N  + LY KC +   AR +F++    +
Sbjct: 292 VIRACATAGLLQLGKQVHA-YVLRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKD 351

Query: 66  IFSFNALIAAYAKESFVEVARELFDKMSQPDPISYNTLIAAYAQRGDVQSAFQLFVEMRE 125
           + S+NAL++ Y     +  A+ +F +M + + +S+  +I+  A+ G  +   +LF  M+ 
Sbjct: 352 LVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKR 411

Query: 126 ALLDMDGFTLSGIITACGDDVALI--RQLHALSVAAGFDCYASVGNALITYYSKNGFLNE 185
              +   +  SG I +C    A    +Q HA  +  GFD   S GNALIT Y+K G + E
Sbjct: 412 EGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEE 471

Query: 186 AQRIFYGMGEDKDEVSWNSMVVAYMQHREGSKALGLYMEMTLRGLVVD--ILVCVISACA 245
           A+++F  M    D VSWN+++ A  QH  G++A+ +Y EM  +G+  D   L+ V++AC+
Sbjct: 472 ARQVFRTM-PCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACS 531

Query: 246 NMSSPSQGRQ 252
           +     QGR+
Sbjct: 532 HAGLVDQGRK 539

[Close]
BLAST of Cp4.1LG01g09150 vs. NCBI nr
Match: gi|659082889|ref|XP_008442084.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Cucumis melo])

HSP 1 Score: 380.6 bits (976), Expect = 2.2e-102
Identity = 192/251 (76.49%), Postives = 214/251 (85.26%), Query Frame = 1 

Query: 3   FRHVLKTCIAQRDLRTGKFLHALYIKSFVPASTYISNHFILLYSKCRRLSAARRVFDQTQ 62
           FR +LKTCIAQRDLRTGK LHALYIKSFVP STY+SNHF+LLYSKCRRLSAARRVFD T 
Sbjct: 11  FRKILKTCIAQRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTH 70

Query: 63  ECNIFSFNALIAAYAKESFVEVARELFDKMSQPDPISYNTLIAAYAQRGDVQSAFQLFVE 122
           +CN+FSFN LI+AYAKES+VEVAR+LFD+M QPD +SYNTLIAAYAQ GD Q AFQLF+E
Sbjct: 71  DCNVFSFNTLISAYAKESYVEVARKLFDEMPQPDSVSYNTLIAAYAQLGDTQPAFQLFLE 130

Query: 123 MREALLDMDGFTLSGIITACGDDVALIRQLHALSVAAGFDCYASVGNALITYYSKNGFLN 182
           MREA LDMDGFTLSGIITACG +VALI QLHALSV  G D Y SVGN LIT YSKNGFL 
Sbjct: 131 MREAFLDMDGFTLSGIITACGVNVALITQLHALSVVTGLDSYVSVGNTLITCYSKNGFLK 190

Query: 183 EAQRIFYGMGEDKDEVSWNSMVVAYMQHREGSKALGLYMEMTLRGLVVDI--LVCVISAC 242
           EA+RIF+ + ED+DEVSWNSMVVAYMQHREGSKAL LY+EMT+RGL+VDI  L  V++A 
Sbjct: 191 EARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAF 250

Query: 243 ANMSSPSQGRQ 252
            N+     G Q
Sbjct: 251 TNVQDLLGGLQ 261

[Close]
BLAST of Cp4.1LG01g09150 vs. NCBI nr
Match: gi|449457327|ref|XP_004146400.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Cucumis sativus])

HSP 1 Score: 379.4 bits (973), Expect = 4.8e-102
Identity = 191/251 (76.10%), Postives = 213/251 (84.86%), Query Frame = 1 

Query: 3   FRHVLKTCIAQRDLRTGKFLHALYIKSFVPASTYISNHFILLYSKCRRLSAARRVFDQTQ 62
           FR  LKTCIA RDLRTGK LHALYIKSFVP STY+SNHF+LLYSKCRRLSAARRVFD T 
Sbjct: 11  FRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTH 70

Query: 63  ECNIFSFNALIAAYAKESFVEVARELFDKMSQPDPISYNTLIAAYAQRGDVQSAFQLFVE 122
           +CN+FSFN LI+AYAKES+VEVA +LFD+M QPD +SYNTLIAAYA+RGD Q AFQLF+E
Sbjct: 71  DCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLE 130

Query: 123 MREALLDMDGFTLSGIITACGDDVALIRQLHALSVAAGFDCYASVGNALITYYSKNGFLN 182
           MREA LDMDGFTLSGIITACG +V LIRQLHALSV  G D Y SVGNALIT YSKNGFL 
Sbjct: 131 MREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLK 190

Query: 183 EAQRIFYGMGEDKDEVSWNSMVVAYMQHREGSKALGLYMEMTLRGLVVDI--LVCVISAC 242
           EA+RIF+ + ED+DEVSWNSMVVAYMQHREGSKAL LY+EMT+RGL+VDI  L  V++A 
Sbjct: 191 EARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAF 250

Query: 243 ANMSSPSQGRQ 252
            N+     G Q
Sbjct: 251 TNVQDLLGGLQ 261

[Close]
BLAST of Cp4.1LG01g09150 vs. NCBI nr
Match: gi|645219791|ref|XP_008237400.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Prunus mume])

HSP 1 Score: 323.2 bits (827), Expect = 4.1e-85
Identity = 157/239 (65.69%), Postives = 190/239 (79.50%), Query Frame = 1 

Query: 3   FRHVLKTCIAQRDLRTGKFLHALYIKSFVPASTYISNHFILLYSKCRRLSAARRVFDQTQ 62
           FRH+LKTCIA+RDL TGK LHALY KS +P STY+SNHFILLYSKC RLS+AR  FDQTQ
Sbjct: 11  FRHLLKTCIAERDLFTGKALHALYFKSLLPPSTYLSNHFILLYSKCGRLSSARNAFDQTQ 70

Query: 63  ECNIFSFNALIAAYAKESFVEVARELFDKMSQPDPISYNTLIAAYAQRGDVQSAFQLFVE 122
           E N+FSFNA++AAYAKES   +A ++FDK+  PD +SYNTLI+AYA RG+ + A  LF  
Sbjct: 71  EPNVFSFNAIVAAYAKESHTHIAHQMFDKIPHPDLVSYNTLISAYADRGETEPALSLFTG 130

Query: 123 MREALLDMDGFTLSGIITACGDDVALIRQLHALSVAAGFDCYASVGNALITYYSKNGFLN 182
           MR   LDMDGFT+S +IT C DD+ LIRQLH+++V+ GFD Y SV NAL+TYYSKNGFL 
Sbjct: 131 MRNMGLDMDGFTISAVITGCCDDIGLIRQLHSVAVSGGFDSYISVNNALVTYYSKNGFLE 190

Query: 183 EAQRIFYGMGEDKDEVSWNSMVVAYMQHREGSKALGLYMEMTLRGLVVDI--LVCVISA 240
           EA+R+FY MGE +DEVSWNSM+VAY QHR+G KAL L+ EM  RG  VD+  L  V++A
Sbjct: 191 EAKRVFYVMGEVRDEVSWNSMIVAYGQHRQGLKALALFQEMVRRGFKVDMFTLASVLTA 249

[Close]
BLAST of Cp4.1LG01g09150 vs. NCBI nr
Match: gi|595841122|ref|XP_007208151.1| (hypothetical protein PRUPE_ppa022107mg [Prunus persica])

HSP 1 Score: 321.6 bits (823), Expect = 1.2e-84
Identity = 156/239 (65.27%), Postives = 190/239 (79.50%), Query Frame = 1 

Query: 3   FRHVLKTCIAQRDLRTGKFLHALYIKSFVPASTYISNHFILLYSKCRRLSAARRVFDQTQ 62
           FRH+LKTCIA+RDL TGK LHALY KS +P STY+SNHFILLYSKC RLS+AR  FDQTQ
Sbjct: 11  FRHLLKTCIAERDLFTGKSLHALYFKSLLPPSTYLSNHFILLYSKCGRLSSARNAFDQTQ 70

Query: 63  ECNIFSFNALIAAYAKESFVEVARELFDKMSQPDPISYNTLIAAYAQRGDVQSAFQLFVE 122
           E N+FSFNA++AAYAKES   +A ++FDK+  PD +SYNTLI+AYA RG+ + A  LF  
Sbjct: 71  EPNVFSFNAIVAAYAKESHTHIAHQMFDKIPHPDLVSYNTLISAYADRGETEPALSLFTG 130

Query: 123 MREALLDMDGFTLSGIITACGDDVALIRQLHALSVAAGFDCYASVGNALITYYSKNGFLN 182
           MR   LDMDGFT+S +IT C DD+ LIRQLH+++V+ GFD Y SV NAL+TYYSKNGFL 
Sbjct: 131 MRNMGLDMDGFTISAVITGCCDDIGLIRQLHSVAVSGGFDSYVSVNNALVTYYSKNGFLG 190

Query: 183 EAQRIFYGMGEDKDEVSWNSMVVAYMQHREGSKALGLYMEMTLRGLVVDI--LVCVISA 240
           EA+R+FY MGE +DEVSWNSM+VAY QHR+G +AL L+ EM   GL VD+  L  V++A
Sbjct: 191 EAKRVFYVMGEMRDEVSWNSMIVAYGQHRQGLRALALFQEMVRMGLKVDMFTLASVLTA 249

[Close]
BLAST of Cp4.1LG01g09150 vs. NCBI nr
Match: gi|694369060|ref|XP_009362618.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Pyrus x bretschneideri])

HSP 1 Score: 317.0 bits (811), Expect = 2.9e-83
Identity = 156/239 (65.27%), Postives = 187/239 (78.24%), Query Frame = 1 

Query: 3   FRHVLKTCIAQRDLRTGKFLHALYIKSFVPASTYISNHFILLYSKCRRLSAARRVFDQTQ 62
           FRH+LKTCIA RDL TGK LHALY+KS +P STY+SNHFILLYSKC RLSAAR  FD TQ
Sbjct: 11  FRHLLKTCIADRDLFTGKALHALYVKSLLPPSTYLSNHFILLYSKCGRLSAARSAFDHTQ 70

Query: 63  ECNIFSFNALIAAYAKESFVEVARELFDKMSQPDPISYNTLIAAYAQRGDVQSAFQLFVE 122
           + N+FSFNA+I AYAKES   +A  LFDK+  PD +SYNTLI+AYA RG+ + A  LF  
Sbjct: 71  DPNVFSFNAIINAYAKESHTHIAHHLFDKIPLPDLVSYNTLISAYADRGETEPALSLFAG 130

Query: 123 MREALLDMDGFTLSGIITACGDDVALIRQLHALSVAAGFDCYASVGNALITYYSKNGFLN 182
           MR   LDMDGFT+S +IT+CGDDV L+RQLH + V+ GFD Y SV N+L+TYYSKNGFL 
Sbjct: 131 MRRMGLDMDGFTISAVITSCGDDVGLLRQLHCVVVSGGFDSYVSVNNSLVTYYSKNGFLE 190

Query: 183 EAQRIFYGMGEDKDEVSWNSMVVAYMQHREGSKALGLYMEMTLRGLVVDI--LVCVISA 240
           EA+++F  MGE +DEVSWNSM+VAY QHR+G KALGL+ EM  RG  VD+  L  V++A
Sbjct: 191 EAKQVFLVMGEVRDEVSWNSMIVAYGQHRQGLKALGLFQEMVRRGFNVDMFTLASVLTA 249

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g09150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP274_ARATH3.3e-7455.38Pentatricopeptide repeat-containing protein At3g49710 OS=Arabidopsis thaliana GN... [more]
PP256_ARATH4.9e-3031.45Pentatricopeptide repeat-containing protein At3g26540 OS=Arabidopsis thaliana GN... [more]
PP308_ARATH8.4e-3033.46Pentatricopeptide repeat-containing protein At4g14050, mitochondrial OS=Arabidop... [more]
PP151_ARATH9.3e-2930.71Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN... [more]
PPR57_ARATH1.2e-2831.60Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN... [more]
BLAST of Cp4.1LG01g09150 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2J0_CUCSA3.4e-10276.10Uncharacterized protein OS=Cucumis sativus GN=Csa_4G508540 PE=4 SV=1[more]
M5WRA0_PRUPE8.3e-8565.27Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022107mg PE=4 SV=1[more]
F6HJT7_VITVI1.7e-8263.10Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0771g00010 PE=4 SV=... [more]
A0A058ZT24_EUCGR1.7e-8262.55Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L01988 PE=4 SV=1[more]
A5BL66_VITVI1.1e-8162.70Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037837 PE=4 SV=1[more]
BLAST of Cp4.1LG01g09150 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G49710.11.8e-7555.38 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G26540.12.8e-3131.45 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT4G14050.14.7e-3133.46 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT2G13600.15.2e-3030.71 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G25360.16.9e-3031.60 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Cp4.1LG01g09150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659082889|ref|XP_008442084.1|2.2e-10276.49PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Cucumis melo][more]
gi|449457327|ref|XP_004146400.1|4.8e-10276.10PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Cucumis sativu... [more]
gi|645219791|ref|XP_008237400.1|4.1e-8565.69PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Prunus mume][more]
gi|595841122|ref|XP_007208151.1|1.2e-8465.27hypothetical protein PRUPE_ppa022107mg [Prunus persica][more]
gi|694369060|ref|XP_009362618.1|2.9e-8365.27PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Pyrus x bretsc... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g09150.1Cp4.1LG01g09150.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 169..193
score: 0.011coord: 67..93
score: 2.7E-5coord: 198..228
score: 1.
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 95..142
score: 1.5
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 67..93
score: 4.9E-5coord: 198..231
score: 4.0E-5coord: 98..125
score: 2.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 164..194
score: 6.27coord: 65..95
score: 9.076coord: 196..230
score: 9.69coord: 34..64
score: 5.886coord: 96..126
score: 10
IPR011990Tetratricopeptide-like helical domainGENE3DG3DSA:1.25.40.10coord: 193..220
score: 1.4E-4coord: 45..126
score: 1.
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 5..35
score: 4.3E-142coord: 52..251
score: 4.3E
NoneNo IPR availablePANTHERPTHR24015:SF720SUBFAMILY NOT NAMEDcoord: 5..35
score: 4.3E-142coord: 52..251
score: 4.3E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g09150CmaCh04G008450Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g09150CmoCh04G009050Cucurbita moschata (Rifu)cmocpeB673
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g09150Melon (DHL92) v3.6.1cpemedB509
Cp4.1LG01g09150Silver-seed gourdcarcpeB0562
Cp4.1LG01g09150Silver-seed gourdcarcpeB1302
Cp4.1LG01g09150Silver-seed gourdcarcpeB1417
Cp4.1LG01g09150Cucumber (Chinese Long) v3cpecucB0491
Cp4.1LG01g09150Wax gourdcpewgoB0478
Cp4.1LG01g09150Wax gourdcpewgoB0486
Cp4.1LG01g09150Cucurbita pepo (Zucchini)cpecpeB073
Cp4.1LG01g09150Cucurbita pepo (Zucchini)cpecpeB233
Cp4.1LG01g09150Cucurbita pepo (Zucchini)cpecpeB385
Cp4.1LG01g09150Cucumber (Gy14) v1cgycpeB0219
Cp4.1LG01g09150Cucurbita maxima (Rimu)cmacpeB350
Cp4.1LG01g09150Cucurbita maxima (Rimu)cmacpeB876
Cp4.1LG01g09150Cucurbita moschata (Rifu)cmocpeB312
Cp4.1LG01g09150Cucurbita moschata (Rifu)cmocpeB613
Cp4.1LG01g09150Cucurbita moschata (Rifu)cmocpeB813
Cp4.1LG01g09150Bottle gourd (USVL1VR-Ls)cpelsiB326
Cp4.1LG01g09150Bottle gourd (USVL1VR-Ls)cpelsiB370
Cp4.1LG01g09150Watermelon (Charleston Gray)cpewcgB349
Cp4.1LG01g09150Watermelon (Charleston Gray)cpewcgB374
Cp4.1LG01g09150Melon (DHL92) v3.5.1cpemeB434
Cp4.1LG01g09150Cucumber (Gy14) v2cgybcpeB369
Cp4.1LG01g09150Cucumber (Gy14) v2cgybcpeB808