Cp4.1LG01g07070 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g07070
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionLeucine-rich repeat family protein
LocationCp4.1LG01 : 3937537 .. 3937839 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGAAGCTCTCTGCTTTATCACTGGAGAACAACAACTTTACCGGAATGATTCCGGTTATCTACGCGTTCAAAACCGCCGCGCCAAATCCCGGCATCTCGCCGCTCGAGAGGCTGCTGTTGGGCGGAAACTACTTGTTCGGGCCAATCCCAGAGCCCTTGCGGCGGATGAAACCCGACTCCGCCACCGTCCGACTCGGCGGGAACTGTCTATTTCGCTGCCCAACATTCTTCTTCTTCTGTGAAGGCGGCGAACAAAAATCCACCGCCGTGTGCCGGAGCGCCGGCCCGATGATCCCATAA

mRNA sequence

ATGCCGAAGCTCTCTGCTTTATCACTGGAGAACAACAACTTTACCGGAATGATTCCGGTTATCTACGCGTTCAAAACCGCCGCGCCAAATCCCGGCATCTCGCCGCTCGAGAGGCTGCTGTTGGGCGGAAACTACTTGTTCGGGCCAATCCCAGAGCCCTTGCGGCGGATGAAACCCGACTCCGCCACCGTCCGACTCGGCGGGAACTGTCTATTTCGCTGCCCAACATTCTTCTTCTTCTGTGAAGGCGGCGAACAAAAATCCACCGCCGTGTGCCGGAGCGCCGGCCCGATGATCCCATAA

Coding sequence (CDS)

ATGCCGAAGCTCTCTGCTTTATCACTGGAGAACAACAACTTTACCGGAATGATTCCGGTTATCTACGCGTTCAAAACCGCCGCGCCAAATCCCGGCATCTCGCCGCTCGAGAGGCTGCTGTTGGGCGGAAACTACTTGTTCGGGCCAATCCCAGAGCCCTTGCGGCGGATGAAACCCGACTCCGCCACCGTCCGACTCGGCGGGAACTGTCTATTTCGCTGCCCAACATTCTTCTTCTTCTGTGAAGGCGGCGAACAAAAATCCACCGCCGTGTGCCGGAGCGCCGGCCCGATGATCCCATAA

Protein sequence

MPKLSALSLENNNFTGMIPVIYAFKTAAPNPGISPLERLLLGGNYLFGPIPEPLRRMKPDSATVRLGGNCLFRCPTFFFFCEGGEQKSTAVCRSAGPMIP
Homology
[Close]
BLAST of Cp4.1LG01g07070 vs. TrEMBL
Match: A0A0A0KXY8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G043880 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 8.3e-44
Identity = 84/100 (84.00%), Postives = 88/100 (88.00%), Query Frame = 1 

Query: 1   MPKLSALSLENNNFTGMIPVIYAFKTAAPNPGISPLERLLLGGNYLFGPIPEPLRRMKPD 60
           MPKLSALSLENNNFTGMIP++YAFKT AP PGISP  RLLLGGNYL GPIPEPLRRMK D
Sbjct: 318 MPKLSALSLENNNFTGMIPILYAFKTTAPEPGISPFVRLLLGGNYLSGPIPEPLRRMKAD 377

Query: 61  SATVRLGGNCLFRCPTFFFFCEGGEQKSTAVCRSAGPMIP 101
           SATVRL GNCLF CPT FFFC+GGEQKS   CRSAGP+IP
Sbjct: 378 SATVRLAGNCLFWCPTLFFFCQGGEQKSPVECRSAGPIIP 417

[Close]
BLAST of Cp4.1LG01g07070 vs. TrEMBL
Match: M5VQ43_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006641mg PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.7e-34
Identity = 69/100 (69.00%), Postives = 77/100 (77.00%), Query Frame = 1 

Query: 1   MPKLSALSLENNNFTGMIPVIYAFKTAAPNPGISPLERLLLGGNYLFGPIPEPLRRMKPD 60
           MPKLSAL+LENN F GMIP  YAFK A P  G+S  ERLLLGGNYLFGPIP PL  +KP 
Sbjct: 303 MPKLSALTLENNKFMGMIPTQYAFKVAVPGSGVSAFERLLLGGNYLFGPIPGPLLGLKPG 362

Query: 61  SATVRLGGNCLFRCPTFFFFCEGGEQKSTAVCRSAGPMIP 101
           SA V L  NCL+RCP  FFFC+GG+QKS + CRS GP+IP
Sbjct: 363 SANVGLADNCLYRCPRVFFFCQGGDQKSLSECRSFGPIIP 402

[Close]
BLAST of Cp4.1LG01g07070 vs. TrEMBL
Match: A5AN28_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g02840 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 3.5e-34
Identity = 67/100 (67.00%), Postives = 76/100 (76.00%), Query Frame = 1 

Query: 1   MPKLSALSLENNNFTGMIPVIYAFKTAAPNPGISPLERLLLGGNYLFGPIPEPLRRMKPD 60
           M KLSALSLENN FTGMIP  YA K   P+ G+SP ERL+LGGNYLFGPIP PL  ++PD
Sbjct: 323 MTKLSALSLENNKFTGMIPTQYALKAVVPDAGVSPFERLMLGGNYLFGPIPSPLMELRPD 382

Query: 61  SATVRLGGNCLFRCPTFFFFCEGGEQKSTAVCRSAGPMIP 101
            ATVRL  NCL+RCP  F FC+GGEQKS   C+  GP+IP
Sbjct: 383 GATVRLVDNCLYRCPAMFSFCQGGEQKSLMECKRFGPVIP 422

[Close]
BLAST of Cp4.1LG01g07070 vs. TrEMBL
Match: W9T0X6_9ROSA (Receptor-like protein 12 OS=Morus notabilis GN=L484_026730 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 6.0e-34
Identity = 69/100 (69.00%), Postives = 78/100 (78.00%), Query Frame = 1 

Query: 1   MPKLSALSLENNNFTGMIPVIYAFKTAAPNPGISPLERLLLGGNYLFGPIPEPLRRMKPD 60
           MPKLSALSLENN FTGMIP  YA KT  P+ G+SP  RLLLG NYL GPIP PL ++KP 
Sbjct: 327 MPKLSALSLENNKFTGMIPTQYAVKTVFPSWGVSPFSRLLLGRNYLLGPIPGPLLQLKPG 386

Query: 61  SATVRLGGNCLFRCPTFFFFCEGGEQKSTAVCRSAGPMIP 101
           SA V L GNCLFRCP  FFFC+GGEQKS + C++ GP+IP
Sbjct: 387 SAHVELTGNCLFRCPEIFFFCQGGEQKSLSECKAFGPIIP 426

[Close]
BLAST of Cp4.1LG01g07070 vs. TrEMBL
Match: B9HFC6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s13680g PE=4 SV=2)

HSP 1 Score: 144.1 bits (362), Expect = 9.5e-32
Identity = 64/100 (64.00%), Postives = 74/100 (74.00%), Query Frame = 1 

Query: 1   MPKLSALSLENNNFTGMIPVIYAFKTAAPNPGISPLERLLLGGNYLFGPIPEPLRRMKPD 60
           MPKLSALSLENN F+GMIP  +A KT  P  G+SP  RLLLGGNYL+GPIP PL  ++P 
Sbjct: 327 MPKLSALSLENNKFSGMIPTQFAIKTVLPGSGLSPFGRLLLGGNYLYGPIPGPLMELQPG 386

Query: 61  SATVRLGGNCLFRCPTFFFFCEGGEQKSTAVCRSAGPMIP 101
            A VRL  NCL+RCP  FFFC+GG+QKS   C+S  P IP
Sbjct: 387 FADVRLNDNCLYRCPVSFFFCQGGDQKSHMECKSFSPFIP 426

[Close]
BLAST of Cp4.1LG01g07070 vs. TAIR10
Match: AT5G66330.1 (AT5G66330.1 Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 120.9 bits (302), Expect = 4.4e-28
Identity = 54/99 (54.55%), Postives = 66/99 (66.67%), Query Frame = 1 

Query: 2   PKLSALSLENNNFTGMIPVIYAFKTAAPNPGISPLERLLLGGNYLFGPIPEPLRRMKPDS 61
           PKLSALSLENN F GMIP  Y +KT +P    +  +RLLLGGN+LFG +P PL  +KP S
Sbjct: 320 PKLSALSLENNKFFGMIPTQYVWKTVSPGSEFAGFQRLLLGGNFLFGVVPGPLMALKPGS 379

Query: 62  ATVRLGGNCLFRCPTFFFFCEGGEQKSTAVCRSAGPMIP 101
           A V+L GNC   CP   FFC+G EQ+S   CR    ++P
Sbjct: 380 ANVQLAGNCFSWCPATLFFCQGQEQRSPKECRKFSRVVP 418

[Close]
BLAST of Cp4.1LG01g07070 vs. NCBI nr
Match: gi|659107518|ref|XP_008453716.1| (PREDICTED: LRR receptor-like serine/threonine-protein kinase ERECTA [Cucumis melo])

HSP 1 Score: 190.7 bits (483), Expect = 1.3e-45
Identity = 86/100 (86.00%), Postives = 91/100 (91.00%), Query Frame = 1 

Query: 1   MPKLSALSLENNNFTGMIPVIYAFKTAAPNPGISPLERLLLGGNYLFGPIPEPLRRMKPD 60
           MPKLSALSLENNNFTGMIP++YAFKTAAP PGISP  RLLLGGNYLFGPIPEPLRRMKPD
Sbjct: 319 MPKLSALSLENNNFTGMIPILYAFKTAAPEPGISPFVRLLLGGNYLFGPIPEPLRRMKPD 378

Query: 61  SATVRLGGNCLFRCPTFFFFCEGGEQKSTAVCRSAGPMIP 101
           +ATVRL GNCLF CPT FFFC+GGEQKS   CRSAGP+IP
Sbjct: 379 TATVRLAGNCLFWCPTLFFFCQGGEQKSLVECRSAGPIIP 418

[Close]
BLAST of Cp4.1LG01g07070 vs. NCBI nr
Match: gi|449457496|ref|XP_004146484.1| (PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 1.2e-43
Identity = 84/100 (84.00%), Postives = 88/100 (88.00%), Query Frame = 1 

Query: 1   MPKLSALSLENNNFTGMIPVIYAFKTAAPNPGISPLERLLLGGNYLFGPIPEPLRRMKPD 60
           MPKLSALSLENNNFTGMIP++YAFKT AP PGISP  RLLLGGNYL GPIPEPLRRMK D
Sbjct: 318 MPKLSALSLENNNFTGMIPILYAFKTTAPEPGISPFVRLLLGGNYLSGPIPEPLRRMKAD 377

Query: 61  SATVRLGGNCLFRCPTFFFFCEGGEQKSTAVCRSAGPMIP 101
           SATVRL GNCLF CPT FFFC+GGEQKS   CRSAGP+IP
Sbjct: 378 SATVRLAGNCLFWCPTLFFFCQGGEQKSPVECRSAGPIIP 417

[Close]
BLAST of Cp4.1LG01g07070 vs. NCBI nr
Match: gi|694406892|ref|XP_009378217.1| (PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Pyrus x bretschneideri])

HSP 1 Score: 163.7 bits (413), Expect = 1.7e-37
Identity = 74/100 (74.00%), Postives = 80/100 (80.00%), Query Frame = 1 

Query: 1   MPKLSALSLENNNFTGMIPVIYAFKTAAPNPGISPLERLLLGGNYLFGPIPEPLRRMKPD 60
           MPKLSAL+LENN FTGMIP  YAFK A P PG+S  ERLLLGGNYLFGPIP PL R+KP 
Sbjct: 330 MPKLSALTLENNKFTGMIPTQYAFKVAVPGPGVSAFERLLLGGNYLFGPIPGPLLRLKPG 389

Query: 61  SATVRLGGNCLFRCPTFFFFCEGGEQKSTAVCRSAGPMIP 101
           SA V LG NCL+RCP  FFFC+GG+QKS   CRS GPMIP
Sbjct: 390 SANVGLGDNCLYRCPRVFFFCQGGDQKSFHACRSFGPMIP 429

[Close]
BLAST of Cp4.1LG01g07070 vs. NCBI nr
Match: gi|694421647|ref|XP_009338658.1| (PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Pyrus x bretschneideri])

HSP 1 Score: 162.9 bits (411), Expect = 2.8e-37
Identity = 74/100 (74.00%), Postives = 80/100 (80.00%), Query Frame = 1 

Query: 1   MPKLSALSLENNNFTGMIPVIYAFKTAAPNPGISPLERLLLGGNYLFGPIPEPLRRMKPD 60
           MPKLSAL+LENN FTGMIP  YAFK A P PG+S  ERLLLGGNYLFGPIP PL R+KP 
Sbjct: 330 MPKLSALTLENNKFTGMIPTQYAFKVAVPGPGVSAFERLLLGGNYLFGPIPGPLLRLKPG 389

Query: 61  SATVRLGGNCLFRCPTFFFFCEGGEQKSTAVCRSAGPMIP 101
           SA V LG NCL+RCP  FFFC+GG+QKS   CRS GPMIP
Sbjct: 390 SANVGLGDNCLYRCPRVFFFCQGGDQKSFHECRSFGPMIP 429

[Close]
BLAST of Cp4.1LG01g07070 vs. NCBI nr
Match: gi|658021800|ref|XP_008346303.1| (PREDICTED: receptor-like protein 12 [Malus domestica])

HSP 1 Score: 157.9 bits (398), Expect = 9.1e-36
Identity = 72/100 (72.00%), Postives = 78/100 (78.00%), Query Frame = 1 

Query: 1   MPKLSALSLENNNFTGMIPVIYAFKTAAPNPGISPLERLLLGGNYLFGPIPEPLRRMKPD 60
           MPKLSAL+LENN FTGMIP  YAFK A P  G+S  ERLLL GNYLFGPIP PL R+KP 
Sbjct: 330 MPKLSALTLENNKFTGMIPTQYAFKVAVPGSGVSAFERLLLSGNYLFGPIPGPLLRLKPG 389

Query: 61  SATVRLGGNCLFRCPTFFFFCEGGEQKSTAVCRSAGPMIP 101
           SA V LG NCL+RCP  FFFC+GG+QKS   CRS GPMIP
Sbjct: 390 SANVGLGDNCLYRCPRVFFFCQGGDQKSFHECRSXGPMIP 429

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g07070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g07070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXY8_CUCSA8.3e-4484.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G043880 PE=4 SV=1[more]
M5VQ43_PRUPE2.7e-3469.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006641mg PE=4 SV=1[more]
A5AN28_VITVI3.5e-3467.00Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g02840 PE=4 SV=... [more]
W9T0X6_9ROSA6.0e-3469.00Receptor-like protein 12 OS=Morus notabilis GN=L484_026730 PE=4 SV=1[more]
B9HFC6_POPTR9.5e-3264.00Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s13680g PE=4 SV=2[more]
BLAST of Cp4.1LG01g07070 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G66330.14.4e-2854.55 Leucine-rich repeat (LRR) family protein[more]
BLAST of Cp4.1LG01g07070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659107518|ref|XP_008453716.1|1.3e-4586.00PREDICTED: LRR receptor-like serine/threonine-protein kinase ERECTA [Cucumis mel... [more]
gi|449457496|ref|XP_004146484.1|1.2e-4384.00PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM... [more]
gi|694406892|ref|XP_009378217.1|1.7e-3774.00PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Pyrus x brets... [more]
gi|694421647|ref|XP_009338658.1|2.8e-3774.00PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Pyrus x brets... [more]
gi|658021800|ref|XP_008346303.1|9.1e-3672.00PREDICTED: receptor-like protein 12 [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g07070.1Cp4.1LG01g07070.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR27000FAMILY NOT NAMEDcoord: 1..98
score: 8.1
NoneNo IPR availablePANTHERPTHR27000:SF169LEUCINE-RICH REPEAT-CONTAINING PROTEINcoord: 1..98
score: 8.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g07070Wax gourdcpewgoB0510
Cp4.1LG01g07070Wax gourdcpewgoB0522
Cp4.1LG01g07070Cucurbita pepo (Zucchini)cpecpeB233
Cp4.1LG01g07070Cucurbita pepo (Zucchini)cpecpeB237
Cp4.1LG01g07070Cucumber (Gy14) v1cgycpeB0569
Cp4.1LG01g07070Cucurbita maxima (Rimu)cmacpeB350
Cp4.1LG01g07070Cucurbita maxima (Rimu)cmacpeB354
Cp4.1LG01g07070Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g07070Cucurbita maxima (Rimu)cmacpeB731
Cp4.1LG01g07070Cucurbita moschata (Rifu)cmocpeB316
Cp4.1LG01g07070Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g07070Cucurbita moschata (Rifu)cmocpeB684
Cp4.1LG01g07070Wild cucumber (PI 183967)cpecpiB397
Cp4.1LG01g07070Cucumber (Chinese Long) v2cpecuB400
Cp4.1LG01g07070Bottle gourd (USVL1VR-Ls)cpelsiB373
Cp4.1LG01g07070Watermelon (Charleston Gray)cpewcgB412
Cp4.1LG01g07070Watermelon (97103) v1cpewmB420
Cp4.1LG01g07070Melon (DHL92) v3.5.1cpemeB424
Cp4.1LG01g07070Cucumber (Gy14) v2cgybcpeB502
Cp4.1LG01g07070Melon (DHL92) v3.6.1cpemedB496
Cp4.1LG01g07070Silver-seed gourdcarcpeB1302
Cp4.1LG01g07070Silver-seed gourdcarcpeB1303
Cp4.1LG01g07070Silver-seed gourdcarcpeB1418
Cp4.1LG01g07070Cucumber (Chinese Long) v3cpecucB0497