Cp4.1LG01g07860 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g07860
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 5257437 .. 5259943 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTATAAAAAGGAAATTATTCATCAGCAGCCAAATATTACATTATTCAAGACATTAGGAACTTGGGACAAAGCTACCTAAAGCTTTGTTAGTAACTTCATTTCTTTAATTGATATAATATATATATATATATACACACACATATTCATAGGTAAGCTCTAATGATTATGTATTCGTACGTACATAAATTACATGTTATATTAGAAGTATGGTCGAGATTATTATGCCTAATAGATCACATGGTATATATTAGAGGTTTGGTCCTAAATAATATACCTTACTTTTTCAAGTGATGTGTAACATTTTTACCTCTGGTTAGAACTATTGGAGAGGTCGACAAACTGCGTTTATCAGCAGAACCCAAAACGTCATGGACTTCCTTGCTTCTGTCATCTTTGCAAGATTTGGTTGCAGATGATGATAGTATCTGCACTGTTAAGCTTCCACCTACATATCAAAATCACCAGGACACTGAAAAAAGTCGTGCAAAGTAGAGGGGAGTATGAACACCATATCTTATAGAATAAGATGCAAAGAAATGCAGAAATATTTGTCCAGAAGAATTGTAGATGTGATGTTTTTGATGCAGTCAGCTATTCTTTTGTTCATAATCTGATACACCTTGTTGATCCTCAGCATAGGGGTAACAATATTGTTCATAATCTAATAATTTTTACCTTTCAAATAAAAATATTATTGACATCACTAAGGAATAATGTTTACCACTCATAATCAACCACAAGAAAAGCCGAAAAGTTTACTGATGTTGAAAATTTTACTTGAAAGATAAGATAGCATAGCTCCTATCACAAATTTTTAAATTTTGTAATGAAGTTTACCTAGCACCAGAGCAGCACCAATCCAGCCACTCAATCCCCACCTTTCACCAAGAAGGAACCAGGCAAAACTTCCACCCCAGACTGGCTCCAAACTGTAAATAACCGCAGTTTCTGTGGCTGATACATCGCACATGGCACCCATCTGGAGAATCGTATATTGATTTGCTAAGAAAATATTGTTTGCAGCAATTCAAGTGCATACCCATGTGCACAGATGTATCACATACATGCATTCATATACATATACATAAAAGTTCAATATTTGTATAATTTAGACAGGATCTGTAACCGTCCAAGCCCATCGCTAGTAGATATTGTTCTTTTTAGGCTTTCCGTTAAGGAATGCTTCATTTCTACACCCTCGTAAGGAATGCTTCGTTTCCCTCTCCAATCGATGTAAGATCTCACAATCCACCCCCTTGAAGGTCAGCGTCTTCGCTAGCATATGGCTCAGTGCCCCTAATCGCTAGCAAATATTTGGGCTTTTCTTTTCAAGCTTCCCCTTAAGGTTTTAAAACGCGTCTATTAGGAGAGGTTTCCACACCCTTATAAGAAATGTTTCGTTCCCCTCTCCAACTAATGTAAGATCCCACGTGAACAAATAAAATCAAATAGCATCTCAAAGGAAAAGCAAGGCTGAAATTAAAATTTTATATATAGACAAAATAAGAAGGCATACCTCTAGCCACAGGCAAAAACCAGTAGACAATAAGCCTGTGTACAGAGCAGGTACCCAAGGAAACATGAACACCCAATCTGAATACGTTTTCCAATTCCACGACTCACTAATTGTTTCTGTTCCATCAATCCATCTCCAAATAAAGTACCACAGCATCGATAGAATAGAAACAACGCAAACCTGTAAAAGTAATTAAAATCATTCAAACTATACAGCAAAACTAACACCATTGCCACCCCTCCCCAATATGAGAAAATATTAACTTCATATGCAAGGAGTGGTACTAATTTATCCTTTTCTGTACGCCTTGAAATATGCTCTGTTCTAAGCATATGCACACCAAAAAAGATTGCACTCAAGAAGTTCAAAAGATCTCCCACCTGAAATAAATCATAAGAACTAGTTGAATGTAGTGTTTACACATACATCAAAATCTCAAATTGAAAGCATTCAGAAATTTAAAAAACTGCTGATTAGATTACATTCTGCCAATAATCACAATAATTTTGAGAATAAACATACACATGGAGGGGATCCACTAGATTCAAGCATTGCAACCCCAATGACTGACATGAGAACTCCAAACCAGGTACGAGCAGGAACTACAGCACCTAAAACTCCATCAAGTATTGGAACTACAAGTACCTGATTATTGATACACAAGAACATTAACACACAATATTATAGAAAGAACATTAACACAACATATAATTCAGAATATTACCGTGAGCATTGATATAAAGGATGCTCGCCCGGCATCAGATGTAAGCAGTCCAAATGCCTGCATCAGGTACCCCAGACTAACCCAGAAACCTAACTCTATTCCAGCATTACGAGTCTCAACATCATCCCATTTATACAATACAAGTGGAACGAATGGAATAGCAGTTATGGCAAACCGCACAGCATTGAAGGTTGCTGGATCCACTAATTCTTCAACCTCTTTCACAACTGGAATACTGCTAGCTACAGCAGCAATGATTTGA

mRNA sequence

ATGAAAACTATTGGAGAGGTCGACAAACTGCGTTTATCAGCAGAACCCAAAACGTCATGGACTTCCTTGCTTCTGTCATCTTTGCAAGATTTGGTTGCAGATGATGATAGTATCTGCACTGTTAAGCTTCCACCTACATATCAAAATCACCAGGACACTGAAAAAAGTCGTGCAAATTTACCTAGCACCAGAGCAGCACCAATCCAGCCACTCAATCCCCACCTTTCACCAAGAAGGAACCAGGCAAAACTTCCACCCCAGACTGGCTCCAAACTATTACATTCTGCCAATAATCACAATAATTTTGAGAATAAACATACACATGGAGGGGATCCACTAGATTCAAGCATTGCAACCCCAATGACTGACATGAGAACTCCAAACCAGAATATTACCGTGAGCATTGATATAAAGGATGCTCGCCCGGCATCAGATGTAAGCAGTCCAAATGCCTGCATCAGGTACCCCAGACTAACCCAGAAACCTAACTCTATTCCAGCATTACGAGTCTCAACATCATCCCATTTATACAATACAAGTGGAACGAATGGAATAGCAGTTATGGCAAACCGCACAGCATTGAAGGTTGCTGGATCCACTAATTCTTCAACCTCTTTCACAACTGGAATACTGCTAGCTACAGCAGCAATGATTTGA

Coding sequence (CDS)

ATGAAAACTATTGGAGAGGTCGACAAACTGCGTTTATCAGCAGAACCCAAAACGTCATGGACTTCCTTGCTTCTGTCATCTTTGCAAGATTTGGTTGCAGATGATGATAGTATCTGCACTGTTAAGCTTCCACCTACATATCAAAATCACCAGGACACTGAAAAAAGTCGTGCAAATTTACCTAGCACCAGAGCAGCACCAATCCAGCCACTCAATCCCCACCTTTCACCAAGAAGGAACCAGGCAAAACTTCCACCCCAGACTGGCTCCAAACTATTACATTCTGCCAATAATCACAATAATTTTGAGAATAAACATACACATGGAGGGGATCCACTAGATTCAAGCATTGCAACCCCAATGACTGACATGAGAACTCCAAACCAGAATATTACCGTGAGCATTGATATAAAGGATGCTCGCCCGGCATCAGATGTAAGCAGTCCAAATGCCTGCATCAGGTACCCCAGACTAACCCAGAAACCTAACTCTATTCCAGCATTACGAGTCTCAACATCATCCCATTTATACAATACAAGTGGAACGAATGGAATAGCAGTTATGGCAAACCGCACAGCATTGAAGGTTGCTGGATCCACTAATTCTTCAACCTCTTTCACAACTGGAATACTGCTAGCTACAGCAGCAATGATTTGA

Protein sequence

MKTIGEVDKLRLSAEPKTSWTSLLLSSLQDLVADDDSICTVKLPPTYQNHQDTEKSRANLPSTRAAPIQPLNPHLSPRRNQAKLPPQTGSKLLHSANNHNNFENKHTHGGDPLDSSIATPMTDMRTPNQNITVSIDIKDARPASDVSSPNACIRYPRLTQKPNSIPALRVSTSSHLYNTSGTNGIAVMANRTALKVAGSTNSSTSFTTGILLATAAMI
Homology
[Close]
BLAST of Cp4.1LG01g07860 vs. TrEMBL
Match: I3SR33_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.5e-16
Identity = 56/107 (52.34%), Postives = 65/107 (60.75%), Query Frame = 1 

Query: 123 DMRTPNQ----------------NITVSIDIKDARPASDVSSPNACIRYPRLTQKPNSIP 182
           DMR PNQ                 ITV+IDI DARPAS+  SP+AC+RYPRLTQKPNS+P
Sbjct: 2   DMRAPNQVIAGTTAPNMPSSNGTTITVNIDINDARPASEACSPSACMRYPRLTQKPNSMP 61

Query: 183 ALRVSTSSHLYNTSGTNGIAVMANRTALKVAGSTNSSTSFTTGILLA 214
           A  V  S H  N  G  G+A    RT +K AGS  + TS TTG+LLA
Sbjct: 62  AFLVLESFHPRNKDGMKGMAARLKRTNVKAAGSIIARTSLTTGMLLA 108

[Close]
BLAST of Cp4.1LG01g07860 vs. TrEMBL
Match: A0A0A0KLB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G045010 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.0e-06
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 1 

Query: 3  TIGEVDKLRLSAEPKTSWTSL--LLSSLQDLVADDDSICTVKLPPTYQNHQDTEK 56
          TIG+V KL  S E    W SL  L+SSLQD V DD SICTV+LPPTY+N++DT K
Sbjct: 8  TIGDVVKLCSSDELNRPWNSLFLLVSSLQDFVEDDASICTVRLPPTYKNNRDTVK 62

[Close]
BLAST of Cp4.1LG01g07860 vs. NCBI nr
Match: gi|388509318|gb|AFK42725.1| (unknown [Lotus japonicus])

HSP 1 Score: 92.8 bits (229), Expect = 7.9e-16
Identity = 56/107 (52.34%), Postives = 65/107 (60.75%), Query Frame = 1 

Query: 123 DMRTPNQ----------------NITVSIDIKDARPASDVSSPNACIRYPRLTQKPNSIP 182
           DMR PNQ                 ITV+IDI DARPAS+  SP+AC+RYPRLTQKPNS+P
Sbjct: 2   DMRAPNQVIAGTTAPNMPSSNGTTITVNIDINDARPASEACSPSACMRYPRLTQKPNSMP 61

Query: 183 ALRVSTSSHLYNTSGTNGIAVMANRTALKVAGSTNSSTSFTTGILLA 214
           A  V  S H  N  G  G+A    RT +K AGS  + TS TTG+LLA
Sbjct: 62  AFLVLESFHPRNKDGMKGMAARLKRTNVKAAGSIIARTSLTTGMLLA 108

[Close]
BLAST of Cp4.1LG01g07860 vs. NCBI nr
Match: gi|700194472|gb|KGN49649.1| (hypothetical protein Csa_5G045010 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 1.5e-06
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 1 

Query: 3  TIGEVDKLRLSAEPKTSWTSL--LLSSLQDLVADDDSICTVKLPPTYQNHQDTEK 56
          TIG+V KL  S E    W SL  L+SSLQD V DD SICTV+LPPTY+N++DT K
Sbjct: 8  TIGDVVKLCSSDELNRPWNSLFLLVSSLQDFVEDDASICTVRLPPTYKNNRDTVK 62

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g07860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g07860 vs. TrEMBL
Match NameE-valueIdentityDescription
I3SR33_LOTJA5.5e-1652.34Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
A0A0A0KLB7_CUCSA1.0e-0661.82Uncharacterized protein OS=Cucumis sativus GN=Csa_5G045010 PE=4 SV=1[more]
BLAST of Cp4.1LG01g07860 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g07860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|388509318|gb|AFK42725.1|7.9e-1652.34unknown [Lotus japonicus][more]
gi|700194472|gb|KGN49649.1|1.5e-0661.82hypothetical protein Csa_5G045010 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g07860.1Cp4.1LG01g07860.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g07860Cucumber (Chinese Long) v3cpecucB0533
Cp4.1LG01g07860Cucurbita pepo (Zucchini)cpecpeB374
Cp4.1LG01g07860Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g07860Cucurbita maxima (Rimu)cmacpeB722
Cp4.1LG01g07860Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g07860Cucurbita moschata (Rifu)cmocpeB674
Cp4.1LG01g07860Wild cucumber (PI 183967)cpecpiB436
Cp4.1LG01g07860Cucumber (Chinese Long) v2cpecuB428
Cp4.1LG01g07860Cucumber (Chinese Long) v2cpecuB429
Cp4.1LG01g07860Bottle gourd (USVL1VR-Ls)cpelsiB361
Cp4.1LG01g07860Watermelon (Charleston Gray)cpewcgB409
Cp4.1LG01g07860Melon (DHL92) v3.5.1cpemeB383
Cp4.1LG01g07860Cucumber (Gy14) v2cgybcpeB638
Cp4.1LG01g07860Silver-seed gourdcarcpeB0938