Cp4.1LG01g07280 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g07280
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Integrator complex subunit 7
Location	Cp4.1LG01 : 5557372 .. 5560280 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGTCTGGGGCGTCGGAGTGCACGTGTGACTGCTATTGGTTTGAGTATTTGCATCACATGGAGAGAAATGCTGCAGCTTGTGCTATGGAATGGAGTATTGAGCTGGAGAAGGCTCTTCGTTCAAAGAAACCAGGTTCGTCAATTGTCTGACTGATCTATGTTCTCTAATTTCAAACGAAAATTACTAGGCTAGCTTCTAAAAAAGGGAGAGAGAAAAGAAACGATGGTTAGGAATCACGGCTCTTCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTTGTGACTTTGCTTTGAGCTTCCCCAAACGACCTCGTACCAATAGTGATGTATTCCTTACTTATAAACCCATTATAATTTCCTAAATTAGCCAATGTGGGACTCCCCCAACATTCCTCAATAATCCTCCCCTCGAACAAAGTACACTATAGAGCCTCTCCTGAGGCCTATGGAGCCCTCGAACAAAGTACACCCTTTGTTCGACACCTGAGTCACTTTTGACTACACCTTTGAGGCTCACAACTTCTTTGTTCGACATTTGAGGATTCTATTGACATGGCTAAGTTAAGGGCATGACTTTGATACCATGTTAGGAATCACGACTCTCCACAATGGTACGATATTGTCTATTTTGAGCATAAGGTCTCGTGGCTTTGCTTTGGGCTTCCCAAAAGGCCTCATACCAATGGAGATGTATTCCTTACTTATAAACCTAAACCCATGATCATTCCCTAAATTAGCCAACGTGGGACTCCCTCCCAACCATCCTCAATAGTACTGACACAAAAGCTGCTTGTCAATTGAACTAAAAACAACATTGGTGCCTAGTTTGGGGTTGGAGCACAGTAATAGCATGTCTTAATGAAATACAATACTTGTAATTTGTGGTTTATTCAGGTCGGGCTGTTGAAGCTATACTAAAGATTGGATCTCGACTTCAGCAATGGAGTAGAGAGCCAGAGCCAAATATAGCAGTATATAATATGTTTGACCTTGTTACTTGGGAGGATAGGCTATTTTCCAACACTATTCTCCTACGGCTTGCCGATGCGTTTAAGTCTGATGACAAACATATTAGAGTTGCAGTTGTTAAGGTATTCTTATCTGAGCTCAATAGCCGTGACAGGACAAAAAGTAAACAATACCAAGGGGTTCTTTCAAAGGCCAGAGTGCAAAACCACCATGAATTACTGACTCGAGTAAAGGTTGTTCTTGGTGGAGGGGATCCTGAGGCTAGGGCTCTAGCTTTGATTCTATTAGGATGTTGGGCACATTTTGCAGAAGGCAGTGCCCAGATACGTTATATGATACTTTCTAGCATGCTATCTTCTCATATTTCGGAGGTCAGTGCTGTATACATTTTATTTTCTTCTCAAAATTTAATCTTTTATGACAATTTTAGTTTATGTTGTCCAACTGGGTTCAGTATATAAATTCCCTTATGATGAAAGAATGTTTAAGAAAAGCTTTCATTTCCTCAATAAGAGTTTCGTATCTGGCATTGTATCATTATGTAATGAACCTAACTCGAAATCGTTCTTATGGGTATGCACCATGTGAGGAAAAGTAATCCATACTCAATGTACTTATAACACACACAAGGTCCTGCATAAAAACCATGGTGCCGTTGGATGATGCATACAGTATTTCCATGTTATCATGATATACATTCTCTACGAGGCTAGCATACATAATCATGACATTTCTAACTTACTTATAACATATGTTTCAACTCATGGTGCCTCGAGAATCATACACATATTCATAAGATTTACATGCATGGAAGTACCATACATCAAATAAAACATACATAGTTATATCATTATCATATATCACGTAATAAACAAGTATGATACAATAATTTCATCCAACCAGCCCATAGGCATCCCAATAGGAAGTCCACTTATAGTTTTAGGTTTACTTGATGCTCCTAAGCTTGCCTTGGCTGAATATTCTTAGGTTTAGCTTCACGTAATCCAATTTTACCTACAATATTCCTTCCACTCAGAAAATTGAGTTTTGAGCCTATTTGTGGAGCCAAATCCTTTAACTATCCTTAAATCAGTGCTAAATATTATTAGTGGTCCAAAACAGTAGTTGTACGGACATTTTTGGGCTTAATTTGGTCAAAAGCACTCCCGGAATGATCGAAAACGATTCAAACTAGCCAACCGAAACAAGAAAGCCAACCAAATATTCTTTTTCTCAACTATAACACGTATGCCCTGGACTTGGAAGCAAATTCATCTTCTTGATTGAGAATAAGTTTCATAAATAATTTATAGAAGGGTTTTGGGGTAGAGACTGGATTGTTTGTTTAGTGGACTCATTCCTCGACAAAACTAGCAGTAAGCTAAAACGTAGTTCATAGAGGCCAAAATAATTTTAATTATAGTATTTAGAAAATTGTTGTGGATGCTCTCAAGGAAAAATCAGTTACCTTAACCTACCAAATCTTGTACCGTCGTTAACAATTTCGTTTAAGGTTTAGCATTGCTTTATTGTGTGTTGTGTTTTATTAGTGGATTATTAGGAAATTTAACGAAGTGTATGTAAAGCCAAACCCAATTTTATGTATTCTGGACATTCCTGTTTAAGAGGAGATTCCTTCTCCATCCTATACACTATAATTGCATGATTTCTTAATAAACCTATCTACACAAAATTTTGAACATATTTTAAAGTAAGGATATCCTCTTTTACAGGTTAAAGCATCTATATTTGCTGCAGCATGCATTAGTCAGTTAGCAGATGACTTTGCGCAAGTCTTCTTAGCGATTTTGGTTAATATAATGACTTCTACTACATCATTGGCCATCAAAATGGCTGGAGCTCGAGTGTTCGCGAAATTGGGATGCTCACATTCAATGGCCAAAACGGCTTACAAGGTTATGCTCATCTTTTGA

mRNA sequence

GGGTCTGGGGCGTCGGAGTGCACGTGTGACTGCTATTGGTTTGAGTATTTGCATCACATGGAGAGAAATGCTGCAGCTTGTGCTATGGAATGGAGTATTGAGCTGGAGAAGGCTCTTCGTTCAAAGAAACCAGGTCGGGCTGTTGAAGCTATACTAAAGATTGGATCTCGACTTCAGCAATGGAGTAGAGAGCCAGAGCCAAATATAGCAGTATATAATATGTTTGACCTTGTTACTTGGGAGGATAGGCTATTTTCCAACACTATTCTCCTACGGCTTGCCGATGCGTTTAAGTCTGATGACAAACATATTAGAGTTGCAGTTGTTAAGGTATTCTTATCTGAGCTCAATAGCCGTGACAGGACAAAAAGTAAACAATACCAAGGGGTTCTTTCAAAGGCCAGAGTGCAAAACCACCATGAATTACTGACTCGAGTAAAGGTTGTTCTTGGTGGAGGGGATCCTGAGGCTAGGGCTCTAGCTTTGATTCTATTAGGATGTTGGGCACATTTTGCAGAAGGCAGTGCCCAGATACGTTATATGATACTTTCTAGCATGCTATCTTCTCATATTTCGGAGGTTAAAGCATCTATATTTGCTGCAGCATGCATTAGTCAGTTAGCAGATGACTTTGCGCAAGTCTTCTTAGCGATTTTGGTTAATATAATGACTTCTACTACATCATTGGCCATCAAAATGGCTGGAGCTCGAGTGTTCGCGAAATTGGGATGCTCACATTCAATGGCCAAAACGGCTTACAAGGTTATGCTCATCTTTTGA

Coding sequence (CDS)

GGGTCTGGGGCGTCGGAGTGCACGTGTGACTGCTATTGGTTTGAGTATTTGCATCACATGGAGAGAAATGCTGCAGCTTGTGCTATGGAATGGAGTATTGAGCTGGAGAAGGCTCTTCGTTCAAAGAAACCAGGTCGGGCTGTTGAAGCTATACTAAAGATTGGATCTCGACTTCAGCAATGGAGTAGAGAGCCAGAGCCAAATATAGCAGTATATAATATGTTTGACCTTGTTACTTGGGAGGATAGGCTATTTTCCAACACTATTCTCCTACGGCTTGCCGATGCGTTTAAGTCTGATGACAAACATATTAGAGTTGCAGTTGTTAAGGTATTCTTATCTGAGCTCAATAGCCGTGACAGGACAAAAAGTAAACAATACCAAGGGGTTCTTTCAAAGGCCAGAGTGCAAAACCACCATGAATTACTGACTCGAGTAAAGGTTGTTCTTGGTGGAGGGGATCCTGAGGCTAGGGCTCTAGCTTTGATTCTATTAGGATGTTGGGCACATTTTGCAGAAGGCAGTGCCCAGATACGTTATATGATACTTTCTAGCATGCTATCTTCTCATATTTCGGAGGTTAAAGCATCTATATTTGCTGCAGCATGCATTAGTCAGTTAGCAGATGACTTTGCGCAAGTCTTCTTAGCGATTTTGGTTAATATAATGACTTCTACTACATCATTGGCCATCAAAATGGCTGGAGCTCGAGTGTTCGCGAAATTGGGATGCTCACATTCAATGGCCAAAACGGCTTACAAGGTTATGCTCATCTTTTGA

Protein sequence

GSGASECTCDCYWFEYLHHMERNAAACAMEWSIELEKALRSKKPGRAVEAILKIGSRLQQWSREPEPNIAVYNMFDLVTWEDRLFSNTILLRLADAFKSDDKHIRVAVVKVFLSELNSRDRTKSKQYQGVLSKARVQNHHELLTRVKVVLGGGDPEARALALILLGCWAHFAEGSAQIRYMILSSMLSSHISEVKASIFAAACISQLADDFAQVFLAILVNIMTSTTSLAIKMAGARVFAKLGCSHSMAKTAYKVMLIF

Homology

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BLAST of Cp4.1LG01g07280 vs. TrEMBL
Match: A0A0A0KJG8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G083800 PE=4 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 4.8e-112
Identity = 212/240 (88.33%), Postives = 227/240 (94.58%), Query Frame = 1


Query: 20  MERNAAACAMEWSIELEKALRSKKPGRAVEAILKIGSRLQQWSREPEPNIAVYNMFDLVT 79
           MER++AACAMEWSIELEKALR KKPGRAVEAI +IG RLQQWSREPEPN+AVYNMFDLVT
Sbjct: 1   MERSSAACAMEWSIELEKALRLKKPGRAVEAIRQIGCRLQQWSREPEPNVAVYNMFDLVT 60

Query: 80  WEDRLFSNTILLRLADAFKSDDKHIRVAVVKVFLSELNSRDRTKSKQYQGVLSKARVQNH 139
           WEDRLFSNTILLRLADAFK DDKHIR+AVV+VFLSEL SRD ++SKQYQG+LSKARVQNH
Sbjct: 61  WEDRLFSNTILLRLADAFKFDDKHIRLAVVRVFLSELYSRDSSRSKQYQGILSKARVQNH 120

Query: 140 HELLTRVKVVLGGGDPEARALALILLGCWAHFAEGSAQIRYMILSSMLSSHISEVKASIF 199
           HELLTRVKVVL GGDPEAR LALILLGCWAHFA+ SAQIRY+I SS+ SSH+SEVKASIF
Sbjct: 121 HELLTRVKVVLNGGDPEARGLALILLGCWAHFAKDSAQIRYLIFSSLFSSHLSEVKASIF 180

Query: 200 AAACISQLADDFAQVFLAILVNIMTSTTSLAIKMAGARVFAKLGCSHSMAKTAYKVMLIF 259
           AAACI QLADDFAQVFLAILVNIMTSTTSL I+MAGARVFAKLGCSHSMAKTAYKVML+F
Sbjct: 181 AAACICQLADDFAQVFLAILVNIMTSTTSLTIRMAGARVFAKLGCSHSMAKTAYKVMLVF 240

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BLAST of Cp4.1LG01g07280 vs. TrEMBL
Match: A0A067GPE1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001104mg PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 6.2e-75
Identity = 152/240 (63.33%), Postives = 192/240 (80.00%), Query Frame = 1


Query: 20  MERNAAACAMEWSIELEKALRSKKPGRAVEAILKIGSRLQQWSREPEPNIAVYNMFDLVT 79
           MERNA ACAMEWSIELEK LRSK PGR VEAIL+I  RL+QW+ EPE  + VYNMF LV 
Sbjct: 1   MERNATACAMEWSIELEKGLRSKIPGRCVEAILQIEPRLKQWAGEPEATMVVYNMFGLVP 60

Query: 80  WEDRLFSNTILLRLADAFKSDDKHIRVAVVKVFLS-ELNSRDRTKSKQYQGVLSKARVQN 139
            E+RLF+NTI LRLA+AF+   KHIRV++V+VFLS   + RD+ +SK+ +G+LSK+RV N
Sbjct: 61  GEERLFANTIFLRLAEAFQLGHKHIRVSIVRVFLSLRRHCRDKKRSKRIKGILSKSRVHN 120

Query: 140 HHELLTRVKVVLGGGDPEARALALILLGCWAHFAEGSAQIRYMILSSMLSSHISEVKASI 199
           H ELL RVK+V   GDPE+RALAL+L GCWA FA+ SA IRY++LSS++SS++ EV+AS+
Sbjct: 121 HLELLKRVKIVFDTGDPESRALALVLFGCWADFAKDSAHIRYLVLSSLVSSNVLEVRASL 180

Query: 200 FAAACISQLADDFAQVFLAILVNIMT-STTSLAIKMAGARVFAKLGCSHSMAKTAYKVML 258
           FAA C S+LADDFA V L +LVN++T S T   +++A ARVFAK+GCS+S+AK AYK  L
Sbjct: 181 FAAGCFSELADDFASVLLEMLVNLVTYSETESTVRIAAARVFAKMGCSYSVAKRAYKTGL 240

[Close]

BLAST of Cp4.1LG01g07280 vs. TrEMBL
Match: A0A067GPN8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001104mg PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 6.2e-75
Identity = 152/240 (63.33%), Postives = 192/240 (80.00%), Query Frame = 1


Query: 20  MERNAAACAMEWSIELEKALRSKKPGRAVEAILKIGSRLQQWSREPEPNIAVYNMFDLVT 79
           MERNA ACAMEWSIELEK LRSK PGR VEAIL+I  RL+QW+ EPE  + VYNMF LV 
Sbjct: 1   MERNATACAMEWSIELEKGLRSKIPGRCVEAILQIEPRLKQWAGEPEATMVVYNMFGLVP 60

Query: 80  WEDRLFSNTILLRLADAFKSDDKHIRVAVVKVFLS-ELNSRDRTKSKQYQGVLSKARVQN 139
            E+RLF+NTI LRLA+AF+   KHIRV++V+VFLS   + RD+ +SK+ +G+LSK+RV N
Sbjct: 61  GEERLFANTIFLRLAEAFQLGHKHIRVSIVRVFLSLRRHCRDKKRSKRIKGILSKSRVHN 120

Query: 140 HHELLTRVKVVLGGGDPEARALALILLGCWAHFAEGSAQIRYMILSSMLSSHISEVKASI 199
           H ELL RVK+V   GDPE+RALAL+L GCWA FA+ SA IRY++LSS++SS++ EV+AS+
Sbjct: 121 HLELLKRVKIVFDTGDPESRALALVLFGCWADFAKDSAHIRYLVLSSLVSSNVLEVRASL 180

Query: 200 FAAACISQLADDFAQVFLAILVNIMT-STTSLAIKMAGARVFAKLGCSHSMAKTAYKVML 258
           FAA C S+LADDFA V L +LVN++T S T   +++A ARVFAK+GCS+S+AK AYK  L
Sbjct: 181 FAAGCFSELADDFASVLLEMLVNLVTYSETESTVRIAAARVFAKMGCSYSVAKRAYKTGL 240

[Close]

BLAST of Cp4.1LG01g07280 vs. TrEMBL
Match: U7E187_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0025s00450g PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 4.0e-74
Identity = 152/241 (63.07%), Postives = 191/241 (79.25%), Query Frame = 1


Query: 20  MERNAAACAMEWSIELEKALRSKKPGRAVEAILKIGSRLQQWSREPEPNIAVYNMFDLVT 79
           MER +AACAMEWSIELEKALRSKKPG+ +E I +IG R+Q+WS+EP+P +AVYNMF LVT
Sbjct: 1   MERISAACAMEWSIELEKALRSKKPGQTIEGIQRIGKRIQEWSKEPKPTMAVYNMFGLVT 60

Query: 80  WEDRLFSNTILLRLADAFKSDDKHIRVAVVKVFLSELNSRD--RTKSKQYQGVLSKARVQ 139
            EDRLF+NTILLRLADAF+  D+  RV++VKVFL EL SRD  + K +QY+G+LSK RVQ
Sbjct: 61  GEDRLFANTILLRLADAFRFGDRETRVSIVKVFLLELKSRDNKKMKGRQYRGILSKDRVQ 120

Query: 140 NHHELLTRVKVVLGGGDPEARALALILLGCWAHFAEGSAQIRYMILSSMLSSHISEVKAS 199
           NH ELL RVK+V   GD +++ALAL L GCWA FA+ SA IRY+ILSSM+SS + +V+AS
Sbjct: 121 NHVELLKRVKIVFDTGDVDSKALALALFGCWAPFAKDSAHIRYLILSSMISSDVLQVQAS 180

Query: 200 IFAAACISQLADDFAQVFLAILVNIMTST-TSLAIKMAGARVFAKLGCSHSMAKTAYKVM 258
           +FAA C  +LA DF  V L +LVN++TS+ T L I++ G RVFAK+G S+S+A  AYK  
Sbjct: 181 LFAAGCFCELAGDFVPVVLEMLVNMVTSSETLLTIRLVGTRVFAKMGPSYSVASRAYKTG 240

[Close]

BLAST of Cp4.1LG01g07280 vs. TrEMBL
Match: B9T1M5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0122800 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 4.6e-70
Identity = 145/240 (60.42%), Postives = 188/240 (78.33%), Query Frame = 1


Query: 20  MERNAAACAMEWSIELEKALRSKKPGRAVEAILKIGSRLQQWSREPEPNIAVYNMFDLVT 79
           MER +AACAMEWSIELEK+LRSK+PG+AV+AI + G+RLQQWSREP+P +AVY++F LV 
Sbjct: 1   MERISAACAMEWSIELEKSLRSKRPGQAVKAIQQFGARLQQWSREPKPTMAVYHIFGLVM 60

Query: 80  WEDRLFSNTILLRLADAFKSDDKHIRVAVVKVFLSELNSRDR-TKSKQYQGVLSKARVQN 139
            EDR+F+NTI LRLAD F+  D+  R+++V VFLSE  +  +  K ++Y+G+LSK R+ N
Sbjct: 61  GEDRVFANTIFLRLADVFRLGDRDTRLSIVSVFLSEFRNHVKGKKGRRYEGILSKDRIHN 120

Query: 140 HHELLTRVKVVLGGGDPEARALALILLGCWAHFAEGSAQIRYMILSSMLSSHISEVKASI 199
           H ELL RVK+V   GD E+RA+AL+L GCWA FA+ SA IRY+ILSS++SS I EVKAS+
Sbjct: 121 HMELLKRVKIVYDTGDVESRAMALVLFGCWADFAKDSAHIRYLILSSLVSSEILEVKASL 180

Query: 200 FAAACISQLADDFAQVFLAILVNIMTS-TTSLAIKMAGARVFAKLGCSHSMAKTAYKVML 258
           FAA+C  +LA DFA V L +L NIM S  TSL I++AG RV AK+G S+S A +AYK+ L
Sbjct: 181 FAASCFCELAADFAYVVLEMLPNIMLSPDTSLTIRLAGVRVIAKMGSSYSTANSAYKIGL 240

[Close]

BLAST of Cp4.1LG01g07280 vs. TAIR10
Match: AT4G20060.1 (AT4G20060.1 ARM repeat superfamily protein)

HSP 1 Score: 235.7 bits (600), Expect = 3.1e-62
Identity = 133/241 (55.19%), Postives = 172/241 (71.37%), Query Frame = 1


Query: 20  MERNAAACAMEWSIELEKALRSKKPGRAVEAILKIGSRLQQWSREPEPNIAVYNMFDLVT 79
           ME+ +AACAMEWSI+LEK+LRSK   +AVEAIL+ G +L+QWS+EPE  IAVYN+F LV 
Sbjct: 1   MEKVSAACAMEWSIKLEKSLRSKNSVKAVEAILETGGKLEQWSKEPESAIAVYNLFGLVP 60

Query: 80  WEDRLFSNTILLRLADAFKSDDKHIRVAVVKVFLSELN-SRDRTKSKQYQGVLSKARVQN 139
            ED+LFSNTILLRL DAF   DK I++AVV+VF+S    SR +  ++     LSK RV N
Sbjct: 61  EEDKLFSNTILLRLVDAFCVGDKLIKLAVVRVFMSMFKLSRGKNVNESASWFLSKGRVHN 120

Query: 140 HHELLTRVKVVLGGGDPEARALALILLGCWAHFAEGSAQIRYMILSSMLSSHISEVKASI 199
           H ELLTRVK V   GD E++ALALIL GCW  FA   A +RY++ SSM+S H  E ++++
Sbjct: 121 HLELLTRVKNVYDKGDTESKALALILFGCWRDFASEFAPVRYLVFSSMVSPHDLEGRSAL 180

Query: 200 FAAACISQLADDFAQVFLAILVNIMTSTTSLAIK--MAGARVFAKLGCSHSMAKTAYKVM 258
           FAAAC  ++ADDFA V L +L N M     +  K  +A  RVFAK+GCSH++A  A+K+ 
Sbjct: 181 FAAACFCEVADDFALVVLGML-NDMVKFPDITPKTRLAAVRVFAKMGCSHTIANRAFKIC 240

[Close]

BLAST of Cp4.1LG01g07280 vs. NCBI nr
Match: gi|700194541|gb|KGN49718.1| (hypothetical protein Csa_5G083800 [Cucumis sativus])

HSP 1 Score: 412.1 bits (1058), Expect = 7.0e-112
Identity = 212/240 (88.33%), Postives = 227/240 (94.58%), Query Frame = 1


Query: 20  MERNAAACAMEWSIELEKALRSKKPGRAVEAILKIGSRLQQWSREPEPNIAVYNMFDLVT 79
           MER++AACAMEWSIELEKALR KKPGRAVEAI +IG RLQQWSREPEPN+AVYNMFDLVT
Sbjct: 1   MERSSAACAMEWSIELEKALRLKKPGRAVEAIRQIGCRLQQWSREPEPNVAVYNMFDLVT 60

Query: 80  WEDRLFSNTILLRLADAFKSDDKHIRVAVVKVFLSELNSRDRTKSKQYQGVLSKARVQNH 139
           WEDRLFSNTILLRLADAFK DDKHIR+AVV+VFLSEL SRD ++SKQYQG+LSKARVQNH
Sbjct: 61  WEDRLFSNTILLRLADAFKFDDKHIRLAVVRVFLSELYSRDSSRSKQYQGILSKARVQNH 120

Query: 140 HELLTRVKVVLGGGDPEARALALILLGCWAHFAEGSAQIRYMILSSMLSSHISEVKASIF 199
           HELLTRVKVVL GGDPEAR LALILLGCWAHFA+ SAQIRY+I SS+ SSH+SEVKASIF
Sbjct: 121 HELLTRVKVVLNGGDPEARGLALILLGCWAHFAKDSAQIRYLIFSSLFSSHLSEVKASIF 180

Query: 200 AAACISQLADDFAQVFLAILVNIMTSTTSLAIKMAGARVFAKLGCSHSMAKTAYKVMLIF 259
           AAACI QLADDFAQVFLAILVNIMTSTTSL I+MAGARVFAKLGCSHSMAKTAYKVML+F
Sbjct: 181 AAACICQLADDFAQVFLAILVNIMTSTTSLTIRMAGARVFAKLGCSHSMAKTAYKVMLVF 240

[Close]

BLAST of Cp4.1LG01g07280 vs. NCBI nr
Match: gi|778698355|ref|XP_011654519.1| (PREDICTED: uncharacterized protein LOC101204851 isoform X2 [Cucumis sativus])

HSP 1 Score: 406.4 bits (1043), Expect = 3.8e-110
Identity = 209/239 (87.45%), Postives = 224/239 (93.72%), Query Frame = 1


Query: 20  MERNAAACAMEWSIELEKALRSKKPGRAVEAILKIGSRLQQWSREPEPNIAVYNMFDLVT 79
           MER++AACAMEWSIELEKALR KKPGRAVEAI +IG RLQQWSREPEPN+AVYNMFDLVT
Sbjct: 1   MERSSAACAMEWSIELEKALRLKKPGRAVEAIRQIGCRLQQWSREPEPNVAVYNMFDLVT 60

Query: 80  WEDRLFSNTILLRLADAFKSDDKHIRVAVVKVFLSELNSRDRTKSKQYQGVLSKARVQNH 139
           WEDRLFSNTILLRLADAFK DDKHIR+AVV+VFLSEL SRD ++SKQYQG+LSKARVQNH
Sbjct: 61  WEDRLFSNTILLRLADAFKFDDKHIRLAVVRVFLSELYSRDSSRSKQYQGILSKARVQNH 120

Query: 140 HELLTRVKVVLGGGDPEARALALILLGCWAHFAEGSAQIRYMILSSMLSSHISEVKASIF 199
           HELLTRVKVVL GGDPEAR LALILLGCWAHFA+ SAQIRY+I SS+ SSH+SEVKASIF
Sbjct: 121 HELLTRVKVVLNGGDPEARGLALILLGCWAHFAKDSAQIRYLIFSSLFSSHLSEVKASIF 180

Query: 200 AAACISQLADDFAQVFLAILVNIMTSTTSLAIKMAGARVFAKLGCSHSMAKTAYKVMLI 259
           AAACI QLADDFAQVFLAILVNIMTSTTSL I+MAGARVFAKLGCSHSMAKTAYKV  +
Sbjct: 181 AAACICQLADDFAQVFLAILVNIMTSTTSLTIRMAGARVFAKLGCSHSMAKTAYKVQFL 239

[Close]

BLAST of Cp4.1LG01g07280 vs. NCBI nr
Match: gi|778698352|ref|XP_011654518.1| (PREDICTED: uncharacterized protein LOC101204851 isoform X1 [Cucumis sativus])

HSP 1 Score: 404.4 bits (1038), Expect = 1.4e-109
Identity = 209/238 (87.82%), Postives = 223/238 (93.70%), Query Frame = 1


Query: 20  MERNAAACAMEWSIELEKALRSKKPGRAVEAILKIGSRLQQWSREPEPNIAVYNMFDLVT 79
           MER++AACAMEWSIELEKALR KKPGRAVEAI +IG RLQQWSREPEPN+AVYNMFDLVT
Sbjct: 1   MERSSAACAMEWSIELEKALRLKKPGRAVEAIRQIGCRLQQWSREPEPNVAVYNMFDLVT 60

Query: 80  WEDRLFSNTILLRLADAFKSDDKHIRVAVVKVFLSELNSRDRTKSKQYQGVLSKARVQNH 139
           WEDRLFSNTILLRLADAFK DDKHIR+AVV+VFLSEL SRD ++SKQYQG+LSKARVQNH
Sbjct: 61  WEDRLFSNTILLRLADAFKFDDKHIRLAVVRVFLSELYSRDSSRSKQYQGILSKARVQNH 120

Query: 140 HELLTRVKVVLGGGDPEARALALILLGCWAHFAEGSAQIRYMILSSMLSSHISEVKASIF 199
           HELLTRVKVVL GGDPEAR LALILLGCWAHFA+ SAQIRY+I SS+ SSH+SEVKASIF
Sbjct: 121 HELLTRVKVVLNGGDPEARGLALILLGCWAHFAKDSAQIRYLIFSSLFSSHLSEVKASIF 180

Query: 200 AAACISQLADDFAQVFLAILVNIMTSTTSLAIKMAGARVFAKLGCSHSMAKTAYKVML 258
           AAACI QLADDFAQVFLAILVNIMTSTTSL I+MAGARVFAKLGCSHSMAKTAYK  L
Sbjct: 181 AAACICQLADDFAQVFLAILVNIMTSTTSLTIRMAGARVFAKLGCSHSMAKTAYKAGL 238

[Close]

BLAST of Cp4.1LG01g07280 vs. NCBI nr
Match: gi|659129538|ref|XP_008464722.1| (PREDICTED: uncharacterized protein LOC103502541 isoform X1 [Cucumis melo])

HSP 1 Score: 399.8 bits (1026), Expect = 3.6e-108
Identity = 208/238 (87.39%), Postives = 223/238 (93.70%), Query Frame = 1


Query: 20  MERNAAACAMEWSIELEKALRSKKPGRAVEAILKIGSRLQQWSREPEPNIAVYNMFDLVT 79
           MERN+AACAMEWSIELEKALR KKPGRAVEAI +IG RLQQWSREPEPNIAVYNMFDLVT
Sbjct: 1   MERNSAACAMEWSIELEKALRFKKPGRAVEAIRQIGCRLQQWSREPEPNIAVYNMFDLVT 60

Query: 80  WEDRLFSNTILLRLADAFKSDDKHIRVAVVKVFLSELNSRDRTKSKQYQGVLSKARVQNH 139
           WED+LFSNTILLRLADAFK DDKHIR+AVV+VFLSEL SRD ++SKQYQG+LSKARVQN 
Sbjct: 61  WEDKLFSNTILLRLADAFKIDDKHIRLAVVRVFLSELYSRDSSRSKQYQGILSKARVQNP 120

Query: 140 HELLTRVKVVLGGGDPEARALALILLGCWAHFAEGSAQIRYMILSSMLSSHISEVKASIF 199
           HELLTRVKVVL GGDPEA+ALALI+LGCWAHFA+ SAQIRY+I  S+ SSH+SEVKASIF
Sbjct: 121 HELLTRVKVVLHGGDPEAKALALIVLGCWAHFAKDSAQIRYLIFYSLFSSHLSEVKASIF 180

Query: 200 AAACISQLADDFAQVFLAILVNIMTSTTSLAIKMAGARVFAKLGCSHSMAKTAYKVML 258
           AAACISQLADDFAQVFL ILVNIMTSTTSLAI+MAGARVFAKLGCSHSMAKTAYK  L
Sbjct: 181 AAACISQLADDFAQVFLVILVNIMTSTTSLAIRMAGARVFAKLGCSHSMAKTAYKAGL 238

[Close]

BLAST of Cp4.1LG01g07280 vs. NCBI nr
Match: gi|802753789|ref|XP_012088572.1| (PREDICTED: uncharacterized protein LOC105647182 isoform X1 [Jatropha curcas])

HSP 1 Score: 289.7 bits (740), Expect = 5.2e-75
Identity = 152/240 (63.33%), Postives = 194/240 (80.83%), Query Frame = 1


Query: 20  MERNAAACAMEWSIELEKALRSKKPGRAVEAILKIGSRLQQWSREPEPNIAVYNMFDLVT 79
           +ER +AACAMEWSIELEKALRSKKPG+AV A+ +IGSRL QWSREP+P +AVYNMF LV 
Sbjct: 12  LERISAACAMEWSIELEKALRSKKPGQAVNALQQIGSRLHQWSREPKPTMAVYNMFGLVP 71

Query: 80  WEDRLFSNTILLRLADAFKSDDKHIRVAVVKVFLSELNSRDR-TKSKQYQGVLSKARVQN 139
            EDRLF+NTILLRLADAF+  DK  R++VV++FLSE  +RD+  K ++++G+LSK+RV N
Sbjct: 72  GEDRLFANTILLRLADAFRLGDKDTRLSVVRIFLSEFRNRDKEQKGERHEGILSKSRVHN 131

Query: 140 HHELLTRVKVVLGGGDPEARALALILLGCWAHFAEGSAQIRYMILSSMLSSHISEVKASI 199
           H ELL RVK+    GD E+RALALIL GCWA FA+ ++ IRY+ILSS++SS I EVKAS+
Sbjct: 132 HMELLKRVKIAFDTGDVESRALALILFGCWADFAKDNSHIRYLILSSLVSSEILEVKASL 191

Query: 200 FAAACISQLADDFAQVFLAILVNIMTS-TTSLAIKMAGARVFAKLGCSHSMAKTAYKVML 258
           F+A C  +LA DFA V L +L+NI+ S  TS A+K+AG RVF+K+GCSHS+A  A+K+ L
Sbjct: 192 FSAGCFCELAADFAPVVLEMLLNILISPDTSTAVKLAGVRVFSKMGCSHSVANRAHKIGL 251

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g07280 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g07280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJG8_CUCSA	4.8e-112	88.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G083800 PE=4 SV=1	[more]
A0A067GPE1_CITSI	6.2e-75	63.33	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001104mg PE=4 SV=1	[more]
A0A067GPN8_CITSI	6.2e-75	63.33	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001104mg PE=4 SV=1	[more]
U7E187_POPTR	4.0e-74	63.07	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0025s00450g PE=4 SV=1	[more]
B9T1M5_RICCO	4.6e-70	60.42	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0122800 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g07280 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G20060.1	3.1e-62	55.19	ARM repeat superfamily protein	[more]

BLAST of Cp4.1LG01g07280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194541\|gb\|KGN49718.1\|	7.0e-112	88.33	hypothetical protein Csa_5G083800 [Cucumis sativus]	[more]
gi\|778698355\|ref\|XP_011654519.1\|	3.8e-110	87.45	PREDICTED: uncharacterized protein LOC101204851 isoform X2 [Cucumis sativus]	[more]
gi\|778698352\|ref\|XP_011654518.1\|	1.4e-109	87.82	PREDICTED: uncharacterized protein LOC101204851 isoform X1 [Cucumis sativus]	[more]
gi\|659129538\|ref\|XP_008464722.1\|	3.6e-108	87.39	PREDICTED: uncharacterized protein LOC103502541 isoform X1 [Cucumis melo]	[more]
gi\|802753789\|ref\|XP_012088572.1\|	5.2e-75	63.33	PREDICTED: uncharacterized protein LOC105647182 isoform X1 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

Vocabulary: **INTERPRO**
Term	Definition
IPR016024	ARM-type_fold
IPR011989	ARM-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010413	glucuronoxylan metabolic process
biological_process	GO:0045492	xylan biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g07280.1	Cp4.1LG01g07280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	G3DSA:1.25.10.10		coord: 89..247 score: 5.
IPR016024	Armadillo-type fold	unknown	SSF48371	ARM repeat	coord: 89..244 score: 1.
None	No IPR available	PANTHER	PTHR13322	C1ORF73 PROTEIN	coord: 13..255 score: 5.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g07280	MELO3C026444	Melon (DHL92) v3.5.1	cpemeB368
Cp4.1LG01g07280	Bhi07G000343	Wax gourd	cpewgoB0553

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g07280	Silver-seed gourd	carcpeB0938
Cp4.1LG01g07280	Cucurbita pepo (Zucchini)	cpecpeB374
Cp4.1LG01g07280	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g07280	Cucurbita maxima (Rimu)	cmacpeB722
Cp4.1LG01g07280	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g07280	Cucurbita moschata (Rifu)	cmocpeB674
Cp4.1LG01g07280	Bottle gourd (USVL1VR-Ls)	cpelsiB361
Cp4.1LG01g07280	Watermelon (Charleston Gray)	cpewcgB409
Cp4.1LG01g07280	Melon (DHL92) v3.5.1	cpemeB431
Cp4.1LG01g07280	Melon (DHL92) v3.6.1	cpemedB422
Cp4.1LG01g07280	Melon (DHL92) v3.6.1	cpemedB502