Cp4.1LG01g06280 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG01g06280
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionT15D22.3
LocationCp4.1LG01 : 238789 .. 240575 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCTTTGTTCTTCCAGATATGGGGCTGTACTACGGAGCTAAAGAGGTCCTAAAGATTCAAAAGTTTCGAAGACTTGTGTCCTATACTGGATTCTATCTCTTCGTTTCCGTTTTGAGTTACGCTTATACAAGCAATACGTGAGTTTAGACATTGCTCTTTAATTTTGTCCACTTTTTTGTTCTCTAATTGTTGTTCGGGGTATTGCAGAACTAGAGCTGGGTATTCTCGAGGGGATCAATTTTATGCTTCTTACCCTGCTGGTACAGAGCTCTTGACAGACACTACGAAGGTTTTTGCGTTCTTTGATTTGGGCTTCATACTCTTTTGATGTTCACAACTCTTGTGCTAATTTTCATTTTGTTTGCTGTAGTTGTACAAAGCTGCTCTTGGGAATTGTTTTGAAATAGAAGAATGGGGTCCAATTGAATTCTGCGTCATGGCTAAACATTTTGAACGTCAAGGAAAATCGCCTTATGCATATCATTCTGTAAGTTTGCCTCGTCTTTTGGTTGTTCTCTTTCTAGTTTGGTACGTAATTATGATTCCTGCTGAGTGTTGAATTGTTTTGTATTACACTGATTTCTGGTCAGATTTTTAGTTCAGTTTAATGATTCCAATGTGGGAATTAGGAGAACAAATCATATGGAAGTTATGTAAGTGCATGAAACTCTGAAATTTGCTGCTTTGTTAAGAGTTAAGAAATGTTGTTAAGATGAAAGAATACCCTTTTATGAAGTCATTGATGACAATGAAATGAGGAGATTATGATAATTTATAGCCTTTGTTCTCTGTTCAACTAGGGAGAAAGATTTATAAAGCTCTATTGCCAGTTTGGAATTAGCTGGAGTGATTATAGTTGTATAGTTGTTCCATCTGTAGGTATACAAATTTTAAGATGCTGTCTAAATGAACTGTAGTCTAATTATGGGCATTAACTATTTCTGAAATGAAGGTCGAGCTATGCAACAAACCAAGGATATAACATGTTAGGATCACAATAACAAGAAAACATTAATAGAACTATATTGCAATATCAATAGAAATTACAATACCAATATAGTCTTTTGAGAGGGCTGTCCCCCAAAATTCCTGCACTAAGACAATGAAGCAAAAACATTTTCCCTTTTCTAAGAAAACCCTAACACCCGGATTTATGACCAATACACACCAGACTAATAACAAATACACCCCTTACTACCACTATATCCTTGCTTATATGCCCAGCTTGTTCCTTACAAGTACTCAAACTCACATGAACACTTGAAGAAAGCCATATATAAGATGGAACGAATATCATCACATGTTTCGGATCAGAAATGGAGCTTTTTCTGGTGCATATTTATCATATCCTCTAACTATGTTTGTGAGGCTGTACAAAATGGAAGTCCACATCCAGGGAATTACCACTATAGCTCATTTTTTGTTTAAATTCTGGCAGCAATACATGGCACATCTTCTGTCTCATGGACAACTTGATGGAAGTGGGTAGGAAAACACCAATCAACAACCAAAGAGCTTTGAGACTTTTTACTACCATGATGGGGCTGCGCACTTCAATACTAAAATTCTAATTTTTTTGAAATTGAAGCATTGTTGTAGGTTTGAGCATAGATAGCTCAATTGATCATGATTACACGAATAACTTCACTTATGGGTCTTAGGTTCGAATCATCGCCCCTTTGTTTGATTTGTATTATTCTTTGAATATATATGGATCGGCTGCTAGGCATTGTATGTTACTAATTATACGAGAACATAAATAAGACTTGATCTTCCCCTCTTCCATT

mRNA sequence

GTCTTTGTTCTTCCAGATATGGGGCTGTACTACGGAGCTAAAGAGGTCCTAAAGATTCAAAAGTTTCGAAGACTTGTGTCCTATACTGGATTCTATCTCTTCGTTTCCGTTTTGAGTTACGCTTATACAAGCAATACAACTAGAGCTGGGTATTCTCGAGGGGATCAATTTTATGCTTCTTACCCTGCTGGTACAGAGCTCTTGACAGACACTACGAAGTTGTACAAAGCTGCTCTTGGGAATTGTTTTGAAATAGAAGAATGGGGTCCAATTGAATTCTGCGTCATGGCTAAACATTTTGAACGTCAAGGAAAATCGCCTTATGCATATCATTCTCAATACATGGCACATCTTCTGTCTCATGGACAACTTGATGGAAGTGGGTAGGAAAACACCAATCAACAACCAAAGAGCTTTGAGACTTTTTACTACCATGATGGGGCTGCGCACTTCAATACTAAAATTCTAATTTTTTTGAAATTGAAGCATTGTTGTAGGTTTGAGCATAGATAGCTCAATTGATCATGATTACACGAATAACTTCACTTATGGGTCTTAGGTTCGAATCATCGCCCCTTTGTTTGATTTGTATTATTCTTTGAATATATATGGATCGGCTGCTAGGCATTGTATGTTACTAATTATACGAGAACATAAATAAGACTTGATCTTCCCCTCTTCCATT

Coding sequence (CDS)

GTCTTTGTTCTTCCAGATATGGGGCTGTACTACGGAGCTAAAGAGGTCCTAAAGATTCAAAAGTTTCGAAGACTTGTGTCCTATACTGGATTCTATCTCTTCGTTTCCGTTTTGAGTTACGCTTATACAAGCAATACAACTAGAGCTGGGTATTCTCGAGGGGATCAATTTTATGCTTCTTACCCTGCTGGTACAGAGCTCTTGACAGACACTACGAAGTTGTACAAAGCTGCTCTTGGGAATTGTTTTGAAATAGAAGAATGGGGTCCAATTGAATTCTGCGTCATGGCTAAACATTTTGAACGTCAAGGAAAATCGCCTTATGCATATCATTCTCAATACATGGCACATCTTCTGTCTCATGGACAACTTGATGGAAGTGGGTAG

Protein sequence

VFVLPDMGLYYGAKEVLKIQKFRRLVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTELLTDTTKLYKAALGNCFEIEEWGPIEFCVMAKHFERQGKSPYAYHSQYMAHLLSHGQLDGSG
BLAST of Cp4.1LG01g06280 vs. TrEMBL
Match: A0A0A0KPE6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G001030 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 1.7e-62
Identity = 115/122 (94.26%), Postives = 120/122 (98.36%), Query Frame = 1

Query: 7   MGLYYGAKEVLKIQKFRRLVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE 66
           M LYYGAKE+LKIQKFRR+VSYTGFYLF SVLSYAYTSNTTRAGYSRGDQFYASYPAGTE
Sbjct: 1   MRLYYGAKEILKIQKFRRIVSYTGFYLFASVLSYAYTSNTTRAGYSRGDQFYASYPAGTE 60

Query: 67  LLTDTTKLYKAALGNCFEIEEWGPIEFCVMAKHFERQGKSPYAYHSQYMAHLLSHGQLDG 126
           LLTDTTKLYKAALGNCFE+EEWGPIEFC+MAKHF+RQGKSPYAYHSQYMAHLLSHGQLDG
Sbjct: 61  LLTDTTKLYKAALGNCFELEEWGPIEFCIMAKHFDRQGKSPYAYHSQYMAHLLSHGQLDG 120

Query: 127 SG 129
           SG
Sbjct: 121 SG 122

BLAST of Cp4.1LG01g06280 vs. TrEMBL
Match: A0A067L0N5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04698 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 2.9e-57
Identity = 107/122 (87.70%), Postives = 115/122 (94.26%), Query Frame = 1

Query: 7   MGLYYGAKEVLKIQKFRRLVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE 66
           M LY G KE+LKIQKFRR+VSYTGFY FV+VLSYAYTSNTTRAGYSR DQFYASYPAGTE
Sbjct: 1   MMLYDGFKEILKIQKFRRIVSYTGFYCFVAVLSYAYTSNTTRAGYSRADQFYASYPAGTE 60

Query: 67  LLTDTTKLYKAALGNCFEIEEWGPIEFCVMAKHFERQGKSPYAYHSQYMAHLLSHGQLDG 126
           LLTDT KLYKAA+GNCFE E+WGPIEFC+MAKHF+RQGKSPYAYH+QYMAHLLSHGQLDG
Sbjct: 61  LLTDTAKLYKAAVGNCFESEDWGPIEFCIMAKHFDRQGKSPYAYHAQYMAHLLSHGQLDG 120

Query: 127 SG 129
           SG
Sbjct: 121 SG 122

BLAST of Cp4.1LG01g06280 vs. TrEMBL
Match: A0A0D2PKT4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G161400 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 3.8e-57
Identity = 106/117 (90.60%), Postives = 112/117 (95.73%), Query Frame = 1

Query: 12  GAKEVLKIQKFRRLVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTELLTDT 71
           G KE+LKIQKFRR+VSYTGFY FV+VLSYAYT+NTTRAGYSR DQFYASYPAGTELLTDT
Sbjct: 9   GVKEILKIQKFRRIVSYTGFYCFVAVLSYAYTNNTTRAGYSRADQFYASYPAGTELLTDT 68

Query: 72  TKLYKAALGNCFEIEEWGPIEFCVMAKHFERQGKSPYAYHSQYMAHLLSHGQLDGSG 129
            KLYKAALGNCFE EEWGPIEFC+MAKHF+RQGKSPYAYHSQYMAHLLSHGQLDGSG
Sbjct: 69  AKLYKAALGNCFESEEWGPIEFCIMAKHFDRQGKSPYAYHSQYMAHLLSHGQLDGSG 125

BLAST of Cp4.1LG01g06280 vs. TrEMBL
Match: A0A067FBC6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032809mg PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.1e-56
Identity = 105/122 (86.07%), Postives = 115/122 (94.26%), Query Frame = 1

Query: 7   MGLYYGAKEVLKIQKFRRLVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE 66
           M LY   KE+LKIQKFRR+VSYTGFY FV+VLSYAYT+NTTRAGYSRGDQFYASYPAGTE
Sbjct: 1   MMLYETCKEILKIQKFRRIVSYTGFYCFVAVLSYAYTNNTTRAGYSRGDQFYASYPAGTE 60

Query: 67  LLTDTTKLYKAALGNCFEIEEWGPIEFCVMAKHFERQGKSPYAYHSQYMAHLLSHGQLDG 126
           LLTDTTKLYKAALGNCFE EEWGPIE+C+MAKHFERQGK PYAYH++YMAH+LSHG+LDG
Sbjct: 61  LLTDTTKLYKAALGNCFESEEWGPIEYCIMAKHFERQGKDPYAYHAKYMAHVLSHGELDG 120

Query: 127 SG 129
           SG
Sbjct: 121 SG 122

BLAST of Cp4.1LG01g06280 vs. TrEMBL
Match: V4UBH4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017195mg PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.1e-56
Identity = 105/122 (86.07%), Postives = 115/122 (94.26%), Query Frame = 1

Query: 7   MGLYYGAKEVLKIQKFRRLVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE 66
           M LY   KE+LKIQKFRR+VSYTGFY FV+VLSYAYT+NTTRAGYSRGDQFYASYPAGTE
Sbjct: 1   MMLYETCKEILKIQKFRRIVSYTGFYCFVAVLSYAYTNNTTRAGYSRGDQFYASYPAGTE 60

Query: 67  LLTDTTKLYKAALGNCFEIEEWGPIEFCVMAKHFERQGKSPYAYHSQYMAHLLSHGQLDG 126
           LLTDTTKLYKAALGNCFE EEWGPIE+C+MAKHFERQGK PYAYH++YMAH+LSHG+LDG
Sbjct: 61  LLTDTTKLYKAALGNCFESEEWGPIEYCIMAKHFERQGKDPYAYHAKYMAHVLSHGELDG 120

Query: 127 SG 129
           SG
Sbjct: 121 SG 122

BLAST of Cp4.1LG01g06280 vs. TAIR10
Match: AT1G14990.2 (AT1G14990.2 unknown protein)

HSP 1 Score: 197.2 bits (500), Expect = 6.1e-51
Identity = 93/124 (75.00%), Postives = 103/124 (83.06%), Query Frame = 1

Query: 15  EVLKIQKFRRLVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTELLTDTTKL 74
           EV+KIQK RR VSY GFY F + L++ YT+NTTRAGYSRGDQFYASYPAGTELLTDT KL
Sbjct: 9   EVIKIQKLRRAVSYAGFYCFTAALTFFYTNNTTRAGYSRGDQFYASYPAGTELLTDTAKL 68

Query: 75  YKAALGNCFEIEEWGPIEFCVMAKHFERQGKSPYAYHS----------QYMAHLLSHGQL 129
           YKAALGNC+E E+WGP+EFC+MAKHF+RQGKSPY YHS          QYMAHLLS GQL
Sbjct: 69  YKAALGNCYESEDWGPVEFCIMAKHFDRQGKSPYVYHSVSFHKSRILMQYMAHLLSQGQL 128

BLAST of Cp4.1LG01g06280 vs. NCBI nr
Match: gi|449462808|ref|XP_004149132.1| (PREDICTED: uncharacterized protein LOC101204884 [Cucumis sativus])

HSP 1 Score: 246.5 bits (628), Expect = 2.5e-62
Identity = 115/122 (94.26%), Postives = 120/122 (98.36%), Query Frame = 1

Query: 7   MGLYYGAKEVLKIQKFRRLVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE 66
           M LYYGAKE+LKIQKFRR+VSYTGFYLF SVLSYAYTSNTTRAGYSRGDQFYASYPAGTE
Sbjct: 1   MRLYYGAKEILKIQKFRRIVSYTGFYLFASVLSYAYTSNTTRAGYSRGDQFYASYPAGTE 60

Query: 67  LLTDTTKLYKAALGNCFEIEEWGPIEFCVMAKHFERQGKSPYAYHSQYMAHLLSHGQLDG 126
           LLTDTTKLYKAALGNCFE+EEWGPIEFC+MAKHF+RQGKSPYAYHSQYMAHLLSHGQLDG
Sbjct: 61  LLTDTTKLYKAALGNCFELEEWGPIEFCIMAKHFDRQGKSPYAYHSQYMAHLLSHGQLDG 120

Query: 127 SG 129
           SG
Sbjct: 121 SG 122

BLAST of Cp4.1LG01g06280 vs. NCBI nr
Match: gi|659109500|ref|XP_008454751.1| (PREDICTED: uncharacterized protein LOC103495078 isoform X1 [Cucumis melo])

HSP 1 Score: 241.1 bits (614), Expect = 1.0e-60
Identity = 113/122 (92.62%), Postives = 118/122 (96.72%), Query Frame = 1

Query: 7   MGLYYGAKEVLKIQKFRRLVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE 66
           M LYYGAKE+LKIQKFRR+VSYTGFYLF SVLSYAY SNTTRAGYSRGDQFYASY AGTE
Sbjct: 1   MRLYYGAKEILKIQKFRRIVSYTGFYLFASVLSYAYASNTTRAGYSRGDQFYASYSAGTE 60

Query: 67  LLTDTTKLYKAALGNCFEIEEWGPIEFCVMAKHFERQGKSPYAYHSQYMAHLLSHGQLDG 126
           LLTDT+KLYKAALGNCFE+EEWGPIEFC+MAKHFERQGKSPYAYHSQYMAHLLSHGQLDG
Sbjct: 61  LLTDTSKLYKAALGNCFELEEWGPIEFCIMAKHFERQGKSPYAYHSQYMAHLLSHGQLDG 120

Query: 127 SG 129
           SG
Sbjct: 121 SG 122

BLAST of Cp4.1LG01g06280 vs. NCBI nr
Match: gi|802596388|ref|XP_012072220.1| (PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas])

HSP 1 Score: 229.2 bits (583), Expect = 4.1e-57
Identity = 107/122 (87.70%), Postives = 115/122 (94.26%), Query Frame = 1

Query: 7   MGLYYGAKEVLKIQKFRRLVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE 66
           M LY G KE+LKIQKFRR+VSYTGFY FV+VLSYAYTSNTTRAGYSR DQFYASYPAGTE
Sbjct: 1   MMLYDGFKEILKIQKFRRIVSYTGFYCFVAVLSYAYTSNTTRAGYSRADQFYASYPAGTE 60

Query: 67  LLTDTTKLYKAALGNCFEIEEWGPIEFCVMAKHFERQGKSPYAYHSQYMAHLLSHGQLDG 126
           LLTDT KLYKAA+GNCFE E+WGPIEFC+MAKHF+RQGKSPYAYH+QYMAHLLSHGQLDG
Sbjct: 61  LLTDTAKLYKAAVGNCFESEDWGPIEFCIMAKHFDRQGKSPYAYHAQYMAHLLSHGQLDG 120

Query: 127 SG 129
           SG
Sbjct: 121 SG 122

BLAST of Cp4.1LG01g06280 vs. NCBI nr
Match: gi|823158384|ref|XP_012479048.1| (PREDICTED: uncharacterized protein LOC105794428 [Gossypium raimondii])

HSP 1 Score: 228.8 bits (582), Expect = 5.4e-57
Identity = 106/117 (90.60%), Postives = 112/117 (95.73%), Query Frame = 1

Query: 12  GAKEVLKIQKFRRLVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTELLTDT 71
           G KE+LKIQKFRR+VSYTGFY FV+VLSYAYT+NTTRAGYSR DQFYASYPAGTELLTDT
Sbjct: 9   GVKEILKIQKFRRIVSYTGFYCFVAVLSYAYTNNTTRAGYSRADQFYASYPAGTELLTDT 68

Query: 72  TKLYKAALGNCFEIEEWGPIEFCVMAKHFERQGKSPYAYHSQYMAHLLSHGQLDGSG 129
            KLYKAALGNCFE EEWGPIEFC+MAKHF+RQGKSPYAYHSQYMAHLLSHGQLDGSG
Sbjct: 69  AKLYKAALGNCFESEEWGPIEFCIMAKHFDRQGKSPYAYHSQYMAHLLSHGQLDGSG 125

BLAST of Cp4.1LG01g06280 vs. NCBI nr
Match: gi|645276607|ref|XP_008243366.1| (PREDICTED: uncharacterized protein LOC103341597 [Prunus mume])

HSP 1 Score: 228.4 bits (581), Expect = 7.0e-57
Identity = 106/122 (86.89%), Postives = 114/122 (93.44%), Query Frame = 1

Query: 7   MGLYYGAKEVLKIQKFRRLVSYTGFYLFVSVLSYAYTSNTTRAGYSRGDQFYASYPAGTE 66
           M LY G KE+LKIQKFRR+VSY GFY F +VLSYAYTSNTTRAG+SRGDQFYASYPAGTE
Sbjct: 2   MRLYDGVKEILKIQKFRRIVSYAGFYCFTAVLSYAYTSNTTRAGFSRGDQFYASYPAGTE 61

Query: 67  LLTDTTKLYKAALGNCFEIEEWGPIEFCVMAKHFERQGKSPYAYHSQYMAHLLSHGQLDG 126
           LLTDT KLYKAALGNCFE EEWGPIE+C+MAKHFERQGK+PYAYH+QYMAHLLSHGQLDG
Sbjct: 62  LLTDTAKLYKAALGNCFENEEWGPIEYCIMAKHFERQGKTPYAYHAQYMAHLLSHGQLDG 121

Query: 127 SG 129
           SG
Sbjct: 122 SG 123

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KPE6_CUCSA1.7e-6294.26Uncharacterized protein OS=Cucumis sativus GN=Csa_5G001030 PE=4 SV=1[more]
A0A067L0N5_JATCU2.9e-5787.70Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04698 PE=4 SV=1[more]
A0A0D2PKT4_GOSRA3.8e-5790.60Uncharacterized protein OS=Gossypium raimondii GN=B456_005G161400 PE=4 SV=1[more]
A0A067FBC6_CITSI1.1e-5686.07Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032809mg PE=4 SV=1[more]
V4UBH4_9ROSI1.1e-5686.07Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017195mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G14990.26.1e-5175.00 unknown protein[more]
Match NameE-valueIdentityDescription
gi|449462808|ref|XP_004149132.1|2.5e-6294.26PREDICTED: uncharacterized protein LOC101204884 [Cucumis sativus][more]
gi|659109500|ref|XP_008454751.1|1.0e-6092.62PREDICTED: uncharacterized protein LOC103495078 isoform X1 [Cucumis melo][more]
gi|802596388|ref|XP_012072220.1|4.1e-5787.70PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas][more]
gi|823158384|ref|XP_012479048.1|5.4e-5790.60PREDICTED: uncharacterized protein LOC105794428 [Gossypium raimondii][more]
gi|645276607|ref|XP_008243366.1|7.0e-5786.89PREDICTED: uncharacterized protein LOC103341597 [Prunus mume][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g06280.1Cp4.1LG01g06280.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36712FAMILY NOT NAMEDcoord: 8..128
score: 2.1

The following gene(s) are paralogous to this gene:

None