Cp4.1LG01g09010 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g09010
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description40S ribosomal protein S4
LocationCp4.1LG01 : 4442438 .. 4445720 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACGCACGGGCATTTTGGTAAATTGCGTAAAAACCCTAAGCCCTTCTCTTATTTAAAGTGAAACCGACGTAACCCCAATTCTCTTCCCCAAGGAGTTTCAGAGGCGGCAGCAAACTCACTCGGCCTTCTACAAAGGCGACCTTCCTTGTTTCGAAACCATGGTAAGGAGATGTTTCTATGAACCTTCTTCCTCCTAATTTGCATTTGATATTTGTTAATCCGGGTTGATAAACTTCAATGCAGTTTTCTCTCTGTTCTCGTTTGGTTTTTTTTTTTCCGATCATTGTTGAATTGTAGCCTGTTGTATCAGTATTAGGTATGCTGTTATAAGTTCGTCTTGAATCTGCCTTTCTTATCTCGAGATCTGAAAATGCGCTTCTTATTTTGTTTTGGAGATCATTTATTGGGCACTGACATATGAGATTCATGGTTGGGTGGTTTATGTACATTTCGGCGTCCTGTGTTTGTGGTTGGTCTATCTGGTTGAGTTGAATCCGTGTAAGTTATATATTGTTTGTATGTTTCTGGTGCCTGCATATATTCTTAGGGCATTCATGTTTTTGTAAGCGATACCTTTTGTAAACTTTGAACTGCAAAATAAGAACAACAAAGTACGTTTAGTTATTCAGTAATGCACTAGCTGTACATCCCAACTAGTTTGCATGTTCGTTTAGTTCTACATTCCAACTAGTTTACACCTCAACTAATTTTGTAATGTTGTTAACATGAATTTAAAGATTTTATGGCTCGAGATTTTATGCAAGATGTTTATCAGAGTTACTATGTTCCTTGCTCTTTGTTTTGGCTTCATGCTATCTGTATCTATGTGTCCTTTCTTCTGTCTAGCATTTTGGTGTTAGGACTTGGGAATATATAATATTACCTTTGGAATTAATGGCTATTTCTACCACAGGCAAGGGGATTGAAGAAGCATTTGAAGAGGCTCAATGCTCCGAAGCATTGGATGCTTGACAAACTTGGTGGTGCATTTGTGAGTCAAAATTATAGTTCAAGTTCAGTTTACATCTTGCTATTGTTCAACATGTTACCTATTTTTGACATTTATCGGATCTTTTTGTAGGCCCCCAAACCTTCCTCTGGACCTCATAAATCAAGGGAATGCCTCCCATTGATTCTTATCCTACGAAACCGATTGAAGTATGCTCTCACTTATCGTGAGGTGATTTCAATCTTAATGCAAAGACATGTTCTTGTTGATGGGAAAGTGAGAACTGATAAGACATACCCAGCTGGGTTTATGGGTATTCTGCTTACCTTTTATCTTCTTAATTTAATTCTAATCTTAATAATTGAATGAAAGTGCCATTCTTCGTTGCATAATTTTAGGCATCACTTGTCTTGACAAACTTAAACAAGTCATTATCGATCTGTCGATGAATGAGACTAGGATGATGTATTATTAACGGAGATCATGTTTGAAGTGAATGGGGCAAGTGGCCATGAACTGCGGTCTGGTTCAGGAATGCTTCCATTTCCTAGCTTGACCACATTTTGTAATATTTTAGCCTTATTGTTAGTTTCATCTCGTGAATTACTATAAATTGTTACATTTTTTATGGAATTGATTCTTTAAAATATTGAATAGTTGGTACTGCCTTTATTAAATTTTATTATTTGATTAGATTAGCCCCCATTATTATAAATAAACATACCAAACTGTTTTTACTATAGATATTAGAATGTGGATGTGAATAACATTATGTCTAGATAACATACGATGTGCATTCTAATTTTGTGTTGCCAATTCTGAAGAAGATAGTCAGTAATATATTGATCTGATTATACGATCTTATGGTGTGATTGTCACCTAGACAAAGTGTTTTTTTTTCTTGGTGTGTAATGTTTGTTTTATATGATTATTATTCTGTCCATGCTAAAGTTGAATTTTCTTTTTTTCCTTGTGATGCCTTCTTGGTAGATGTTGTATCAATTCCCAAAACAAATGAGAATTTCCGGCTCCTCTATGACACCAAAGGTCGATTCCGTCTTCACTCTGTGAGGGATGAGGAGGCAAAGGTTAGTTACCTATATATTTGATATCAAACTTTATCTTCTATTTTTTTGTTTGTTAAACATGACTTCTCGGGATCAGAAAACAAGTAAATCACATCATGTGTAGCTGTCACAAATCTGTGAATAAGCTTTAGAACTTCTCCGCTTCGATTGTCATTTCCTGTCAAAAAAAAAAGAAGCATTCCGTCTTTTCCTGCTTACCTGTTCTAGGTAGTTGCATTTTTCTTTTAACTCCTGGGGTTTTAGGAAGGAAAATGGATTTCCTCTTCAACGACTTACAGACATTATTGTCATTGGTCTATGAAAATATTGGATTGTTCACATTGATTTTCATGTTTCTTTATGCAGTACAAACTCTGCAAAGTCCGTTCTGTGCAGTTCGGGCAGAAGGGCATTCCATATCTTAACACATATGATGGTCGTACCATTCGGTACCCTGATCCTCTCATCAAGGCCAATGACACCATCAAGCTCGACCTTGAGACCAACAAGATCGCTGATTTCATCAAGTTTGATGTGGGTAATGTTGTGATGGTTACTGGTGGAAGAAATCGTGGAAGAGTTGGAGTAATTAAGAACAGGGAGAAGCATAAGGGAAGTTTTGAGACCATCCACGTCCAGGATGCCACCGGCCACGAATTTGCCACTCGTCTTTGCAATGTCTTTACCGTCGGTAAGGGTACTAAGCCATGGCTATCCCTACCTAAGGGCAAGGGTATTAAGTTATCCATCATCGAAGAGGCTAGGAAGAGGCTTGCAAGCCAGGCGGCAGTTACAGCTTAGGAGTCTTTAATGAAAAGGTTGGAAGAAGACATTGTTTATGGTTATTGATTTTAGATTGTTCTGACGAGTCTGTTCTTTGAATTTGTGTTTCAAATTTTGTTTTAGTAAGTTTTTCCCAACCGCTGTTTCGTTATTTTCATTTTAATTTTAGCGTGGCTGCTACAATTAGTCATTCTAAAAGTTTCATGTTAATGTTTGCAATCTAAATGAGAGTTTAAAAATTAAGTCAATTGTCAAAATGTCAATGTAGGAACATTTGTCATGTTCTATTTTGTTACGTGTATTTAAATGATAGGAAGTTTTCTTGGTTGTTCGAAGTTATTTATGCGTCGAGTTTTCTGTTTAAACTAATGAGTATGAAATTTGGTTTTGTTACCATAAGATGGGACAATGGTATAAAAATCTTTCGTTTAGGAACATTAACGTGTATCATCTCACATTTGATTATTGATGTGTTGTAATTAAG

mRNA sequence

CACGCACGGGCATTTTGGTAAATTGCGTAAAAACCCTAAGCCCTTCTCTTATTTAAAGTGAAACCGACGTAACCCCAATTCTCTTCCCCAAGGAGTTTCAGAGGCGGCAGCAAACTCACTCGGCCTTCTACAAAGGCGACCTTCCTTGTTTCGAAACCATGGCAAGGGGATTGAAGAAGCATTTGAAGAGGCTCAATGCTCCGAAGCATTGGATGCTTGACAAACTTGGTGGTGCATTTGCCCCCAAACCTTCCTCTGGACCTCATAAATCAAGGGAATGCCTCCCATTGATTCTTATCCTACGAAACCGATTGAAGTATGCTCTCACTTATCGTGAGGTGATTTCAATCTTAATGCAAAGACATGTTCTTGTTGATGGGAAAGTGAGAACTGATAAGACATACCCAGCTGGGTTTATGGATGTTGTATCAATTCCCAAAACAAATGAGAATTTCCGGCTCCTCTATGACACCAAAGGTCGATTCCGTCTTCACTCTGTGAGGGATGAGGAGGCAAAGTACAAACTCTGCAAAGTCCGTTCTGTGCAGTTCGGGCAGAAGGGCATTCCATATCTTAACACATATGATGGTCGTACCATTCGGTACCCTGATCCTCTCATCAAGGCCAATGACACCATCAAGCTCGACCTTGAGACCAACAAGATCGCTGATTTCATCAAGTTTGATGTGGGTAATGTTGTGATGGTTACTGGTGGAAGAAATCGTGGAAGAGTTGGAGTAATTAAGAACAGGGAGAAGCATAAGGGAAGTTTTGAGACCATCCACGTCCAGGATGCCACCGGCCACGAATTTGCCACTCGTCTTTGCAATGTCTTTACCGTCGGTAAGGGTACTAAGCCATGGCTATCCCTACCTAAGGGCAAGGGTATTAAGTTATCCATCATCGAAGAGGCTAGGAAGAGGCTTGCAAGCCAGGCGGCAGTTACAGCTTAGGAGTCTTTAATGAAAAGGTTGGAAGAAGACATTGTTTATGGTTATTGATTTTAGATTGTTCTGACGAGTCTGTTCTTTGAATTTGTGTTTCAAATTTTGTTTTAGTAAGTTTTTCCCAACCGCTGTTTCGTTATTTTCATTTTAATTTTAGCGTGGCTGCTACAATTAGTCATTCTAAAAGTTTCATGTTAATGTTTGCAATCTAAATGAGAGTTTAAAAATTAAGTCAATTGTCAAAATGTCAATGTAGGAACATTTGTCATGTTCTATTTTGTTACGTGTATTTAAATGATAGGAAGTTTTCTTGGTTGTTCGAAGTTATTTATGCGTCGAGTTTTCTGTTTAAACTAATGAGTATGAAATTTGGTTTTGTTACCATAAGATGGGACAATGGTATAAAAATCTTTCGTTTAGGAACATTAACGTGTATCATCTCACATTTGATTATTGATGTGTTGTAATTAAG

Coding sequence (CDS)

ATGGCAAGGGGATTGAAGAAGCATTTGAAGAGGCTCAATGCTCCGAAGCATTGGATGCTTGACAAACTTGGTGGTGCATTTGCCCCCAAACCTTCCTCTGGACCTCATAAATCAAGGGAATGCCTCCCATTGATTCTTATCCTACGAAACCGATTGAAGTATGCTCTCACTTATCGTGAGGTGATTTCAATCTTAATGCAAAGACATGTTCTTGTTGATGGGAAAGTGAGAACTGATAAGACATACCCAGCTGGGTTTATGGATGTTGTATCAATTCCCAAAACAAATGAGAATTTCCGGCTCCTCTATGACACCAAAGGTCGATTCCGTCTTCACTCTGTGAGGGATGAGGAGGCAAAGTACAAACTCTGCAAAGTCCGTTCTGTGCAGTTCGGGCAGAAGGGCATTCCATATCTTAACACATATGATGGTCGTACCATTCGGTACCCTGATCCTCTCATCAAGGCCAATGACACCATCAAGCTCGACCTTGAGACCAACAAGATCGCTGATTTCATCAAGTTTGATGTGGGTAATGTTGTGATGGTTACTGGTGGAAGAAATCGTGGAAGAGTTGGAGTAATTAAGAACAGGGAGAAGCATAAGGGAAGTTTTGAGACCATCCACGTCCAGGATGCCACCGGCCACGAATTTGCCACTCGTCTTTGCAATGTCTTTACCGTCGGTAAGGGTACTAAGCCATGGCTATCCCTACCTAAGGGCAAGGGTATTAAGTTATCCATCATCGAAGAGGCTAGGAAGAGGCTTGCAAGCCAGGCGGCAGTTACAGCTTAG

Protein sequence

MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKYKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPKGKGIKLSIIEEARKRLASQAAVTA
Homology
[Close]
BLAST of Cp4.1LG01g09010 vs. Swiss-Prot
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2)

HSP 1 Score: 504.6 bits (1298), Expect = 6.6e-142
Identity = 241/261 (92.34%), Postives = 255/261 (97.70%), Query Frame = 1 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           +KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDLE NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NV+T+GKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
           GKGIKL+IIEEARKRLASQ A
Sbjct: 241 GKGIKLTIIEEARKRLASQQA 261

[Close]
BLAST of Cp4.1LG01g09010 vs. Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4)

HSP 1 Score: 504.2 bits (1297), Expect = 8.6e-142
Identity = 241/261 (92.34%), Postives = 255/261 (97.70%), Query Frame = 1 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           +KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDLE NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NV+T+GKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
           GKGIKL+IIEEARKRLASQ A
Sbjct: 241 GKGIKLTIIEEARKRLASQQA 261

[Close]
BLAST of Cp4.1LG01g09010 vs. Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 502.7 bits (1293), Expect = 2.5e-141
Identity = 241/264 (91.29%), Postives = 258/264 (97.73%), Query Frame = 1 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL++I+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQR V+VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS+RDEE+K
Sbjct: 61  VISILMQRQVMVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEESK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLE+NKI DFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFET+H+QD+ GHEFATRL NVFT+GKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKL+IIE+ARKRLA+Q+A  A
Sbjct: 241 GKGIKLTIIEDARKRLAAQSATPA 264

[Close]
BLAST of Cp4.1LG01g09010 vs. Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1)

HSP 1 Score: 501.9 bits (1291), Expect = 4.3e-141
Identity = 239/261 (91.57%), Postives = 255/261 (97.70%), Query Frame = 1 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           +KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDLE NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NV+T+GKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
           GKGIKL+IIEEARKRL++Q A
Sbjct: 241 GKGIKLTIIEEARKRLSAQQA 261

[Close]
BLAST of Cp4.1LG01g09010 vs. Swiss-Prot
Match: RS4_MAIZE (40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1)

HSP 1 Score: 495.7 bits (1275), Expect = 3.1e-139
Identity = 240/265 (90.57%), Postives = 254/265 (95.85%), Query Frame = 1 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRHVLVDGKVRTDKTYPAGFMDV+SIPKTNEN+RLLYDTKGRFRLH +RDE+AK
Sbjct: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTNENYRLLYDTKGRFRLHPIRDEDAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIK+DLETNKI DFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRN GRVGVIKNREKHKGSFETIHV+D+ GH+FATR+ NVFT+GKG KPW+SLPK
Sbjct: 181 VMVTGGRNTGRVGVIKNREKHKGSFETIHVEDSLGHQFATRMGNVFTIGKGNKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKR-LASQAAVTA 265
           GKGIKLSIIEE RKR  A+QAA  A
Sbjct: 241 GKGIKLSIIEEQRKRDAAAQAAANA 265

[Close]
BLAST of Cp4.1LG01g09010 vs. TrEMBL
Match: A0A0A0K4K7_CUCSA (40S ribosomal protein S4 OS=Cucumis sativus GN=Csa_7G282410 PE=3 SV=1)

HSP 1 Score: 523.1 bits (1346), Expect = 2.0e-145
Identity = 257/264 (97.35%), Postives = 263/264 (99.62%), Query Frame = 1 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRHVLVDGKVRTDKT+PAGFMDVVSIPKT+ENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLE+NKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QDATGHEFATRL NVFTVGKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKLSIIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]
BLAST of Cp4.1LG01g09010 vs. TrEMBL
Match: A0A0A0K3Y8_CUCSA (40S ribosomal protein S4 OS=Cucumis sativus GN=Csa_7G281390 PE=3 SV=1)

HSP 1 Score: 520.8 bits (1340), Expect = 9.9e-145
Identity = 255/264 (96.59%), Postives = 261/264 (98.86%), Query Frame = 1 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRHVLVDGKVRTDKT+PAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLE+NKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKH GSFETIH+QDATGHEFATRL NVFT+GKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHTGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKLSIIEEARKRLASQA VTA
Sbjct: 241 GKGIKLSIIEEARKRLASQATVTA 264

[Close]
BLAST of Cp4.1LG01g09010 vs. TrEMBL
Match: A0A0A0KQK7_CUCSA (40S ribosomal protein S4 OS=Cucumis sativus GN=Csa_5G212590 PE=3 SV=1)

HSP 1 Score: 517.7 bits (1332), Expect = 8.3e-144
Identity = 252/264 (95.45%), Postives = 262/264 (99.24%), Query Frame = 1 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRHVLVD KVRTDKTYPAGFMDVVSIPKT+ENFRLLYDTKGRFRLHS+RDEEAK
Sbjct: 61  VIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSIRDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLE+NKIADFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QDATGHEFATRL NVFT+GKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKL+IIEEARKRLASQ+AVTA
Sbjct: 241 GKGIKLTIIEEARKRLASQSAVTA 264

[Close]
BLAST of Cp4.1LG01g09010 vs. TrEMBL
Match: A0A0R4J581_SOYBN (40S ribosomal protein S4 OS=Glycine max GN=GLYMA_14G056900 PE=3 SV=1)

HSP 1 Score: 513.8 bits (1322), Expect = 1.2e-142
Identity = 248/264 (93.94%), Postives = 259/264 (98.11%), Query Frame = 1 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS+RD+EAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDDEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLI+ANDT+KLDLE NKI DFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIRANDTVKLDLEENKIVDFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATR+ NVFT+GKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFTIGKGTKPWISLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKLSIIEEARKR+A+Q A TA
Sbjct: 241 GKGIKLSIIEEARKRIAAQQATTA 264

[Close]
BLAST of Cp4.1LG01g09010 vs. TrEMBL
Match: A0A0B2P1R0_GLYSO (40S ribosomal protein S4 OS=Glycine soja GN=glysoja_039313 PE=3 SV=1)

HSP 1 Score: 512.7 bits (1319), Expect = 2.7e-142
Identity = 249/264 (94.32%), Postives = 258/264 (97.73%), Query Frame = 1 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRD+EAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLI+ANDTIKLDLE NKI DFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLEENKIVDFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATR+ NVFT+GKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFTIGKGTKPWISLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKLSIIEEARKR+A+Q A  A
Sbjct: 241 GKGIKLSIIEEARKRIAAQQATAA 264

[Close]
BLAST of Cp4.1LG01g09010 vs. TAIR10
Match: AT5G58420.1 (AT5G58420.1 Ribosomal protein S4 (RPS4A) family protein)

HSP 1 Score: 504.6 bits (1298), Expect = 3.7e-143
Identity = 241/261 (92.34%), Postives = 255/261 (97.70%), Query Frame = 1 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           +KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDLE NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NV+T+GKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
           GKGIKL+IIEEARKRLASQ A
Sbjct: 241 GKGIKLTIIEEARKRLASQQA 261

[Close]
BLAST of Cp4.1LG01g09010 vs. TAIR10
Match: AT5G07090.1 (AT5G07090.1 Ribosomal protein S4 (RPS4A) family protein)

HSP 1 Score: 504.2 bits (1297), Expect = 4.8e-143
Identity = 241/261 (92.34%), Postives = 255/261 (97.70%), Query Frame = 1 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           +KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDLE NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NV+T+GKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
           GKGIKL+IIEEARKRLASQ A
Sbjct: 241 GKGIKLTIIEEARKRLASQQA 261

[Close]
BLAST of Cp4.1LG01g09010 vs. TAIR10
Match: AT2G17360.1 (AT2G17360.1 Ribosomal protein S4 (RPS4A) family protein)

HSP 1 Score: 501.9 bits (1291), Expect = 2.4e-142
Identity = 239/261 (91.57%), Postives = 255/261 (97.70%), Query Frame = 1 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VISILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAK
Sbjct: 61  VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           +KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDLE NKI +FIKFDVGNV
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NV+T+GKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAA 262
           GKGIKL+IIEEARKRL++Q A
Sbjct: 241 GKGIKLTIIEEARKRLSAQQA 261

[Close]
BLAST of Cp4.1LG01g09010 vs. NCBI nr
Match: gi|449465362|ref|XP_004150397.1| (PREDICTED: 40S ribosomal protein S4-3 [Cucumis sativus])

HSP 1 Score: 523.1 bits (1346), Expect = 2.9e-145
Identity = 257/264 (97.35%), Postives = 263/264 (99.62%), Query Frame = 1 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRHVLVDGKVRTDKT+PAGFMDVVSIPKT+ENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLE+NKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QDATGHEFATRL NVFTVGKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKLSIIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]
BLAST of Cp4.1LG01g09010 vs. NCBI nr
Match: gi|659123052|ref|XP_008461463.1| (PREDICTED: 40S ribosomal protein S4-3-like [Cucumis melo])

HSP 1 Score: 521.5 bits (1342), Expect = 8.3e-145
Identity = 255/264 (96.59%), Postives = 263/264 (99.62%), Query Frame = 1 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRHVLVDGKVRTDKT+PAGFMDVVSIPKT+ENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLE+NKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QDATGHEFATRL NVFT+GKGTKPW+S+PK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSVPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKLSIIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]
BLAST of Cp4.1LG01g09010 vs. NCBI nr
Match: gi|659123125|ref|XP_008461503.1| (PREDICTED: 40S ribosomal protein S4-3-like [Cucumis melo])

HSP 1 Score: 521.5 bits (1342), Expect = 8.3e-145
Identity = 254/264 (96.21%), Postives = 263/264 (99.62%), Query Frame = 1 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRHVLVDGKVRTDKT+PAGFMD++SIPKTNENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDILSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           YKLCKVRSVQFGQKGIPYLNT+DGRTIRYPDPLIKANDTIKLDLE+NKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTFDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QDATGHEFATRL NVFT+GKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKLSIIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLSIIEEARKRLASQAAVTA 264

[Close]
BLAST of Cp4.1LG01g09010 vs. NCBI nr
Match: gi|778726350|ref|XP_004150395.2| (PREDICTED: 40S ribosomal protein S4-3-like [Cucumis sativus])

HSP 1 Score: 520.8 bits (1340), Expect = 1.4e-144
Identity = 255/264 (96.59%), Postives = 261/264 (98.86%), Query Frame = 1 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRHVLVDGKVRTDKT+PAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK
Sbjct: 61  VIAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLE+NKIADFIKFDVGNV
Sbjct: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKH GSFETIH+QDATGHEFATRL NVFT+GKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHTGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKLSIIEEARKRLASQA VTA
Sbjct: 241 GKGIKLSIIEEARKRLASQATVTA 264

[Close]
BLAST of Cp4.1LG01g09010 vs. NCBI nr
Match: gi|659109681|ref|XP_008454823.1| (PREDICTED: 40S ribosomal protein S4-3 [Cucumis melo])

HSP 1 Score: 518.8 bits (1335), Expect = 5.4e-144
Identity = 253/264 (95.83%), Postives = 262/264 (99.24%), Query Frame = 1 

Query: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60
           MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE 60

Query: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK 120
           VI+ILMQRHVLVD KVRTDKTYPAGFMDVVSIPKT+ENFRLLYDTKGRFRLHS+RDEEAK
Sbjct: 61  VIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSIRDEEAK 120

Query: 121 YKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKIADFIKFDVGNV 180
           +KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLE+NKIADFIKFDVGNV
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNV 180

Query: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTVGKGTKPWLSLPK 240
           VMVTGGRNRGRVGVIKNREKHKGSFETIH+QDATGHEFATRL NVFT+GKGTKPW+SLPK
Sbjct: 181 VMVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPK 240

Query: 241 GKGIKLSIIEEARKRLASQAAVTA 265
           GKGIKL+IIEEARKRLASQAAVTA
Sbjct: 241 GKGIKLTIIEEARKRLASQAAVTA 264

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g09010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS43_ARATH6.6e-14292.3440S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2[more]
RS42_ARATH8.6e-14292.3440S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4[more]
RS4_SOLTU2.5e-14191.2940S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1[more]
RS41_ARATH4.3e-14191.5740S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1[more]
RS4_MAIZE3.1e-13990.5740S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1[more]
BLAST of Cp4.1LG01g09010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K4K7_CUCSA2.0e-14597.3540S ribosomal protein S4 OS=Cucumis sativus GN=Csa_7G282410 PE=3 SV=1[more]
A0A0A0K3Y8_CUCSA9.9e-14596.5940S ribosomal protein S4 OS=Cucumis sativus GN=Csa_7G281390 PE=3 SV=1[more]
A0A0A0KQK7_CUCSA8.3e-14495.4540S ribosomal protein S4 OS=Cucumis sativus GN=Csa_5G212590 PE=3 SV=1[more]
A0A0R4J581_SOYBN1.2e-14293.9440S ribosomal protein S4 OS=Glycine max GN=GLYMA_14G056900 PE=3 SV=1[more]
A0A0B2P1R0_GLYSO2.7e-14294.3240S ribosomal protein S4 OS=Glycine soja GN=glysoja_039313 PE=3 SV=1[more]
BLAST of Cp4.1LG01g09010 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G58420.13.7e-14392.34 Ribosomal protein S4 (RPS4A) family protein[more]
AT5G07090.14.8e-14392.34 Ribosomal protein S4 (RPS4A) family protein[more]
AT2G17360.12.4e-14291.57 Ribosomal protein S4 (RPS4A) family protein[more]
BLAST of Cp4.1LG01g09010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449465362|ref|XP_004150397.1|2.9e-14597.35PREDICTED: 40S ribosomal protein S4-3 [Cucumis sativus][more]
gi|659123052|ref|XP_008461463.1|8.3e-14596.59PREDICTED: 40S ribosomal protein S4-3-like [Cucumis melo][more]
gi|659123125|ref|XP_008461503.1|8.3e-14596.21PREDICTED: 40S ribosomal protein S4-3-like [Cucumis melo][more]
gi|778726350|ref|XP_004150395.2|1.4e-14496.59PREDICTED: 40S ribosomal protein S4-3-like [Cucumis sativus][more]
gi|659109681|ref|XP_008454823.1|5.4e-14495.83PREDICTED: 40S ribosomal protein S4-3 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR018199Ribosomal_S4e_N_CS
IPR013845Ribosomal_S4e_central_region
IPR013843Ribosomal_S4e_N
IPR005824KOW
IPR002942S4_RNA-bd
IPR000876Ribosomal_S4e
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005634 nucleus
cellular_component GO:0005622 intracellular
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0005524 ATP binding
molecular_function GO:0004004 ATP-dependent RNA helicase activity
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g09010.1Cp4.1LG01g09010.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000876Ribosomal protein S4eHAMAPMF_00485Ribosomal_S4ecoord: 7..238
score: 36
IPR000876Ribosomal protein S4ePIRPIRSF002116RPS4a_RPS4ecoord: 1..241
score: 5.0
IPR000876Ribosomal protein S4ePANTHERPTHR1158130S/40S RIBOSOMAL PROTEIN S4coord: 2..264
score: 1.5E
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 47..90
score: 4.
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 42..106
score: 9.
IPR002942RNA-binding S4 domainPROFILEPS50889S4coord: 42..104
score: 9
IPR005824KOWPFAMPF00467KOWcoord: 177..210
score: 2.
IPR005824KOWSMARTSM00739kow_9coord: 174..201
score: 7.
IPR013843Ribosomal protein S4e, N-terminalPFAMPF08071RS4NTcoord: 3..39
score: 1.3
IPR013845Ribosomal protein S4e, central regionPRODOMPD002667coord: 87..176
score: 3.0
IPR013845Ribosomal protein S4e, central regionPFAMPF00900Ribosomal_S4ecoord: 95..169
score: 1.1
IPR018199Ribosomal protein S4e, N-terminal, conserved sitePROSITEPS00528RIBOSOMAL_S4Ecoord: 8..22
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g09010CmaCh04G008350Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g09010CmoCh04G008930Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g09010Carg14235Silver-seed gourdcarcpeB1302
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g09010Silver-seed gourdcarcpeB0562
Cp4.1LG01g09010Silver-seed gourdcarcpeB1417
Cp4.1LG01g09010Cucumber (Chinese Long) v3cpecucB0501
Cp4.1LG01g09010Cucumber (Chinese Long) v3cpecucB0581
Cp4.1LG01g09010Wax gourdcpewgoB0486
Cp4.1LG01g09010Cucurbita pepo (Zucchini)cpecpeB073
Cp4.1LG01g09010Cucurbita pepo (Zucchini)cpecpeB233
Cp4.1LG01g09010Cucurbita pepo (Zucchini)cpecpeB385
Cp4.1LG01g09010Cucumber (Gy14) v1cgycpeB0219
Cp4.1LG01g09010Cucurbita maxima (Rimu)cmacpeB350
Cp4.1LG01g09010Cucurbita maxima (Rimu)cmacpeB876
Cp4.1LG01g09010Cucurbita moschata (Rifu)cmocpeB312
Cp4.1LG01g09010Cucurbita moschata (Rifu)cmocpeB613
Cp4.1LG01g09010Cucurbita moschata (Rifu)cmocpeB813
Cp4.1LG01g09010Wild cucumber (PI 183967)cpecpiB401
Cp4.1LG01g09010Wild cucumber (PI 183967)cpecpiB468
Cp4.1LG01g09010Cucumber (Chinese Long) v2cpecuB404
Cp4.1LG01g09010Cucumber (Chinese Long) v2cpecuB469
Cp4.1LG01g09010Bottle gourd (USVL1VR-Ls)cpelsiB326
Cp4.1LG01g09010Watermelon (Charleston Gray)cpewcgB349
Cp4.1LG01g09010Watermelon (Charleston Gray)cpewcgB374
Cp4.1LG01g09010Watermelon (97103) v1cpewmB383
Cp4.1LG01g09010Watermelon (97103) v1cpewmB443
Cp4.1LG01g09010Melon (DHL92) v3.5.1cpemeB421
Cp4.1LG01g09010Melon (DHL92) v3.5.1cpemeB434
Cp4.1LG01g09010Cucumber (Gy14) v2cgybcpeB506
Cp4.1LG01g09010Cucumber (Gy14) v2cgybcpeB808
Cp4.1LG01g09010Melon (DHL92) v3.6.1cpemedB493
Cp4.1LG01g09010Melon (DHL92) v3.6.1cpemedB509