BLAST of Cp4.1LG01g05850 vs. Swiss-Prot
Match:
RDR1_ARATH (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1)
HSP 1 Score: 1398.6 bits (3619), Expect = 0.0e+00
Identity = 707/1129 (62.62%), Postives = 849/1129 (75.20%), Query Frame = 1
Query: 1 MGKTVHISGFPSHATADSVKSFLELRTGLGTVYAIKVRPPKRGGSRVYAIVQFIGAAQAE 60
MGKT+ + GFP+ +A+ VK FLE TG GTVYAIKVR PK+GG RVYAIVQF
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60
Query: 61 LIISLANQRLWYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEKFHVLWEGD 120
LII+ A +RL+YG SYLKA + DIVPKPR +HT+ L + FGCQVS++KF LW
Sbjct: 61 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120
Query: 121 VELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAPRIY 180
V+FG+ MRK++F +YR +LSYENIWQI LH Q +S K L+IQ+ GAP+I+
Sbjct: 121 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIF 180
Query: 181 KKVAPSGGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSIGQSSSLCLKLPNGRQLPNFRR 240
+K +F + +F+ + D+QW+RT DFT S+ IGQS++ CL+LP +P+FR
Sbjct: 181 EKEDQPINLLFG--IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRE 240
Query: 241 HFAYYEEFEDEFKLVDGGNGVSCS-DDLVPVVDSRPNVLLPYEIIFKVNVLVQNGCIPGP 300
+FA Y E L++ G+ S + + LVPVVD P LP+EI+FK+N LVQN C+ GP
Sbjct: 241 NFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGP 300
Query: 301 SLETGFYRLVDPSRIRVEYVENALEKLFHLKECCYEPSSFLTEQYKKY---AKHPSNSPA 360
+L+ FYRL++ + +++ LEKLFHL ECCYEP+ +L ++YKK+ K P SP
Sbjct: 301 ALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPL-SPT 360
Query: 361 IALDAGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRST 420
I+LD GLVY+ RVQ+TP +VYF GPEVNVSNRVLRH+S+ ++NFLRVSFVDE+ +K+RS
Sbjct: 361 ISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSM 420
Query: 421 DLLPRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGL 480
DL PR ++ +T +Y RI SVL++GI IGDKKF+FLAFSSSQLRENS WMFA +
Sbjct: 421 DLSPRSSTQ---RRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRI 480
Query: 481 DAAVIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVGRHEREIIPDIEVQHGEVKYVF 540
AA IR WMGDF HI+N AKYAARLGQSF SS ETL+V E E+IPD+E+ +YVF
Sbjct: 481 TAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVF 540
Query: 541 SDGIGKISSDFAKRVASKCVLV-FTPSAFQIRYGGYKGVVAVDPRSSVKLSLRKSMCKFE 600
SDGIGKIS++FA++VA KC L F+PSAFQIRYGGYKGVVAVDP SS KLSLRKSM KFE
Sbjct: 541 SDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFE 600
Query: 601 SDNTKLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPLKAQE 660
S+NTKLDVL +SKYQPC++NRQLITLLSTLGV D VFEKKQ E +++LDAILT PL+A E
Sbjct: 601 SENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHE 660
Query: 661 ALELMSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNGRAMM 720
AL LM+PGENTNILK ++ CGYKPD EP+LSMMLQ FR SKLLELRTK+RIFI GR+MM
Sbjct: 661 ALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMM 720
Query: 721 GCLDETGTLEYGQVFVQISSARHRHISDTSAFDMSDSEDHLVIVGNVTVAKNPCLHPGDV 780
GCLDET TLEYGQV VQ S D +I G V VAKNPCLHPGDV
Sbjct: 721 GCLDETRTLEYGQVVVQYS-------------DPMRPGRRFIITGPVVVAKNPCLHPGDV 780
Query: 781 RVLNAVNVPLLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQIPPMD 840
RVL AVNVP L HMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD EL+PPR PMD
Sbjct: 781 RVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMD 840
Query: 841 YTPAPPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSAPCIELAKL 900
YTP P LD DVTIE+V+EYF NY+VNDSLGIIANAHTAFADKEP KA S PCIELAK
Sbjct: 841 YTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKK 900
Query: 901 FSIAVDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAVKGIAPNISYI 960
FS AVDFPKTGV A+IP HL VKE+PDFMEKPD+P+YESKNVIGKLFR VK AP + I
Sbjct: 901 FSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISI 960
Query: 961 RSFTRDVAMRCYDSDMEAEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKSESEIFSGNIM 1020
+SFT DVA + YD DME +GFE+YV++A Y K YD+KLGNL+DYYGIK+E+EI SG IM
Sbjct: 961 KSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIM 1020
Query: 1021 RMSKSFTRRRDAEAINLAARSLRKEARTWFNTKESGPDSGSDDLFAKASAWYHVTYHHSY 1080
RMSKSFT+RRDAE+I A R+LRKE + FN E ++ AKASAWYHVTYH SY
Sbjct: 1021 RMSKSFTKRRDAESIGRAVRALRKETLSLFNASEE-----EENESAKASAWYHVTYHSSY 1080
Query: 1081 WGSYNDGMKRDHYLSFPWCVYHKLMQVKENNLRRREKASRLATLDRFSR 1125
WG YN+G+ RDH+LSF WCVY KL+++K+ NL RR++ L LD R
Sbjct: 1081 WGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQRQETLERLDHVLR 1105
BLAST of Cp4.1LG01g05850 vs. Swiss-Prot
Match:
RDR1_ORYSJ (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 PE=2 SV=2)
HSP 1 Score: 961.8 bits (2485), Expect = 6.4e-279
Identity = 481/746 (64.48%), Postives = 586/746 (78.55%), Query Frame = 1
Query: 376 VYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRSTDLLPRMASSIENGKTDIYR 435
VYF GPE+NVSNRV+R+FS D++NFLR+SFVDE+ +K+R+TDL PR AS + +T +Y+
Sbjct: 9 VYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTALYK 68
Query: 436 RILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGLDAAVIREWMGDFRHIKNPA 495
R+LSVL +GI IG K F+FLAFSSSQLR+NS WMFASR GL A+ IR WMGDFR+I+N A
Sbjct: 69 RVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVA 128
Query: 496 KYAARLGQSFGSSTETLSVGRHEREIIPDIEVQHGEVKYVFSDGIGKISSDFAKRVASKC 555
KYAARLGQSF SSTETL V ++E E I DI+ ++VFSDGIGKISS FA VA KC
Sbjct: 129 KYAARLGQSFSSSTETLKVQKYEVEEISDIK---NGTQHVFSDGIGKISSAFANEVAMKC 188
Query: 556 VLV-FTPSAFQIRYGGYKGVVAVDPRSSVKLSLRKSMCKFESDNTKLDVLGYSKYQPCFL 615
L F PSAFQIRYGGYKGVVAVDP S KLSLRKSM KF+SDN +DVL YSKYQP FL
Sbjct: 189 NLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPGFL 248
Query: 616 NRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPLKAQEALELMSPGENTNILKEMLK 675
NRQLITLLSTLGV+D VFE+KQ EA+ QL+ ++TDP A EA+ELM GE TN +KE+L
Sbjct: 249 NRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELLL 308
Query: 676 CGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNGRAMMGCLDETGTLEYGQVFVQIS 735
CGY+PD EPYLSM+LQTFR SKLLEL+TKSRI IP GRAMMGCLDET TL+YGQVF++ +
Sbjct: 309 CGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIRAT 368
Query: 736 SARHRHISDTSAFDMSDSEDHLVIVGNVTVAKNPCLHPGDVRVLNAVNVPLLYHMVDCVV 795
S ++D D + G V +AKNPCLHPGD+R+L+AV+VP+L+HM +CVV
Sbjct: 369 SG----VNDN---------DRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVV 428
Query: 796 FPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQIPPMDYTPAPPIQLDRDVTIEDVQ 855
FPQ+G RPHPNECSGSDLDGDIYFV WD LIPPR + PMDYTPAP LD DVTIE+V+
Sbjct: 429 FPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVE 488
Query: 856 EYFVNYMVNDSLGIIANAHTAFADKEPFKARSAPCIELAKLFSIAVDFPKTGVPAIIPSH 915
EYF NY+VN+SLG+IANAH FADKE KA S+PCIELAKLFSIAVDFPKTGVPA+IP
Sbjct: 489 EYFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPE 548
Query: 916 LNVKEFPDFMEKPDRPSYESKNVIGKLFRAVKGIAPNISYIRSFTRDVAMRCYDSDMEAE 975
L+VKE+PDFMEK D+ +YESK VIGKL+R +K P +I+ FTR+VA R YD+DM +
Sbjct: 549 LHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTP---HIKHFTREVARRSYDTDMIVD 608
Query: 976 GFEDYVEDAIYHKTIYDYKLGNLLDYYGIKSESEIFSGNIMRMSKSFTRRRDAEAINLAA 1035
G+EDY+ +A+ K YD+KLGNL+D+YGIKSE+EI SG I++M+K+FT++ DA+AI LA
Sbjct: 609 GYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRLAV 668
Query: 1036 RSLRKEARTWFNTKESGPDS-GSDDLFAKASAWYHVTYHHSYWGSYNDGMKRDHYLSFPW 1095
RSLRKEAR+ F+ + G D AKASAWYHVTYH +WG YN+G +R H++SFPW
Sbjct: 669 RSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYERPHFISFPW 728
Query: 1096 CVYHKLMQVKENNLRRREKASRLATL 1120
C+Y KL+++K+ R+ L +L
Sbjct: 729 CIYEKLLRIKQRRKFVRKMQPELFSL 735
BLAST of Cp4.1LG01g05850 vs. Swiss-Prot
Match:
RDR2_ARATH (RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=1 SV=1)
HSP 1 Score: 773.5 bits (1996), Expect = 3.2e-222
Identity = 457/1149 (39.77%), Postives = 667/1149 (58.05%), Query Frame = 1
Query: 4 TVHISGFPSHATADSVKSFLELRTGLGTVYAIKVRPPKRGG--SRVYAIVQFIGA---AQ 63
TV IS P AD + FLEL G TV+A+++ P R R +A VQF ++
Sbjct: 11 TVKISNVPQTIVADELLRFLELHLGEDTVFALEI-PTTRDNWKPRDFARVQFTTLEVKSR 70
Query: 64 AELIISLANQRLWYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEK-FHVLW 123
A+L+ S +L + + L+ A DI+P+P L+D+ L G S EK F L
Sbjct: 71 AQLLSS--QSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALE 130
Query: 124 EGDVELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMK--CLLIQLYG 183
+ D E R++ F + + Y+ ++ +E+I + + + + L++L
Sbjct: 131 KWDGVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKY 190
Query: 184 APRIYKKVAPSGGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSIGQSSSLCLKLPNGRQL 243
P+++K+V F + F KE D W+RT DF+ S SIG S+ CL++ NG +
Sbjct: 191 GPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTM 250
Query: 244 PNFRRHFAYYEEFEDEFKLVDGGNGVSCSDDLVPVVDSRPNVL-LPYEIIFKVNVLVQNG 303
+ YY E VDG S + +VP++++ L PYEI+F++N LV
Sbjct: 251 LDIFSGLPYYREDTLSLTYVDGKTFASAAQ-IVPLLNAAILGLEFPYEILFQLNALVH-- 310
Query: 304 CIPGPSLETGFYRLVDPSRIRV------EYVENALEKLFHLKECCYEPSSFLTEQYKKYA 363
+ + + D I++ E L+KL CY+P F+ Q +
Sbjct: 311 -----AQKISLFAASDMELIKILRGMSLETALVILKKLHQQSSICYDPVFFVKTQMQSVV 370
Query: 364 KHPSNSPAIAL----DAGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVS 423
K +SPA A + ++ +R +TP K+Y GPE+ +N V+++F+ + +F+RV+
Sbjct: 371 KKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVT 430
Query: 424 FVDEEWDKMRSTDLLPRMASS--IENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQL 483
FV+E+W K+ + L ++ +T+IY R+LS+L GI +G K+F+FLAFS+SQL
Sbjct: 431 FVEEDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQL 490
Query: 484 RENSLWMFASRPGLDAAVIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVGRHEREII 543
R NS+WMFAS + A IREWMG FR I++ +K AAR+GQ F +S +TL V + E I
Sbjct: 491 RGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQI 550
Query: 544 PDIEVQHGEVKYVFSDGIGKISSDFAKRVASKCVLVFTPSAFQIRYGGYKGVVAVDPRSS 603
PDIEV Y FSDGIGKIS FAK+VA KC L PSAFQIRYGGYKGV+AVD S
Sbjct: 551 PDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSSF 610
Query: 604 VKLSLRKSMCKFESDNTKLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQ 663
KLSLR SM KF+S+N L+V +++ PCFLNR++I LLSTLG++D +FE Q+ L
Sbjct: 611 RKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSM 670
Query: 664 LDAILTDPLKAQEALELMSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRT 723
L +L D A L+ +S + N+L +ML GY P EPYLSMML+ ES+L EL++
Sbjct: 671 LGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKS 730
Query: 724 KSRIFIPNGRAMMGCLDETGTLEYGQVFVQISSARHRHISDTSAFDMSDSEDHLVIVGNV 783
+ RI +P GR ++GC+DE G LEYGQV+V+++ + S ++ E+ V++G V
Sbjct: 731 RCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKV 790
Query: 784 TVAKNPCLHPGDVRVLNAVNVPLLYH--MVDCVVFPQKGSRPHPNECSGSDLDGDIYFVC 843
V KNPCLHPGD+RVL+A+ +DC++FPQKG RPHPNECSG DLDGD +FV
Sbjct: 791 VVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVS 850
Query: 844 WDTELIPPRQIPPMDYTPAPPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKE 903
WD ++IP PPMDY + P +D DVT+E++ ++FV+YM++D+LG+I+ AH AD++
Sbjct: 851 WDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRD 910
Query: 904 PFKARSAPCIELAKLFSIAVDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGK 963
P KARS C+ELA L S AVDF KTG PA +P L +EFPDF+E+ ++P+Y S++V GK
Sbjct: 911 PEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGK 970
Query: 964 LFRAVKGIAPNISYIRSFTRDVAMRCYDSDMEAEGFEDYVEDAIYHKTIYDYKLGNLLDY 1023
L+RAVK +++ + YD +E GFE ++E A H+ +Y KL +L+ Y
Sbjct: 971 LYRAVKS---SLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIY 1030
Query: 1024 YGIKSESEIFSGNI----MRMSKSFTRRRD-AEAINLAARSLRKEARTWFNTKESGPDSG 1083
YG +E EI +G + M +++ R D + I L+ + L KEA WF S
Sbjct: 1031 YGAANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFE------KSC 1090
Query: 1084 SDDLFAK--ASAWYHVTYHHSYWGSYNDGMKRDHYLSFPWCVYHKLMQVKENNLRRR--- 1120
D+ K ASAWY+VTY+ N ++ +LSFPW V L+ +K N +R+
Sbjct: 1091 EDEQQKKKLASAWYYVTYNP------NHRDEKLTFLSFPWIVGDVLLDIKAENAQRQSVE 1133
BLAST of Cp4.1LG01g05850 vs. Swiss-Prot
Match:
RDR2_ORYSJ (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica GN=RDR2 PE=2 SV=1)
HSP 1 Score: 762.3 bits (1967), Expect = 7.5e-219
Identity = 440/1133 (38.83%), Postives = 650/1133 (57.37%), Query Frame = 1
Query: 4 TVHISGFPSHATADSVKSFLELRTGL-GTVYAIKVRPPKRGG-SRVYAIVQFIGAAQAEL 63
++ +S P A A + +F + + G +A ++ RG SR + VQF AA A
Sbjct: 11 SLRVSNIPPSAVAAELLAFFDSAVAVAGGAFACEIAAAHRGWLSRGHGTVQFGSAAAAAA 70
Query: 64 IISLANQ-RL-WYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEKFHVL--W 123
LA+ RL + + L + VD++P+ L G +V+ F W
Sbjct: 71 AAGLASSGRLPRFLGALLSVSPSPVDLLPRASDLSLRAAGAGLVVGDRVAERVFEAADAW 130
Query: 124 EGDVELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAP 183
+G V G R+++ +L H+ Y+ ++ +E++ L M +L+QL AP
Sbjct: 131 DGVRAEVIPG--KRRVDLYLEHDSQRYKLEVLFEDMKDCLGCTLD--GMGAILLQLNYAP 190
Query: 184 RIYKKVA-PSGGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSIGQSSSLCLKLPNGRQLP 243
RI+ ++ P+ F D F+ KE WVR DFTP+ S G+ S+L LKL +
Sbjct: 191 RIHTAISGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLGKSALVS 250
Query: 244 NFRRHFAYYEEFEDEFKLVDGGNGVSCSDDLVPVVDSRPNVLLPYEIIFKVNVLVQNGCI 303
+ + + + ++ +GV S ++VP+V + +PYE++F++N L+ G I
Sbjct: 251 DILKSLPFSGNLGE--LTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLNSLMHMGKI 310
Query: 304 PGPSLETGFYRLVDPSRIRVEYVENALEKLFHLKECCYEPSSFLTEQ-YKKYAKHP---S 363
+ ++ + + V+ EK+ L+ CY P F+ ++ Y H S
Sbjct: 311 VAKHVNADLFKALQ--ELPVDVSRRIFEKMHKLESTCYGPLQFIQQEAYSMKRSHNVLLS 370
Query: 364 NSPAIALDAGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDK 423
N + L+ RV ITP K++ GPE V+N V++H S +F+RV+FVDE+W K
Sbjct: 371 NEGEGEGERKLMKCYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSK 430
Query: 424 MRSTDLLPRMASSIENG--KTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMF 483
+ S + R+ + KT +Y RILS+LK G +IG K F+FLAFS+SQLR NS+WMF
Sbjct: 431 LSSNAISARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMF 490
Query: 484 ASRPGLDAAVIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVGRHEREIIPDIEVQHG 543
AS L+A IR WMG F +I++ +K AAR+GQ F SS +T V R + E+IPDIE+
Sbjct: 491 ASNASLNAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITTD 550
Query: 544 EVKYVFSDGIGKISSDFAKRVASKCVLVFT--PSAFQIRYGGYKGVVAVDPRSSVKLSLR 603
KY+FSDGIGKIS FAKRVA L T PSAFQIRYGGYKGV+A+DP SS+ LSLR
Sbjct: 551 GSKYIFSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSLR 610
Query: 604 KSMCKFESDNTKLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAILT 663
SM KFES++ L++ +SK QPC++NR++I+LLSTLG++DE+F Q + + + + +LT
Sbjct: 611 PSMKKFESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLT 670
Query: 664 DPLKAQEALELMSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFI 723
+ A L + E +K +L+ GY+P EPYLSM+L+ +E++L ++RT+ +I +
Sbjct: 671 NKEVALSVLGKLGGSETKTAVKMLLQ-GYEPSSEPYLSMILKAHQENRLTDIRTRCKIHV 730
Query: 724 PNGRAMMGCLDETGTLEYGQVFVQISSARHRHISDTSAFDMSDSEDHLVIVGNVTVAKNP 783
P GR ++GCLDETG LEYGQV+++I+ ++ +D +VG V + KNP
Sbjct: 731 PKGRVLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAITKNP 790
Query: 784 CLHPGDVRVLNAVNVPLLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPP 843
CLHPGD+RVL A+ P L MVDC+VFPQ+G RPHPNECSG DLDGD+YF+ WD +LIP
Sbjct: 791 CLHPGDIRVLEAIYDPDLVGMVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPE 850
Query: 844 RQIPPMDYTPAPPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSAP 903
+ PMDYT P +D VT+E++Q++FV+YM+NDSLG I+ AH AD+ P KARS
Sbjct: 851 KVDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPE 910
Query: 904 CIELAKLFSIAVDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAVKGI 963
C++LA L S+AVDF KTG PA +P L +E+PDFME+ ++P Y S V+GKL+R+ G
Sbjct: 911 CLQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGH 970
Query: 964 APNISYIRSFTRDVAM--RCYDSDMEAEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKSE 1023
+ + A YD D+E G +++++ A + +Y+ KL L++YY + E
Sbjct: 971 MEKSGDSGALSSSSAQPSPTYDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAELE 1030
Query: 1024 SEIFSGNIMRMSKSFTRRRD-------AEAINLAARSLRKEARTWFNTKESGPDSGSDDL 1083
EI +GNI +K +RD + I A +L +EAR W + +D
Sbjct: 1031 DEILTGNI--RNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWLLSSRK-----EEDA 1090
Query: 1084 FAKASAWYHVTYHHSYWGSYNDGMKRDHYLSFPWCVYHKLMQVKENNLRRREK 1113
ASAWY VTYH D + + SFPW L+ +K ++ RR +
Sbjct: 1091 SRMASAWYRVTYH-------PDRRRGKRFWSFPWIACDNLLAIKASSQLRRRR 1120
BLAST of Cp4.1LG01g05850 vs. Swiss-Prot
Match:
SHL2_ORYSJ (Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica GN=SHL2 PE=2 SV=1)
HSP 1 Score: 582.8 bits (1501), Expect = 8.1e-165
Identity = 378/999 (37.84%), Postives = 546/999 (54.65%), Query Frame = 1
Query: 143 EYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAPRIYKKVAPSGGQIFDDPL-FNFFKE 202
+ + + ++ +++L+RL LL++L AP ++ + A F +P+ F+ +
Sbjct: 214 DVKLEFPVRDVLEVRLYRLDCS----LLLRLAAAPLVHYRTADDD---FHEPVPFDLLDD 273
Query: 203 VPDDQWVRTADFTPSNSIGQSSSLCLKLPNGRQLPNFRRHFAYYEEFEDEFKLVDGG--- 262
DD W+RT D TPS +IG+ + + R P R Y E GG
Sbjct: 274 --DDPWIRTTDITPSGAIGRCGVYRISF-SARFWPKMDRALDYMRERRVAIVDCGGGWGP 333
Query: 263 -NGVSCSDDLV---PVVDS----RPNVLLPYEIIFKVNVLVQNGCIPGPSLETGFYRLVD 322
G++ D+L P+ D + L + ++F VN LV G I L F+ L+
Sbjct: 334 RRGLTVRDELEFGEPMQDVFFCLQHAEGLKFPLLFMVNALVHKGIINQHQLTPEFFSLLG 393
Query: 323 PSRIRVEYVENALEKLFHLKECCYEPSSFLTEQYKKYAKHPSNSPAIALDAGLVYVRRVQ 382
S V AL + K ++ L + + A++P + D VRR+
Sbjct: 394 RSEENVNVA--ALRDFWGDKFPVFDACGRLKKALNRVARNPKLLCSKVGDDH-AEVRRLV 453
Query: 383 ITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRSTDL-------LPRMA 442
ITP + Y PEV SNRVLRH+ D FLRV+F+DE + + L + +
Sbjct: 454 ITPTRAYCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQVLNNNVLNSFTAPIVKDLM 513
Query: 443 SSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGLDAAVIRE 502
S+ KT +Y+R+ +L G + +K+ FLAFSS+QLR+ S W FA IR+
Sbjct: 514 SNFFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTVEAIRK 573
Query: 503 WMGDFRHIKNPAKYAARLGQSFGSSTETLSVGRHEREIIPDIEVQHGEVKYVFSDGIGKI 562
WMG F KN AK+AAR+GQ F S+ T+++ E + D +V H E Y+FSDGIGKI
Sbjct: 574 WMGRFTS-KNVAKHAARMGQCFSSTYATVTMRPDEVDESFD-DVVHNE--YIFSDGIGKI 633
Query: 563 SSDFAKRVASKCVLVFTP-SAFQIRYGGYKGVVAV--DPRSSVKLSLRKSMCKFESDNTK 622
+ D A VA + L P SA+QIR+ G+KGV+AV +L LR SM KFES++
Sbjct: 634 TPDLALEVAERLQLTDNPPSAYQIRFAGFKGVIAVWQGHGDGTRLFLRPSMRKFESNHLV 693
Query: 623 LDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPLKAQEALELM 682
L+V+ ++K+QP FLNRQ+I LLS+L V D +F + Q L L+ IL+D A E L
Sbjct: 694 LEVVSWTKFQPGFLNRQIIILLSSLNVPDSIFWQMQETMLSNLNNILSDRDVAFEVLTT- 753
Query: 683 SPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNGRAMMGCLDE 742
S ++ N ML G++P EP+L ML R ++L +L K+RIF+P GR +MGCLDE
Sbjct: 754 SCADDGNTAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCLDE 813
Query: 743 TGTLEYGQVFVQ--ISSARHRHISDTSAFDMSDSEDHLVIVGNVTVAKNPCLHPGDVRVL 802
G LE GQ F++ + S + S F +D VI+G V +AKNPCLHPGDVR+L
Sbjct: 814 LGVLEQGQCFIRATVPSLNSYFVKHGSRFSSTDKNTE-VILGTVVIAKNPCLHPGDVRIL 873
Query: 803 NAVNVPLLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPP--RQIPPMDY 862
AV+VP L+H+VDC+VFPQKG RPH NE SGSDLDGD+YFV WD +LIPP + PMDY
Sbjct: 874 EAVDVPELHHLVDCLVFPQKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDY 933
Query: 863 TPAPPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSAPCIELAKLF 922
+P QL R V+ D+ ++F+ M++++LG I NAH AD + A CI LA+L
Sbjct: 934 SPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKCIHLAELA 993
Query: 923 SIAVDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAVKGIAPNISYIR 982
+ AVDFPKTG AI+P HL K +PDFM K D SY+S+ ++G+L+R+++ A N +
Sbjct: 994 ATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSIQE-ASNGDVVS 1053
Query: 983 SFTRDVAMRCYDSDMEAEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKSESEIFSGNIMR 1042
YD D+E G D++ A K YD +L LL Y +++E+E+ +G+I
Sbjct: 1054 QEVCTPNDLPYDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHITF 1113
Query: 1043 MSKSFTRRRD--AEAINLAARSLRKEARTWFNTKESGPDSGSDD-----LFAKASAWYHV 1102
+ K+ ++++ + + A +LRKE ++ F + S DD KASAWY V
Sbjct: 1114 LVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASAWYQV 1173
Query: 1103 TYHHSYWGSYN-----DGMKRDHYLSFPWCVYHKLMQVK 1104
TYH + DG + LSF W L ++K
Sbjct: 1174 TYHPKWVEKSRGILGPDGEEIPASLSFAWIPVDYLARIK 1192
BLAST of Cp4.1LG01g05850 vs. TrEMBL
Match:
A0A0S1YD00_CUCME (RNA-dependent RNA polymerase 1a OS=Cucumis melo GN=RDR1a PE=2 SV=1)
HSP 1 Score: 1911.3 bits (4950), Expect = 0.0e+00
Identity = 937/1131 (82.85%), Postives = 1018/1131 (90.01%), Query Frame = 1
Query: 1 MGKTVHISGFPSHATADSVKSFLELRTGLGTVYAIKVRPPKRGGSRVYAIVQFIGAAQAE 60
MGKT+HISGFPSH TAD+VK+FLE TG GTVYAIKVRPPKRGG R+YAIVQF A QAE
Sbjct: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
Query: 61 LIISLANQRLWYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEKFHVLWEGD 120
LI+SLANQRLWYGSSYLKAR+ +VDIVPKP+TY++TL+DL LCFGCQVSSEKF VLWEG+
Sbjct: 61 LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYTLKDLLLCFGCQVSSEKFRVLWEGN 120
Query: 121 VELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAPRIY 180
V+LVTFG+ MRKMNFHL +N VEYR +LSYENIWQIQLH Q QSMK LLIQLYGAPRIY
Sbjct: 121 VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQLYGAPRIY 180
Query: 181 KKVAPSGGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSIGQSSSLCLKLPNGRQLPNFRR 240
KKVAPS GQIFD+P+ NFF EVPDDQWVRT DFT S SIGQSSSLCLKLPNG +LP F++
Sbjct: 181 KKVAPSSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240
Query: 241 HFAYYEEFEDEFKLVDGGNGVSCSDDLVPVVDSRPNVLLPYEIIFKVNVLVQNGCIPGPS 300
+FAYYEEFE EF+L+D G S DL P+VDSRP+VL PYEIIFK+N LVQ+GCIP
Sbjct: 241 NFAYYEEFEHEFRLIDEGASFSFCRDLAPIVDSRPHVL-PYEIIFKINALVQHGCIPWSL 300
Query: 301 LETGFYRLVDPS-RIRVEYVENALEKLFHLKECCYEPSSFLTEQYKKYAKHPSNSPAIAL 360
L+T FYRLV+ IR+E+VE+ALEKLFHLKEC Y+PS+FLTEQ+++Y++HP NSP I+L
Sbjct: 301 LDTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISL 360
Query: 361 DAGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRSTDLL 420
D GLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFS+ +DNFLRVSFVDEEWDKMRSTDLL
Sbjct: 361 DDGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLL 420
Query: 421 PRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGLDAA 480
PRM+S E+ KTDIYRRILSVLKNGI IGDK F+FLAFSSSQLR+NSLWMFAS P +DAA
Sbjct: 421 PRMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAA 480
Query: 481 VIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVGRHEREIIPDIEVQHGEVKYVFSDG 540
IR WMGDFRHIKNPAKYAARLGQSFGSSTE LSV +EREIIPDIEVQHGEVKYVFSDG
Sbjct: 481 YIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDG 540
Query: 541 IGKISSDFAKRVASKCVLVFTPSAFQIRYGGYKGVVAVDPRSSVKLSLRKSMCKFESDNT 600
IGKISS FAK VA+KC PSAFQIRYGGYKGVVAVDP S++KLSLRKSMCKFESDN
Sbjct: 541 IGKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNI 600
Query: 601 KLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPLKAQEALEL 660
KLDVLG+SKYQPCFLNRQLITLLSTLGV+DE+FEKKQSEA+EQLDAILTDPLKAQEALEL
Sbjct: 601 KLDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALEL 660
Query: 661 MSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNGRAMMGCLD 720
MSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFR SKLLELRTKSRIFIPNGRAMMGCLD
Sbjct: 661 MSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLD 720
Query: 721 ETGTLEYGQVFVQISSARHRHISDTSAFDMSDSEDHLVIVGNVTVAKNPCLHPGDVRVLN 780
ET TLEYGQVFVQIS RHR++S++ AF+ S E LVI G VTVAKNPCLHPGDVRVL
Sbjct: 721 ETMTLEYGQVFVQISGGRHRNLSESFAFN-SGQEHCLVIEGKVTVAKNPCLHPGDVRVLK 780
Query: 781 AVNVPLLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQIPPMDYTPA 840
AVNVP LYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPR+I PMDYTPA
Sbjct: 781 AVNVPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRRITPMDYTPA 840
Query: 841 PPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSAPCIELAKLFSIA 900
PI+LDRDVT ED+QEYFVNYMVNDSLGIIANAHTAFADKEPFKARS+PC+ELAK FSIA
Sbjct: 841 LPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFSIA 900
Query: 901 VDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAVKGIAPNISYIRSFT 960
VDFPKTGVPAIIPSHL VKEFPDFMEKPDRPSYESKNVIGKLFRAVK IAP +S+I+ FT
Sbjct: 901 VDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQPFT 960
Query: 961 RDVAMRCYDSDMEAEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKSESEIFSGNIMRMSK 1020
RDVA RCYD DME EGFEDYVEDA YHK+ YD KLGNLLDYYGIKSE+EI SG+IMRMSK
Sbjct: 961 RDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRMSK 1020
Query: 1021 SFTRRRDAEAINLAARSLRKEARTWFNTKESGPDSGSDDLFAKASAWYHVTYHHSYWGSY 1080
SFTRRRDAEAINLA RSLRKEARTWFN +E G DS SDDLFAKASAWY+VTYHHSYWG Y
Sbjct: 1021 SFTRRRDAEAINLAVRSLRKEARTWFNARE-GADSNSDDLFAKASAWYYVTYHHSYWGYY 1080
Query: 1081 NDGMKRDHYLSFPWCVYHKLMQVKENNLRRREKASRLATLDRFSRALNLDG 1131
N+GMKRD+YLSFPWC+Y KLMQ+KENNLR+RE+A+RLAT DRF LNL G
Sbjct: 1081 NEGMKRDYYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGYVLNLGG 1128
BLAST of Cp4.1LG01g05850 vs. TrEMBL
Match:
E9NWK6_CUCSA (RNA-dependent RNA polymerase 1a OS=Cucumis sativus GN=RDR1a PE=2 SV=1)
HSP 1 Score: 1908.3 bits (4942), Expect = 0.0e+00
Identity = 933/1131 (82.49%), Postives = 1014/1131 (89.66%), Query Frame = 1
Query: 1 MGKTVHISGFPSHATADSVKSFLELRTGLGTVYAIKVRPPKRGGSRVYAIVQFIGAAQAE 60
MGKT+HISGFPSH TAD+VK+FLE TG GTVYAIKVRPPKRGG R+YAIVQF A QAE
Sbjct: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
Query: 61 LIISLANQRLWYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEKFHVLWEGD 120
LIISLANQRLWYGSSYLKARA +VDIVPKPRTY++TLE+L LCFGCQVS+EKF VLWEG+
Sbjct: 61 LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
Query: 121 VELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAPRIY 180
V+LVTFG+ MRKMNFHL + VEYR +LSYE IWQIQLH + QSMK LLIQL GAPRIY
Sbjct: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
Query: 181 KKVAPSGGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSIGQSSSLCLKLPNGRQLPNFRR 240
KKVAP+ GQIFD+PL NFFKE DDQWVRT DFT S SIGQSSSLCLKLPNGRQLP F++
Sbjct: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
Query: 241 HFAYYEEFEDEFKLVDGGNGVSCSDDLVPVVDSRPNVLLPYEIIFKVNVLVQNGCIPGPS 300
+FAYYEEFE EF+L+D S DL P+VDSR +VL PY+I+FK+N LVQ GCIP P
Sbjct: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVL-PYKILFKINALVQYGCIPWPL 300
Query: 301 LETGFYRLVDPS-RIRVEYVENALEKLFHLKECCYEPSSFLTEQYKKYAKHPSNSPAIAL 360
L+ FYRLV+ R+E+VE+ALEKLFHLKEC Y+PS+FLTEQY+KY++HP NSP I+L
Sbjct: 301 LDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISL 360
Query: 361 DAGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRSTDLL 420
D GLVYVRRVQITPCKV+FCGPEVNVSNRVLRHFS+ +DNFLRVSFVDEEWDKMRSTDLL
Sbjct: 361 DDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLL 420
Query: 421 PRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGLDAA 480
PRM+S E+GKTDIYRRILSVLKNGI IGDK F+FLAFSSSQLR+NSLWMFAS P +DAA
Sbjct: 421 PRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAA 480
Query: 481 VIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVGRHEREIIPDIEVQHGEVKYVFSDG 540
IR WMGDFRHIKNPAKYAARLGQSFGSSTE LSV +EREIIPDIEVQ GE+KYVFSDG
Sbjct: 481 YIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDG 540
Query: 541 IGKISSDFAKRVASKCVLVFTPSAFQIRYGGYKGVVAVDPRSSVKLSLRKSMCKFESDNT 600
IGKISS FAK VA+KC PSAFQIRYGGYKGVVAVDP S++KLSLRKSMCKFESDNT
Sbjct: 541 IGKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNT 600
Query: 601 KLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPLKAQEALEL 660
KLDVLG+SKYQPCFLNRQLITL+STLGV+DE+FEKKQSEA+EQLDAILTDPLKAQEALEL
Sbjct: 601 KLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALEL 660
Query: 661 MSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNGRAMMGCLD 720
MSPGENTNILKEMLKCGY+PDVEPYLSMMLQTFR SKLLELRTKSRIFIPNGRAMMGCLD
Sbjct: 661 MSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLD 720
Query: 721 ETGTLEYGQVFVQISSARHRHISDTSAFDMSDSEDHLVIVGNVTVAKNPCLHPGDVRVLN 780
ET TLEYGQVFVQISS RHR++S++ AF+ E HLVI GNVTVAKNPCLHPGDVRVL
Sbjct: 721 ETRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLK 780
Query: 781 AVNVPLLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQIPPMDYTPA 840
AVN+P LYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIP RQIPPMDYTPA
Sbjct: 781 AVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPA 840
Query: 841 PPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSAPCIELAKLFSIA 900
PP +LDRDVT ED+QEYFVNYMVNDSLGIIANAHTAFADKE FKARS+PC+ELAKLFS+A
Sbjct: 841 PPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVA 900
Query: 901 VDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAVKGIAPNISYIRSFT 960
VDFPKTGVPAIIPSHL VKEFPDFMEKPDRPSYES VIGKLFRAVK IAP +S+IRSFT
Sbjct: 901 VDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFT 960
Query: 961 RDVAMRCYDSDMEAEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKSESEIFSGNIMRMSK 1020
RDVA RCYD DME EGFEDYVEDA YHK+ YDYKLGNLLDYYGIKSE+E+ SG+IMRMSK
Sbjct: 961 RDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSK 1020
Query: 1021 SFTRRRDAEAINLAARSLRKEARTWFNTKESGPDSGSDDLFAKASAWYHVTYHHSYWGSY 1080
SFTRRRDAEAINLA RSLRKEARTWFN +E G DS SDDLFAKASAWY+VTYHHSYWG Y
Sbjct: 1021 SFTRRRDAEAINLAVRSLRKEARTWFNARE-GADSNSDDLFAKASAWYYVTYHHSYWGCY 1080
Query: 1081 NDGMKRDHYLSFPWCVYHKLMQVKENNLRRREKASRLATLDRFSRALNLDG 1131
N+GMKRDHYLSFPWCVY KLMQ+KENNLRRRE+A+RLA+ DRF LNL G
Sbjct: 1081 NEGMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLGG 1129
BLAST of Cp4.1LG01g05850 vs. TrEMBL
Match:
B9HJH7_POPTR (RNA-directed RNA Polymerase family protein OS=Populus trichocarpa GN=POPTR_0008s13550g PE=4 SV=1)
HSP 1 Score: 1573.9 bits (4074), Expect = 0.0e+00
Identity = 773/1133 (68.23%), Postives = 914/1133 (80.67%), Query Frame = 1
Query: 1 MGKTVHISGFPSHATADSVKSFLELRTGLGTVYAIKVRPPKRGGSRVYAIVQFIGAAQAE 60
M KTV +SGFPS TA +V+ FLE TG GTV A+K+R + GG+R YAIVQF AE
Sbjct: 1 MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGARKYAIVQFTTTRAAE 60
Query: 61 LIISLANQRLWYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEKFHVLWEGD 120
IISLAN RLWYG SYL AR D DI+P+PR+++HT+E +TL FG Q S EKF +W G+
Sbjct: 61 QIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWSGN 120
Query: 121 VELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAPRIY 180
V FG+ MRK++F L HN EY+ L +ENIWQI+LHR + Q++K LLIQLYGAPRIY
Sbjct: 121 NVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRIY 180
Query: 181 KKVAPSGGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSIGQSSSLCLKLPNGRQLPNFRR 240
++ PS +F+DPL N+F++VPD+QWVRT DFTPS IG SSSLCL+LPN QLPNF
Sbjct: 181 ERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNFNE 240
Query: 241 HFAYYEEFEDEFKLVDGGNGVSCSDDLVPVVDSRPNVLLPYEIIFKVNVLVQNGCIPGPS 300
+F YY+E E F L + G S + DLVP+V V LPY I+F+VN+LVQNGC+ G
Sbjct: 241 NFFYYKENEGTFVL-ESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSM 300
Query: 301 LETGFYRLVDPSRIRVEYVENALEKLFHLKECCYEPSSFLTEQYKKY--AKHPSNSPAIA 360
L+ FYRLVDP+R+ V +E ALEKL+HLKECCYEPS + EQYKKY + +P SP ++
Sbjct: 301 LDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVLS 360
Query: 361 LDAGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRSTDL 420
LDAGLVYV +VQITPCKV+FCGPEVNVSNRVLR + D+DNFLRVSFVDEE +K+ STD+
Sbjct: 361 LDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTDV 420
Query: 421 LPRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGLDA 480
PR +S E +T IY RILS L+NGI IGDKKF+FLAFSSSQLRENS WMFASR GL A
Sbjct: 421 SPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTA 480
Query: 481 AVIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVGRHEREIIPDIEVQHGEVKYVFSD 540
A IR WMG F I+N A+YAARLGQSFGSSTETLSV HE EIIPDIEV G +Y+FSD
Sbjct: 481 ADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLFSD 540
Query: 541 GIGKISSDFAKRVASKCVLV-FTPSAFQIRYGGYKGVVAVDPRSSVKLSLRKSMCKFESD 600
GIGKIS++FA++VA KC FTPSAFQIRY GYKGVVAVDP SS KLSLR+SM K+ES+
Sbjct: 541 GIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYESE 600
Query: 601 NTKLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPLKAQEAL 660
NTKLDVL +SKYQPCFLNRQLITLLSTLGV D FE+KQ EA++QLDA+LTDPL+AQEAL
Sbjct: 601 NTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEAL 660
Query: 661 ELMSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNGRAMMGC 720
ELMSPGENTNILKEML CGY+PD EP+LSMMLQTFR SKLLELRTK+RIFIPNGR+MMGC
Sbjct: 661 ELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGC 720
Query: 721 LDETGTLEYGQVFVQISSARHRHISDTS-AFDMSDSEDHLVIVGNVTVAKNPCLHPGDVR 780
LDET TLE+GQVFV+ S +R R++ D+S F +I G+V VAKNPCLHPGD+R
Sbjct: 721 LDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLHPGDLR 780
Query: 781 VLNAVNVPLLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQIPPMDY 840
+L AV+VP L+HMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD ELIP +QI PMDY
Sbjct: 781 ILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQISPMDY 840
Query: 841 TPAPPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSAPCIELAKLF 900
TP PP+QLD DVTIE+V+EYF NY+VNDSLG+IANAHTA ADKE KA S PC+ELA+ F
Sbjct: 841 TPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVELARKF 900
Query: 901 SIAVDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAVKGIAPNISYIR 960
SIAVDFPKTGVPA IPS+L +E+PDFMEKPD+PSYES+NVIGKLFR VK IAP S IR
Sbjct: 901 SIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIR 960
Query: 961 SFTRDVAMRCYDSDMEAEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKSESEIFSGNIMR 1020
SFT DVA +CYD DME +GFEDY++DA Y+K+ YDYKLGNL++YYGIK+E+E+ SG+ M+
Sbjct: 961 SFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSFMK 1020
Query: 1021 MSKSFTRRRDAEAINLAARSLRKEARTWFNTKESGPDSGSDDLFAKASAWYHVTYHHSYW 1080
MSKSFT++RDAEAI +A RSL+KEAR+WFN K SG DS +DD+ AKASAWYHVTYHH+YW
Sbjct: 1021 MSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHNYW 1080
Query: 1081 GSYNDGMKRDHYLSFPWCVYHKLMQVKENNLRRREKASRLATLDR-FSRALNL 1129
G YN+GM RDH+LSFPWCVY KL+Q+K N R ++ L +++R FSR L+L
Sbjct: 1081 GCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLILPSVERQFSRGLHL 1132
BLAST of Cp4.1LG01g05850 vs. TrEMBL
Match:
A0A061EGF4_THECC (RNA-dependent RNA polymerase 1 isoform 1 OS=Theobroma cacao GN=TCM_011292 PE=4 SV=1)
HSP 1 Score: 1540.4 bits (3987), Expect = 0.0e+00
Identity = 773/1132 (68.29%), Postives = 909/1132 (80.30%), Query Frame = 1
Query: 1 MGKTVHISGFPSHATADSVKSFLELRTGLGTVYAIKVRPPKRGGSRVYAIVQFIGAAQAE 60
MGKT+ +S FPS+ A+ VK+FLEL TG TVYA+K+R K GG R YAIVQF + AE
Sbjct: 1 MGKTIQVSRFPSNVHAEEVKTFLELYTGKETVYALKIRQQKNGG-RAYAIVQFTKSTDAE 60
Query: 61 LIISLANQRLWYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEKFHVLWEGD 120
LII L NQRL+YGSSYLKAR + DIVPKPRT++HT+E +TL FGCQVS+EKF+VLWE
Sbjct: 61 LIIRLTNQRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWEEV 120
Query: 121 VELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAPRIY 180
V FG+ MRK+ F L H+ VEYR L YENIWQI+LHR ++Q+ K LLIQL+GAPRIY
Sbjct: 121 DVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPRIY 180
Query: 181 KKVAPSGGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSIGQSSSLCLKLPNGRQLPNFRR 240
+K S G +F++PL N+F +VPDDQWVRT DFT S+ IGQSS LCL+LP QLPNFR
Sbjct: 181 EKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLPNFRE 240
Query: 241 HFAYYEEFEDEFKLVDGGNGVSCSDDLVPVVDSRPNVLLPYEIIFKVNVLVQNGCIPGPS 300
+FAYY+E E +F L + G+ S + +LVP+V + LPYEI+FK+N+LVQNGCIPGP+
Sbjct: 241 NFAYYKESEGKFVL-ESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPGPA 300
Query: 301 LETGFYRLVDPSRIRVEYVENALEKLFHLKECCYEPSSFLTEQYKKYAKHPSN--SPAIA 360
L+ FYRLV+P RI Y+++ALEKL++LKECC+EPS +L EQYK Y N SP I+
Sbjct: 301 LDANFYRLVNPCRIDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPVIS 360
Query: 361 LDAGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRSTDL 420
LD GLV VRRVQITP +VYFCGPE+NVSNRVLRHF D+DNFLR++FVDEE +K+ STDL
Sbjct: 361 LDDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHSTDL 420
Query: 421 LPRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGLDA 480
L R N T+IY RILS LKNGI IGDK+F+FLAFSSSQLRENS WMFASR GL A
Sbjct: 421 LTR------NRITEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASREGLTA 480
Query: 481 AVIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVGRHEREIIPDIEVQHGEVKYVFSD 540
A IR WMG+F I+N AKYAARLGQSF SSTETLSV + E EII D+E++ + YVFSD
Sbjct: 481 ADIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKRDGINYVFSD 540
Query: 541 GIGKISSDFAKRVASKCVLVF-TPSAFQIRYGGYKGVVAVDPRSSVKLSLRKSMCKFESD 600
GIGKIS+ FAK+VA+KC L TPSAFQIR GG+KGVVAVDP SS KLSLR SM K+ES+
Sbjct: 541 GIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMSKYESE 600
Query: 601 NTKLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPLKAQEAL 660
NTKLDVL +SKYQPCFLNRQLITLLSTLGV D FE+KQ E ++QL+AILTDPLKAQEAL
Sbjct: 601 NTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLKAQEAL 660
Query: 661 ELMSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNGRAMMGC 720
ELMSPGENTNILKEML CGY+PD EP+LSMMLQTFR SKLLELRTKSRIF+ NGR+MMGC
Sbjct: 661 ELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGRSMMGC 720
Query: 721 LDETGTLEYGQVFVQISSARHRHISDTSAFDMSDSEDHLVIVGNVTVAKNPCLHPGDVRV 780
LDET TL+YGQVFVQ+S +R SE ++ G V VAKNPCLHPGDVRV
Sbjct: 721 LDETRTLDYGQVFVQVSGSR--------------SEQRFIVQGKVVVAKNPCLHPGDVRV 780
Query: 781 LNAVNVPLLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQIPPMDYT 840
L AVNVP L+HMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWD ELIP +QIPPMDY+
Sbjct: 781 LTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSKQIPPMDYS 840
Query: 841 PAPPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSAPCIELAKLFS 900
PAP L+ +VTIE+V+EYF NY+VNDSLGIIANAHT FAD+EP KA S+ C LAKLFS
Sbjct: 841 PAPTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPRKAMSSECKWLAKLFS 900
Query: 901 IAVDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAVKGIAPNISYIRS 960
IAVDFPKTGVPA IP L VKE+PDFMEKPD+P+Y+S NVIGKLFR VK +APN +IRS
Sbjct: 901 IAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPTYQSYNVIGKLFREVKDLAPNECFIRS 960
Query: 961 FTRDVAMRCYDSDMEAEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKSESEIFSGNIMRM 1020
TR+ R YD DME +G+EDYV+DA YHK+ YDYKLGNL++YYGIK+E+EI SG IM+M
Sbjct: 961 LTRERLERFYDPDMEVDGYEDYVDDAFYHKSNYDYKLGNLMEYYGIKTEAEILSGGIMKM 1020
Query: 1021 SKSFTRRRDAEAINLAARSLRKEARTWFNTKESGPDSGSDDLFAKASAWYHVTYHHSYWG 1080
S+SFT++RDAEAI +A RSLRKEAR+WFN K +G DS +DDL+AKASAWYHVTYH SYWG
Sbjct: 1021 SRSFTKQRDAEAIGVAVRSLRKEARSWFNEKGNGLDSEADDLYAKASAWYHVTYHPSYWG 1080
Query: 1081 SYNDGMKRDHYLSFPWCVYHKLMQVKENNLRRREKASRLATLDR-FSRALNL 1129
YN+GM R+H+LSFPWCVY KL+ +K+ RR SRL++L+ F+R L L
Sbjct: 1081 LYNEGMNRNHFLSFPWCVYDKLILIKKKVTSRRN--SRLSSLESLFARGLRL 1108
BLAST of Cp4.1LG01g05850 vs. TrEMBL
Match:
W9RFK1_9ROSA (RNA-dependent RNA polymerase 1 OS=Morus notabilis GN=L484_006779 PE=4 SV=1)
HSP 1 Score: 1526.5 bits (3951), Expect = 0.0e+00
Identity = 759/1134 (66.93%), Postives = 906/1134 (79.89%), Query Frame = 1
Query: 1 MGKTVHISGFPSHATADSVKSFLELRTGLGTVYAIKVRPPKRGGSRVYAIVQFIGAAQAE 60
MGKT+ +SGFPSH +A+SVK FLE TG GTVYAIK+RP K GGSR YAIVQF+ AE
Sbjct: 1 MGKTIQLSGFPSHVSAESVKEFLEGHTGRGTVYAIKIRPTKNGGSRSYAIVQFMTVETAE 60
Query: 61 LIISLANQRLWYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEKFHVLWEGD 120
LII LAN RLWYG SYL AR + DIVPKPR +++L+++TL FGCQ+S EKF LW
Sbjct: 61 LIIRLANPRLWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWRVG 120
Query: 121 VELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAPRIY 180
V FG+ +R++NF+L + VEYR QL YEN+WQI+LHR + Q+ K LLIQL GAPR+Y
Sbjct: 121 NVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQTAKYLLIQLLGAPRVY 180
Query: 181 KKVAPSGGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSIGQSSSLCLKLPNGRQLPNFRR 240
+K I ++PLFN+FK+ PDDQWVR DFT S IG SS+L L+LP G LP+ R
Sbjct: 181 EKEVRISFDILENPLFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVDLPDLRE 240
Query: 241 HFAYYEEFEDEFKLVDGGNGVSCSDDLVPVVDSRPNVLLPYEIIFKVNVLVQNGCIPGPS 300
+F YY+E E+ F +++ G+ S + DLVP+V + LP+E +FK+N+L+QNGC+ GP+
Sbjct: 241 NFVYYKESEERF-ILESGSSFSRNLDLVPIVGPPSGINLPFETVFKINMLLQNGCLSGPT 300
Query: 301 LETGFYRLVDPSRIR-VEYVENALEKLFHLKECCYEPSSFLTEQYKKY--AKHPSNSPAI 360
L+ FYRLVDP RIR V+ + ALEKLF+LKEC YEP+++L EQY+KY A P PAI
Sbjct: 301 LDVDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPRPPKPPAI 360
Query: 361 ALDAGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRSTD 420
ALD+GLVYVRRVQ+TP KVYFCGPE+NVSNRVLR + +D FLRVSFVDEE +K+ STD
Sbjct: 361 ALDSGLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEELEKLFSTD 420
Query: 421 LLPRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGLD 480
L PR +++ E+ +T IYRRILSVL+NGI IGD+KF+FLAFSSSQLR+NSLWMFA+ G
Sbjct: 421 LSPRTSNANEDRRTGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMFAAVDGHS 480
Query: 481 AAVIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVGRHEREIIPDIEVQHGEVKYVFS 540
A IR+W+GDFR I+N AKYAARLGQSFGSSTETL+V E E+I DIE++ G VKYVFS
Sbjct: 481 ADTIRQWIGDFRSIRNVAKYAARLGQSFGSSTETLTVDESETEVISDIEIERGAVKYVFS 540
Query: 541 DGIGKISSDFAKRVASKCVLV-FTPSAFQIRYGGYKGVVAVDPRSSVKLSLRKSMCKFES 600
DGIGKISS FAKRVA KC L PSAFQIRY GYKGVVAVDP SS KLSLRKSM K+ES
Sbjct: 541 DGIGKISSTFAKRVAKKCGLKDCVPSAFQIRYCGYKGVVAVDPTSSTKLSLRKSMWKYES 600
Query: 601 DNTKLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPLKAQEA 660
+ KLDVL YSK Q C+LNRQLITLLSTLGV D VFEKKQ EA++QL+AIL DPL+A+EA
Sbjct: 601 ELHKLDVLAYSKLQHCYLNRQLITLLSTLGVGDRVFEKKQREAVQQLNAILNDPLRAREA 660
Query: 661 LELMSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNGRAMMG 720
L+LMS GE TNILKE+L CGY+P+ EP+LSMMLQ FR SKL ELRTK+RI IP+GRAMMG
Sbjct: 661 LDLMSAGETTNILKELLSCGYQPNAEPFLSMMLQAFRASKLQELRTKTRISIPDGRAMMG 720
Query: 721 CLDETGTLEYGQVFVQISSARHR-HISDTSAFDMSDSEDHLVIVGNVTVAKNPCLHPGDV 780
CLDE TLEYG+VFVQ S HR D+ + S + ++VG V VAKNPCLHPGDV
Sbjct: 721 CLDEMRTLEYGEVFVQFSGITHRPFFEDSFMLGGTGSGQNYIVVGRVVVAKNPCLHPGDV 780
Query: 781 RVLNAVNVPLLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQIPPMD 840
RVL AVNVP L+HMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWD ELIP +Q PMD
Sbjct: 781 RVLRAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDDELIPQKQFEPMD 840
Query: 841 YTPAPPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSAPCIELAKL 900
Y+PAP +LD DV IE+VQEYF NY+VNDSLGIIANAHTAFADKEP KA S CIELA+L
Sbjct: 841 YSPAPTTRLDHDVRIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPSKAMSPSCIELARL 900
Query: 901 FSIAVDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAVKGIAPNISYI 960
FSIAVDFPKTGVPA+IP L VKE+PDFMEK ++P+YES+NVIGKLFR VK IAPN+ +
Sbjct: 901 FSIAVDFPKTGVPAVIPQELYVKEYPDFMEKLNKPTYESQNVIGKLFREVKDIAPNVGSL 960
Query: 961 RSFTRDVAMRCYDSDMEAEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKSESEIFSGNIM 1020
FT++VA R YD DME +GFEDY++DA Y+K+ YDYKLGNLLDYYGIKSE+EI G+IM
Sbjct: 961 HFFTKEVASRSYDPDMEYDGFEDYIDDAFYYKSNYDYKLGNLLDYYGIKSEAEIIGGSIM 1020
Query: 1021 RMSKSFTRRRDAEAINLAARSLRKEARTWFNTKESGPDSGSDDLFAKASAWYHVTYHHSY 1080
RMSKSFT+RRDAE+IN+A R+LRKEARTWFN K S DS +DD++AKASAWY+VTYHHSY
Sbjct: 1021 RMSKSFTKRRDAESINMAVRALRKEARTWFNEKGSSLDSAADDVYAKASAWYYVTYHHSY 1080
Query: 1081 WGSYNDGMKRDHYLSFPWCVYHKLMQVKENNLRRREKASRLATLDR-FSRALNL 1129
WG YN+GM RDHYLSFPWCVY KL+Q+K + R ++ ++++L+R F R L+L
Sbjct: 1081 WGCYNEGMNRDHYLSFPWCVYDKLVQIKRSKASVR-RSLQMSSLERAFDRRLHL 1132
BLAST of Cp4.1LG01g05850 vs. TAIR10
Match:
AT1G14790.1 (AT1G14790.1 RNA-dependent RNA polymerase 1)
HSP 1 Score: 1398.6 bits (3619), Expect = 0.0e+00
Identity = 707/1129 (62.62%), Postives = 849/1129 (75.20%), Query Frame = 1
Query: 1 MGKTVHISGFPSHATADSVKSFLELRTGLGTVYAIKVRPPKRGGSRVYAIVQFIGAAQAE 60
MGKT+ + GFP+ +A+ VK FLE TG GTVYAIKVR PK+GG RVYAIVQF
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60
Query: 61 LIISLANQRLWYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEKFHVLWEGD 120
LII+ A +RL+YG SYLKA + DIVPKPR +HT+ L + FGCQVS++KF LW
Sbjct: 61 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120
Query: 121 VELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAPRIY 180
V+FG+ MRK++F +YR +LSYENIWQI LH Q +S K L+IQ+ GAP+I+
Sbjct: 121 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIF 180
Query: 181 KKVAPSGGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSIGQSSSLCLKLPNGRQLPNFRR 240
+K +F + +F+ + D+QW+RT DFT S+ IGQS++ CL+LP +P+FR
Sbjct: 181 EKEDQPINLLFG--IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRE 240
Query: 241 HFAYYEEFEDEFKLVDGGNGVSCS-DDLVPVVDSRPNVLLPYEIIFKVNVLVQNGCIPGP 300
+FA Y E L++ G+ S + + LVPVVD P LP+EI+FK+N LVQN C+ GP
Sbjct: 241 NFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGP 300
Query: 301 SLETGFYRLVDPSRIRVEYVENALEKLFHLKECCYEPSSFLTEQYKKY---AKHPSNSPA 360
+L+ FYRL++ + +++ LEKLFHL ECCYEP+ +L ++YKK+ K P SP
Sbjct: 301 ALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPL-SPT 360
Query: 361 IALDAGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRST 420
I+LD GLVY+ RVQ+TP +VYF GPEVNVSNRVLRH+S+ ++NFLRVSFVDE+ +K+RS
Sbjct: 361 ISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSM 420
Query: 421 DLLPRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGL 480
DL PR ++ +T +Y RI SVL++GI IGDKKF+FLAFSSSQLRENS WMFA +
Sbjct: 421 DLSPRSSTQ---RRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRI 480
Query: 481 DAAVIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVGRHEREIIPDIEVQHGEVKYVF 540
AA IR WMGDF HI+N AKYAARLGQSF SS ETL+V E E+IPD+E+ +YVF
Sbjct: 481 TAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVF 540
Query: 541 SDGIGKISSDFAKRVASKCVLV-FTPSAFQIRYGGYKGVVAVDPRSSVKLSLRKSMCKFE 600
SDGIGKIS++FA++VA KC L F+PSAFQIRYGGYKGVVAVDP SS KLSLRKSM KFE
Sbjct: 541 SDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFE 600
Query: 601 SDNTKLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPLKAQE 660
S+NTKLDVL +SKYQPC++NRQLITLLSTLGV D VFEKKQ E +++LDAILT PL+A E
Sbjct: 601 SENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHE 660
Query: 661 ALELMSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNGRAMM 720
AL LM+PGENTNILK ++ CGYKPD EP+LSMMLQ FR SKLLELRTK+RIFI GR+MM
Sbjct: 661 ALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMM 720
Query: 721 GCLDETGTLEYGQVFVQISSARHRHISDTSAFDMSDSEDHLVIVGNVTVAKNPCLHPGDV 780
GCLDET TLEYGQV VQ S D +I G V VAKNPCLHPGDV
Sbjct: 721 GCLDETRTLEYGQVVVQYS-------------DPMRPGRRFIITGPVVVAKNPCLHPGDV 780
Query: 781 RVLNAVNVPLLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQIPPMD 840
RVL AVNVP L HMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD EL+PPR PMD
Sbjct: 781 RVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMD 840
Query: 841 YTPAPPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSAPCIELAKL 900
YTP P LD DVTIE+V+EYF NY+VNDSLGIIANAHTAFADKEP KA S PCIELAK
Sbjct: 841 YTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKK 900
Query: 901 FSIAVDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAVKGIAPNISYI 960
FS AVDFPKTGV A+IP HL VKE+PDFMEKPD+P+YESKNVIGKLFR VK AP + I
Sbjct: 901 FSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISI 960
Query: 961 RSFTRDVAMRCYDSDMEAEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKSESEIFSGNIM 1020
+SFT DVA + YD DME +GFE+YV++A Y K YD+KLGNL+DYYGIK+E+EI SG IM
Sbjct: 961 KSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIM 1020
Query: 1021 RMSKSFTRRRDAEAINLAARSLRKEARTWFNTKESGPDSGSDDLFAKASAWYHVTYHHSY 1080
RMSKSFT+RRDAE+I A R+LRKE + FN E ++ AKASAWYHVTYH SY
Sbjct: 1021 RMSKSFTKRRDAESIGRAVRALRKETLSLFNASEE-----EENESAKASAWYHVTYHSSY 1080
Query: 1081 WGSYNDGMKRDHYLSFPWCVYHKLMQVKENNLRRREKASRLATLDRFSR 1125
WG YN+G+ RDH+LSF WCVY KL+++K+ NL RR++ L LD R
Sbjct: 1081 WGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQRQETLERLDHVLR 1105
BLAST of Cp4.1LG01g05850 vs. TAIR10
Match:
AT4G11130.1 (AT4G11130.1 RNA-dependent RNA polymerase 2)
HSP 1 Score: 773.5 bits (1996), Expect = 1.8e-223
Identity = 457/1149 (39.77%), Postives = 667/1149 (58.05%), Query Frame = 1
Query: 4 TVHISGFPSHATADSVKSFLELRTGLGTVYAIKVRPPKRGG--SRVYAIVQFIGA---AQ 63
TV IS P AD + FLEL G TV+A+++ P R R +A VQF ++
Sbjct: 11 TVKISNVPQTIVADELLRFLELHLGEDTVFALEI-PTTRDNWKPRDFARVQFTTLEVKSR 70
Query: 64 AELIISLANQRLWYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEK-FHVLW 123
A+L+ S +L + + L+ A DI+P+P L+D+ L G S EK F L
Sbjct: 71 AQLLSS--QSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALE 130
Query: 124 EGDVELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMK--CLLIQLYG 183
+ D E R++ F + + Y+ ++ +E+I + + + + L++L
Sbjct: 131 KWDGVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKY 190
Query: 184 APRIYKKVAPSGGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSIGQSSSLCLKLPNGRQL 243
P+++K+V F + F KE D W+RT DF+ S SIG S+ CL++ NG +
Sbjct: 191 GPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTM 250
Query: 244 PNFRRHFAYYEEFEDEFKLVDGGNGVSCSDDLVPVVDSRPNVL-LPYEIIFKVNVLVQNG 303
+ YY E VDG S + +VP++++ L PYEI+F++N LV
Sbjct: 251 LDIFSGLPYYREDTLSLTYVDGKTFASAAQ-IVPLLNAAILGLEFPYEILFQLNALVH-- 310
Query: 304 CIPGPSLETGFYRLVDPSRIRV------EYVENALEKLFHLKECCYEPSSFLTEQYKKYA 363
+ + + D I++ E L+KL CY+P F+ Q +
Sbjct: 311 -----AQKISLFAASDMELIKILRGMSLETALVILKKLHQQSSICYDPVFFVKTQMQSVV 370
Query: 364 KHPSNSPAIAL----DAGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVS 423
K +SPA A + ++ +R +TP K+Y GPE+ +N V+++F+ + +F+RV+
Sbjct: 371 KKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVT 430
Query: 424 FVDEEWDKMRSTDLLPRMASS--IENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQL 483
FV+E+W K+ + L ++ +T+IY R+LS+L GI +G K+F+FLAFS+SQL
Sbjct: 431 FVEEDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQL 490
Query: 484 RENSLWMFASRPGLDAAVIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVGRHEREII 543
R NS+WMFAS + A IREWMG FR I++ +K AAR+GQ F +S +TL V + E I
Sbjct: 491 RGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQI 550
Query: 544 PDIEVQHGEVKYVFSDGIGKISSDFAKRVASKCVLVFTPSAFQIRYGGYKGVVAVDPRSS 603
PDIEV Y FSDGIGKIS FAK+VA KC L PSAFQIRYGGYKGV+AVD S
Sbjct: 551 PDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSSF 610
Query: 604 VKLSLRKSMCKFESDNTKLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQ 663
KLSLR SM KF+S+N L+V +++ PCFLNR++I LLSTLG++D +FE Q+ L
Sbjct: 611 RKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSM 670
Query: 664 LDAILTDPLKAQEALELMSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRT 723
L +L D A L+ +S + N+L +ML GY P EPYLSMML+ ES+L EL++
Sbjct: 671 LGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKS 730
Query: 724 KSRIFIPNGRAMMGCLDETGTLEYGQVFVQISSARHRHISDTSAFDMSDSEDHLVIVGNV 783
+ RI +P GR ++GC+DE G LEYGQV+V+++ + S ++ E+ V++G V
Sbjct: 731 RCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKV 790
Query: 784 TVAKNPCLHPGDVRVLNAVNVPLLYH--MVDCVVFPQKGSRPHPNECSGSDLDGDIYFVC 843
V KNPCLHPGD+RVL+A+ +DC++FPQKG RPHPNECSG DLDGD +FV
Sbjct: 791 VVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVS 850
Query: 844 WDTELIPPRQIPPMDYTPAPPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKE 903
WD ++IP PPMDY + P +D DVT+E++ ++FV+YM++D+LG+I+ AH AD++
Sbjct: 851 WDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRD 910
Query: 904 PFKARSAPCIELAKLFSIAVDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGK 963
P KARS C+ELA L S AVDF KTG PA +P L +EFPDF+E+ ++P+Y S++V GK
Sbjct: 911 PEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGK 970
Query: 964 LFRAVKGIAPNISYIRSFTRDVAMRCYDSDMEAEGFEDYVEDAIYHKTIYDYKLGNLLDY 1023
L+RAVK +++ + YD +E GFE ++E A H+ +Y KL +L+ Y
Sbjct: 971 LYRAVKS---SLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIY 1030
Query: 1024 YGIKSESEIFSGNI----MRMSKSFTRRRD-AEAINLAARSLRKEARTWFNTKESGPDSG 1083
YG +E EI +G + M +++ R D + I L+ + L KEA WF S
Sbjct: 1031 YGAANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFE------KSC 1090
Query: 1084 SDDLFAK--ASAWYHVTYHHSYWGSYNDGMKRDHYLSFPWCVYHKLMQVKENNLRRR--- 1120
D+ K ASAWY+VTY+ N ++ +LSFPW V L+ +K N +R+
Sbjct: 1091 EDEQQKKKLASAWYYVTYNP------NHRDEKLTFLSFPWIVGDVLLDIKAENAQRQSVE 1133
BLAST of Cp4.1LG01g05850 vs. TAIR10
Match:
AT3G49500.1 (AT3G49500.1 RNA-dependent RNA polymerase 6)
HSP 1 Score: 576.6 bits (1485), Expect = 3.3e-164
Identity = 380/1035 (36.71%), Postives = 547/1035 (52.85%), Query Frame = 1
Query: 143 EYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAPRIYKKVAPSG------GQIFDDPLF 202
+Y+ +L +I ++ ++ H + L++QL +PR++ + A G + DD
Sbjct: 192 DYKLELLVRDIQTVRQYKTLHGFV--LILQLASSPRVWYRTADDDIYDTVPGDLLDD--- 251
Query: 203 NFFKEVPDDQWVRTADFTPSNSIGQSSSLCLKL----------------------PNGRQ 262
DD W+RT DFT +IG+ S + + R
Sbjct: 252 -------DDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRW 311
Query: 263 LPNFRRHFAYYEEFEDEFKLVDGGNGVSCSDDLVPVVDSRPNVLLPYEIIFKVNVLVQNG 322
P R + E D F + G+S +EI+F VN ++ G
Sbjct: 312 PPRIRNEPCFGEPVSDHFFCIHHKEGIS------------------FEIMFLVNSVLHRG 371
Query: 323 CIPGPSLETGFYRLVDPSRIRVEYVENALEKLFHLKECCYEPSSFLTEQYKK-------Y 382
L F+ L +R + + + L HL C Y+ F + YK+
Sbjct: 372 VFNQFQLTERFFDL-----LRNQPKDVNIASLKHL--CTYKRPVF--DAYKRLKLVQEWI 431
Query: 383 AKHPSNSPAIALDAGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVD 442
K+P + + +RR+ ITP + Y PEV +SNRVLR + + FLRV+F+D
Sbjct: 432 QKNPKLLGSHEQSEDISEIRRLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMD 491
Query: 443 EEWDKMRS-------TDLLPRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSS 502
E + S ++ + SS + KT +++R+ S+L +G + +K+ FLAFS++
Sbjct: 492 ESMQTINSNVLSYFVAPIVKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSAN 551
Query: 503 QLRENSLWMFASRPGLDAAVIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVGRHERE 562
QLR+ S W FA + I+ WMG F+ KN AK AAR+G F S+ T+ V HE +
Sbjct: 552 QLRDRSAWFFAEDGKTRVSDIKTWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVD 611
Query: 563 I-IPDIEVQHGEVKYVFSDGIGKISSDFAKRVASKCVL--VFTPSAFQIRYGGYKGVVAV 622
+PDIE ++G YVFSDGIG I+ D A V K L ++P A+QIRY G+KGVVA
Sbjct: 612 TEVPDIE-RNG---YVFSDGIGTITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVAR 671
Query: 623 DPRSS--VKLSLRKSMCKFESDNTKLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKK 682
P S ++L+LR SM KF S +T L++ ++++QP FLNRQ+ITLLS LGV DE+F
Sbjct: 672 WPSKSDGIRLALRDSMKKFFSKHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDM 731
Query: 683 QSEALEQLDAILTDPLKAQEALELMSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRES 742
Q L +L+ IL D A E L S E N ML G+KP EP+L ML + R +
Sbjct: 732 QESMLYKLNRILDDTDVAFEVL-TASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIA 791
Query: 743 KLLELRTKSRIFIPNGRAMMGCLDETGTLEYGQVFVQISSARHRHISDTSAFDMSDSEDH 802
+L LR KSRIF+ +GR +MGCLDE G LE+GQ F+Q+S + +++
Sbjct: 792 QLWGLREKSRIFVTSGRWLMGCLDEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTD 851
Query: 803 L-VIVGNVTVAKNPCLHPGDVRVLNAVNVPLLYHMVDCVVFPQKGSRPHPNECSGSDLDG 862
L V+ G V +AKNPCLHPGDVR+L AV+VP L+HM DC++FPQKG RPH NE SGSDLDG
Sbjct: 852 LEVVKGYVAIAKNPCLHPGDVRILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDG 911
Query: 863 DIYFVCWDTELIPP--RQIPPMDYTPAPPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANA 922
D+YFV WD +LIPP + P M Y A L R V +D+ ++F + N+ LG I NA
Sbjct: 912 DLYFVAWDQKLIPPNRKSYPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNA 971
Query: 923 HTAFADKEPFKARSAPCIELAKLFSIAVDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSY 982
H AD+ + A C+ LA+L + AVDFPKTG +P HL K +PDFM K D +Y
Sbjct: 972 HVVHADRSEYGAMDEECLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTY 1031
Query: 983 ESKNVIGKLFRAVKGIAPNISYIRS-FTRDVAMRCYDSDMEAEGFEDYVEDAIYHKTIYD 1042
+S ++G+L+R VK + + S + D + YD+ +E GFED + +A HK +YD
Sbjct: 1032 KSNKILGRLYRRVKEVYDEDAEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYD 1091
Query: 1043 YKLGNLLDYYGIKSESEIFSGNIMRMSKSFTRRRD--AEAINLAARSLRKEARTWFNTKE 1102
+L LL Y ++ E EI +G+I M K ++++ E + + SL+KE R F
Sbjct: 1092 GQLIGLLGQYKVQKEEEIVTGHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETI 1151
Query: 1103 SGPDSGSDD-----LFAKASAWYHVTYHHSYWG---SYNDGMKRDH--YLSFPWCVYHKL 1115
++ S++ KASAWYHVTYH + D + H LSF W L
Sbjct: 1152 PDHENLSEEEKNILYEKKASAWYHVTYHPEWVKKSLELQDPDESSHAAMLSFAWIAADYL 1178
BLAST of Cp4.1LG01g05850 vs. TAIR10
Match:
AT2G19930.1 (AT2G19930.1 RNA-dependent RNA polymerase family protein)
HSP 1 Score: 119.8 bits (299), Expect = 1.1e-26
Identity = 161/640 (25.16%), Postives = 255/640 (39.84%), Query Frame = 1
Query: 398 DNFLRVSFVDEEWDKMRSTDLLPRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAF 457
DN L V F D + K ST + D Y + KNGI IG ++++F F
Sbjct: 242 DNVLTVKFADVQ--KSSSTYSI------------DHYFTYKGIAKNGIMIGLRRYQFFVF 301
Query: 458 SSSQLRENSLWMFASRPGLDAAVIREWMGDFRHIKNP----------------------- 517
E + + + IR F ++NP
Sbjct: 302 KDGGKEEKKKDLSTKK--VKCYFIRTDSTAFYDMQNPYILTGKSIYEARMHFMHVHRAPT 361
Query: 518 -AKYAARLGQSFGSSTETLSVGRH--EREIIPDIEVQHGEVKYVF---------SDGIGK 577
A Y AR S T+TL V + I DI + K V SDG G
Sbjct: 362 LANYMARFSLIL-SKTKTLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGY 421
Query: 578 ISSDFAKRVA-----SKCVLVFT---------PSAFQIR--YGGY--KGVVAVDPR---- 637
IS D A+ KC+ + P Q R Y GY KG ++ +
Sbjct: 422 ISEDLARMCPLNIFKGKCLRSESIQEACYQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPR 481
Query: 638 ------SSVKLSLRKSMCKFESDNTKLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEK 697
S +K+S S+ F + N V + + L++ L+ LLS G+ +E F
Sbjct: 482 TVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPKRTKLSKNLVALLSYGGIPNEFFLD 541
Query: 698 KQSEALEQLDAILTDPLKAQEALELMSPGENTNILKEMLKCGY---KPDVEPYLSMMLQT 757
LE+ +I + A A ++ N +M+ G +P ++ YLS++L+T
Sbjct: 542 ILLNTLEESKSIFYNKRAALNAALNYGEMDDQNAA-QMILVGIPLDEPHLKNYLSILLKT 601
Query: 758 FRESKLLELRTKSRIFIPNGRAMMGCLDETGTLEYGQVFVQISSARHRHISDTSAFDMSD 817
+ +L+ ++ + +MG +D TG L+ +V V + S +
Sbjct: 602 EKN----DLKA-GKLPVTESYYLMGTVDPTGALKEDEVCVILESGQ-------------- 661
Query: 818 SEDHLVIVGNVTVAKNPCLHPGDVRVLNAVNVPLLYHMVD----CVVFPQKGSRPHPNEC 877
I G V V +NP LH GD+ +L A V L V V FPQKG R +E
Sbjct: 662 ------ISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEI 721
Query: 878 SGSDLDGDIYFVCWDTELI---PPRQIPPMDYTP-------APPIQLDRDVTIEDVQEYF 937
+G D DGD+YF+ + EL+ P + P + TP P QL + E++ E F
Sbjct: 722 AGGDFDGDMYFISRNPELLENFKPSE-PWVSLTPPSKSNSGRAPSQLSPEELEEELFEMF 781
Query: 938 V--NYMVNDSLGIIANAHTAFADK---------EPFKARSAPCIELAKLFSIAVDFPKTG 947
+ + ++ +GI A++ D+ E +EL ++ A+D PK G
Sbjct: 782 LTAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKG 835
BLAST of Cp4.1LG01g05850 vs. TAIR10
Match:
AT2G19910.1 (AT2G19910.1 RNA-dependent RNA polymerase family protein)
HSP 1 Score: 113.6 bits (283), Expect = 7.9e-25
Identity = 109/419 (26.01%), Postives = 177/419 (42.24%), Query Frame = 1
Query: 564 FQIRYGGY--KGVVAVDPRSSVK-LSLRKSMCKFESDNTKLDVLGYSKYQ---------P 623
F+I Y GY KG + + + + +R SM K D T ++ ++ +
Sbjct: 455 FRIFYNGYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRK 514
Query: 624 CFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPLKAQEALELMSPGENTNILKE 683
L+R L+ LLS GV ++ F LE+ I A +A + T +
Sbjct: 515 ARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYGDDQYT---AD 574
Query: 684 MLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNGRAMMGCLDETGTLEYGQVFV 743
M+ G D EPYL L +++ L+ R I +MG +D TG L+ ++ V
Sbjct: 575 MILVGIPLD-EPYLKDRLSYLLKTERNALKA-GRFPIDESYYIMGTVDPTGELKENEICV 634
Query: 744 QISSARHRHISDTSAFDMSDSEDHLVIVGNVTVAKNPCLHPGDVRVLNAVNVPLLYHMVD 803
+ S + I G+V V +NP LH GD+ VL A V L V
Sbjct: 635 ILHSGQ--------------------ISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVG 694
Query: 804 ----CVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIP---------PRQIPPMDYTP 863
V FPQKG R +E +G D DGD+YF+ + +L+ P Y
Sbjct: 695 NAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCG 754
Query: 864 APPIQLDRDVTIEDVQEYFVN--YMVNDSLGIIANAHTAFAD----------KEPFKARS 923
P +L + E++ + F+ + D +G+ A+ D KE ++ R
Sbjct: 755 RKPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYE-RK 814
Query: 924 APCIELAKLFSIAVDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAV 946
++L ++ A+D PK G +P L +K FP +ME+ + + S +++G +F V
Sbjct: 815 KNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTV 847
BLAST of Cp4.1LG01g05850 vs. NCBI nr
Match:
gi|948561981|gb|ALM88236.1| (RNA-dependent RNA polymerase 1a [Cucumis melo])
HSP 1 Score: 1911.3 bits (4950), Expect = 0.0e+00
Identity = 937/1131 (82.85%), Postives = 1018/1131 (90.01%), Query Frame = 1
Query: 1 MGKTVHISGFPSHATADSVKSFLELRTGLGTVYAIKVRPPKRGGSRVYAIVQFIGAAQAE 60
MGKT+HISGFPSH TAD+VK+FLE TG GTVYAIKVRPPKRGG R+YAIVQF A QAE
Sbjct: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
Query: 61 LIISLANQRLWYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEKFHVLWEGD 120
LI+SLANQRLWYGSSYLKAR+ +VDIVPKP+TY++TL+DL LCFGCQVSSEKF VLWEG+
Sbjct: 61 LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYTLKDLLLCFGCQVSSEKFRVLWEGN 120
Query: 121 VELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAPRIY 180
V+LVTFG+ MRKMNFHL +N VEYR +LSYENIWQIQLH Q QSMK LLIQLYGAPRIY
Sbjct: 121 VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQLYGAPRIY 180
Query: 181 KKVAPSGGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSIGQSSSLCLKLPNGRQLPNFRR 240
KKVAPS GQIFD+P+ NFF EVPDDQWVRT DFT S SIGQSSSLCLKLPNG +LP F++
Sbjct: 181 KKVAPSSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240
Query: 241 HFAYYEEFEDEFKLVDGGNGVSCSDDLVPVVDSRPNVLLPYEIIFKVNVLVQNGCIPGPS 300
+FAYYEEFE EF+L+D G S DL P+VDSRP+VL PYEIIFK+N LVQ+GCIP
Sbjct: 241 NFAYYEEFEHEFRLIDEGASFSFCRDLAPIVDSRPHVL-PYEIIFKINALVQHGCIPWSL 300
Query: 301 LETGFYRLVDPS-RIRVEYVENALEKLFHLKECCYEPSSFLTEQYKKYAKHPSNSPAIAL 360
L+T FYRLV+ IR+E+VE+ALEKLFHLKEC Y+PS+FLTEQ+++Y++HP NSP I+L
Sbjct: 301 LDTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISL 360
Query: 361 DAGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRSTDLL 420
D GLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFS+ +DNFLRVSFVDEEWDKMRSTDLL
Sbjct: 361 DDGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLL 420
Query: 421 PRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGLDAA 480
PRM+S E+ KTDIYRRILSVLKNGI IGDK F+FLAFSSSQLR+NSLWMFAS P +DAA
Sbjct: 421 PRMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAA 480
Query: 481 VIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVGRHEREIIPDIEVQHGEVKYVFSDG 540
IR WMGDFRHIKNPAKYAARLGQSFGSSTE LSV +EREIIPDIEVQHGEVKYVFSDG
Sbjct: 481 YIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDG 540
Query: 541 IGKISSDFAKRVASKCVLVFTPSAFQIRYGGYKGVVAVDPRSSVKLSLRKSMCKFESDNT 600
IGKISS FAK VA+KC PSAFQIRYGGYKGVVAVDP S++KLSLRKSMCKFESDN
Sbjct: 541 IGKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNI 600
Query: 601 KLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPLKAQEALEL 660
KLDVLG+SKYQPCFLNRQLITLLSTLGV+DE+FEKKQSEA+EQLDAILTDPLKAQEALEL
Sbjct: 601 KLDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALEL 660
Query: 661 MSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNGRAMMGCLD 720
MSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFR SKLLELRTKSRIFIPNGRAMMGCLD
Sbjct: 661 MSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLD 720
Query: 721 ETGTLEYGQVFVQISSARHRHISDTSAFDMSDSEDHLVIVGNVTVAKNPCLHPGDVRVLN 780
ET TLEYGQVFVQIS RHR++S++ AF+ S E LVI G VTVAKNPCLHPGDVRVL
Sbjct: 721 ETMTLEYGQVFVQISGGRHRNLSESFAFN-SGQEHCLVIEGKVTVAKNPCLHPGDVRVLK 780
Query: 781 AVNVPLLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQIPPMDYTPA 840
AVNVP LYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPR+I PMDYTPA
Sbjct: 781 AVNVPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRRITPMDYTPA 840
Query: 841 PPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSAPCIELAKLFSIA 900
PI+LDRDVT ED+QEYFVNYMVNDSLGIIANAHTAFADKEPFKARS+PC+ELAK FSIA
Sbjct: 841 LPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFSIA 900
Query: 901 VDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAVKGIAPNISYIRSFT 960
VDFPKTGVPAIIPSHL VKEFPDFMEKPDRPSYESKNVIGKLFRAVK IAP +S+I+ FT
Sbjct: 901 VDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQPFT 960
Query: 961 RDVAMRCYDSDMEAEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKSESEIFSGNIMRMSK 1020
RDVA RCYD DME EGFEDYVEDA YHK+ YD KLGNLLDYYGIKSE+EI SG+IMRMSK
Sbjct: 961 RDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRMSK 1020
Query: 1021 SFTRRRDAEAINLAARSLRKEARTWFNTKESGPDSGSDDLFAKASAWYHVTYHHSYWGSY 1080
SFTRRRDAEAINLA RSLRKEARTWFN +E G DS SDDLFAKASAWY+VTYHHSYWG Y
Sbjct: 1021 SFTRRRDAEAINLAVRSLRKEARTWFNARE-GADSNSDDLFAKASAWYYVTYHHSYWGYY 1080
Query: 1081 NDGMKRDHYLSFPWCVYHKLMQVKENNLRRREKASRLATLDRFSRALNLDG 1131
N+GMKRD+YLSFPWC+Y KLMQ+KENNLR+RE+A+RLAT DRF LNL G
Sbjct: 1081 NEGMKRDYYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGYVLNLGG 1128
BLAST of Cp4.1LG01g05850 vs. NCBI nr
Match:
gi|659130594|ref|XP_008465250.1| (PREDICTED: RNA-dependent RNA polymerase 1 [Cucumis melo])
HSP 1 Score: 1909.4 bits (4945), Expect = 0.0e+00
Identity = 936/1131 (82.76%), Postives = 1015/1131 (89.74%), Query Frame = 1
Query: 1 MGKTVHISGFPSHATADSVKSFLELRTGLGTVYAIKVRPPKRGGSRVYAIVQFIGAAQAE 60
MGKT+HISGFPSH TAD+VK+FLE TG GTVYAIKVRPPKRGG R+YAIVQF A QAE
Sbjct: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
Query: 61 LIISLANQRLWYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEKFHVLWEGD 120
LI+SLANQRLWYGSSYLKAR+ +VDIVPKP+TY++ L+DL LCFGCQVSSEKF VLWEG+
Sbjct: 61 LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYMLKDLLLCFGCQVSSEKFRVLWEGN 120
Query: 121 VELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAPRIY 180
V+LVTFG+ MRKMNFHL +N VEYR +LSYENIWQIQLH Q QSMK LLIQLYGAPRIY
Sbjct: 121 VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQLYGAPRIY 180
Query: 181 KKVAPSGGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSIGQSSSLCLKLPNGRQLPNFRR 240
KKVAPS GQIFD+P+ NFF EVPDDQWVRT DFT S SIGQSSSLCLKLPNG +LP F++
Sbjct: 181 KKVAPSSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240
Query: 241 HFAYYEEFEDEFKLVDGGNGVSCSDDLVPVVDSRPNVLLPYEIIFKVNVLVQNGCIPGPS 300
+FAYYEEFE EF+L+D S DL P+VDSRP+VL PYEIIFK+N LVQ+GCIP
Sbjct: 241 NFAYYEEFEHEFRLIDEDASFSFCRDLAPIVDSRPHVL-PYEIIFKINALVQHGCIPWSL 300
Query: 301 LETGFYRLVDPS-RIRVEYVENALEKLFHLKECCYEPSSFLTEQYKKYAKHPSNSPAIAL 360
L+T FYRLV+ IR+E+VE+ALEKLFHLKEC Y+PS+FLTEQ+++Y++HP NSP I+L
Sbjct: 301 LDTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISL 360
Query: 361 DAGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRSTDLL 420
D GLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFS+ +DNFLRVSFVDEEWDKMRSTDLL
Sbjct: 361 DDGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLL 420
Query: 421 PRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGLDAA 480
PRM+S E+ KTDIYRRILSVLKNGI IGDK F+FLAFSSSQLR+NSLWMFAS P +DAA
Sbjct: 421 PRMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAA 480
Query: 481 VIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVGRHEREIIPDIEVQHGEVKYVFSDG 540
IR WMGDFRHIKNPAKYAARLGQSFGSSTE LSV +EREIIPDIEVQHGEVKYVFSDG
Sbjct: 481 YIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDG 540
Query: 541 IGKISSDFAKRVASKCVLVFTPSAFQIRYGGYKGVVAVDPRSSVKLSLRKSMCKFESDNT 600
IGKISS FAK VA+KC PSAFQIRYGGYKGVVAVDP S++KLSLRKSMCKFESDN
Sbjct: 541 IGKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNI 600
Query: 601 KLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPLKAQEALEL 660
KLDVLG+SKYQPCFLNRQLITLLSTLGV+DE+FEKKQSEA+EQLDAILTDPLKAQEALEL
Sbjct: 601 KLDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALEL 660
Query: 661 MSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNGRAMMGCLD 720
MSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFR SKLLELRTKSRIFIPNGRAMMGCLD
Sbjct: 661 MSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLD 720
Query: 721 ETGTLEYGQVFVQISSARHRHISDTSAFDMSDSEDHLVIVGNVTVAKNPCLHPGDVRVLN 780
ET TLEYGQVFVQIS RHR++S++ AF+ S E LVI G VTVAKNPCLHPGDVRVL
Sbjct: 721 ETMTLEYGQVFVQISGGRHRNLSESFAFN-SGQEHCLVIEGKVTVAKNPCLHPGDVRVLK 780
Query: 781 AVNVPLLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQIPPMDYTPA 840
AVNVP LYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQI PMDYTPA
Sbjct: 781 AVNVPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQITPMDYTPA 840
Query: 841 PPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSAPCIELAKLFSIA 900
PI+LDRDVT ED+QEYFVNYMVNDSLGIIANAHTAFADKEPFKARS+PC+ELAK FSIA
Sbjct: 841 LPIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFSIA 900
Query: 901 VDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAVKGIAPNISYIRSFT 960
VDFPKTGVPAIIPSHL VKEFPDFMEKPDRPSYESKNVIGKLFRAVK IAP +S+I+ FT
Sbjct: 901 VDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQPFT 960
Query: 961 RDVAMRCYDSDMEAEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKSESEIFSGNIMRMSK 1020
RDVA RCYD DME EGFEDY EDA YHK+ YD KLGNLLDYYGIKSE+EI SG+IMRMSK
Sbjct: 961 RDVARRCYDCDMEVEGFEDYFEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRMSK 1020
Query: 1021 SFTRRRDAEAINLAARSLRKEARTWFNTKESGPDSGSDDLFAKASAWYHVTYHHSYWGSY 1080
SFTRRRDAEAINLA RSLRKEARTWFN +E G DS SDDLFAKASAWY+VTYHHSYWG Y
Sbjct: 1021 SFTRRRDAEAINLAVRSLRKEARTWFNARE-GADSNSDDLFAKASAWYYVTYHHSYWGCY 1080
Query: 1081 NDGMKRDHYLSFPWCVYHKLMQVKENNLRRREKASRLATLDRFSRALNLDG 1131
N+GMKRDHYLSFPWC+Y KLMQ+KENNLR+RE+A+RLAT DRF LNL G
Sbjct: 1081 NEGMKRDHYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGHVLNLGG 1128
BLAST of Cp4.1LG01g05850 vs. NCBI nr
Match:
gi|525507304|ref|NP_001267692.1| (RNA-dependent RNA polymerase 1-like [Cucumis sativus])
HSP 1 Score: 1908.3 bits (4942), Expect = 0.0e+00
Identity = 933/1131 (82.49%), Postives = 1014/1131 (89.66%), Query Frame = 1
Query: 1 MGKTVHISGFPSHATADSVKSFLELRTGLGTVYAIKVRPPKRGGSRVYAIVQFIGAAQAE 60
MGKT+HISGFPSH TAD+VK+FLE TG GTVYAIKVRPPKRGG R+YAIVQF A QAE
Sbjct: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
Query: 61 LIISLANQRLWYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEKFHVLWEGD 120
LIISLANQRLWYGSSYLKARA +VDIVPKPRTY++TLE+L LCFGCQVS+EKF VLWEG+
Sbjct: 61 LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
Query: 121 VELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAPRIY 180
V+LVTFG+ MRKMNFHL + VEYR +LSYE IWQIQLH + QSMK LLIQL GAPRIY
Sbjct: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
Query: 181 KKVAPSGGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSIGQSSSLCLKLPNGRQLPNFRR 240
KKVAP+ GQIFD+PL NFFKE DDQWVRT DFT S SIGQSSSLCLKLPNGRQLP F++
Sbjct: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
Query: 241 HFAYYEEFEDEFKLVDGGNGVSCSDDLVPVVDSRPNVLLPYEIIFKVNVLVQNGCIPGPS 300
+FAYYEEFE EF+L+D S DL P+VDSR +VL PY+I+FK+N LVQ GCIP P
Sbjct: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVL-PYKILFKINALVQYGCIPWPL 300
Query: 301 LETGFYRLVDPS-RIRVEYVENALEKLFHLKECCYEPSSFLTEQYKKYAKHPSNSPAIAL 360
L+ FYRLV+ R+E+VE+ALEKLFHLKEC Y+PS+FLTEQY+KY++HP NSP I+L
Sbjct: 301 LDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISL 360
Query: 361 DAGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRSTDLL 420
D GLVYVRRVQITPCKV+FCGPEVNVSNRVLRHFS+ +DNFLRVSFVDEEWDKMRSTDLL
Sbjct: 361 DDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLL 420
Query: 421 PRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGLDAA 480
PRM+S E+GKTDIYRRILSVLKNGI IGDK F+FLAFSSSQLR+NSLWMFAS P +DAA
Sbjct: 421 PRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAA 480
Query: 481 VIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVGRHEREIIPDIEVQHGEVKYVFSDG 540
IR WMGDFRHIKNPAKYAARLGQSFGSSTE LSV +EREIIPDIEVQ GE+KYVFSDG
Sbjct: 481 YIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDG 540
Query: 541 IGKISSDFAKRVASKCVLVFTPSAFQIRYGGYKGVVAVDPRSSVKLSLRKSMCKFESDNT 600
IGKISS FAK VA+KC PSAFQIRYGGYKGVVAVDP S++KLSLRKSMCKFESDNT
Sbjct: 541 IGKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNT 600
Query: 601 KLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPLKAQEALEL 660
KLDVLG+SKYQPCFLNRQLITL+STLGV+DE+FEKKQSEA+EQLDAILTDPLKAQEALEL
Sbjct: 601 KLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALEL 660
Query: 661 MSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNGRAMMGCLD 720
MSPGENTNILKEMLKCGY+PDVEPYLSMMLQTFR SKLLELRTKSRIFIPNGRAMMGCLD
Sbjct: 661 MSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLD 720
Query: 721 ETGTLEYGQVFVQISSARHRHISDTSAFDMSDSEDHLVIVGNVTVAKNPCLHPGDVRVLN 780
ET TLEYGQVFVQISS RHR++S++ AF+ E HLVI GNVTVAKNPCLHPGDVRVL
Sbjct: 721 ETRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLK 780
Query: 781 AVNVPLLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQIPPMDYTPA 840
AVN+P LYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIP RQIPPMDYTPA
Sbjct: 781 AVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPA 840
Query: 841 PPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSAPCIELAKLFSIA 900
PP +LDRDVT ED+QEYFVNYMVNDSLGIIANAHTAFADKE FKARS+PC+ELAKLFS+A
Sbjct: 841 PPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVA 900
Query: 901 VDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAVKGIAPNISYIRSFT 960
VDFPKTGVPAIIPSHL VKEFPDFMEKPDRPSYES VIGKLFRAVK IAP +S+IRSFT
Sbjct: 901 VDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFT 960
Query: 961 RDVAMRCYDSDMEAEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKSESEIFSGNIMRMSK 1020
RDVA RCYD DME EGFEDYVEDA YHK+ YDYKLGNLLDYYGIKSE+E+ SG+IMRMSK
Sbjct: 961 RDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSK 1020
Query: 1021 SFTRRRDAEAINLAARSLRKEARTWFNTKESGPDSGSDDLFAKASAWYHVTYHHSYWGSY 1080
SFTRRRDAEAINLA RSLRKEARTWFN +E G DS SDDLFAKASAWY+VTYHHSYWG Y
Sbjct: 1021 SFTRRRDAEAINLAVRSLRKEARTWFNARE-GADSNSDDLFAKASAWYYVTYHHSYWGCY 1080
Query: 1081 NDGMKRDHYLSFPWCVYHKLMQVKENNLRRREKASRLATLDRFSRALNLDG 1131
N+GMKRDHYLSFPWCVY KLMQ+KENNLRRRE+A+RLA+ DRF LNL G
Sbjct: 1081 NEGMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLGG 1129
BLAST of Cp4.1LG01g05850 vs. NCBI nr
Match:
gi|1009154798|ref|XP_015895367.1| (PREDICTED: RNA-dependent RNA polymerase 1 [Ziziphus jujuba])
HSP 1 Score: 1622.4 bits (4200), Expect = 0.0e+00
Identity = 793/1132 (70.05%), Postives = 932/1132 (82.33%), Query Frame = 1
Query: 1 MGKTVHISGFPSHATADSVKSFLELRTGLGTVYAIKVRPPKRGGSRVYAIVQFIGAAQAE 60
MG+T+ +SGFPS +A+ VK FLE TG GTVYAIK+R K GG R YAIVQF AE
Sbjct: 1 MGRTIQVSGFPSSVSAELVKKFLENLTGEGTVYAIKLRKFKNGG-RYYAIVQFTSTRDAE 60
Query: 61 LIISLANQRLWYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEKFHVLWEGD 120
IISLA RLWYG+SYL AR+ D DIV KPRTY+H+LE++TL FGCQ+S EKF VLW+ +
Sbjct: 61 FIISLAGARLWYGTSYLTARSMDTDIVAKPRTYLHSLENITLHFGCQISKEKFSVLWKRE 120
Query: 121 VELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAPRIY 180
V FG+ +R+++FH ++ +VEY+ QLSYENIWQI+LHR Q++K LLIQLYGAPRIY
Sbjct: 121 NVSVDFGIGLRRLHFHFMYQYVEYKLQLSYENIWQIELHRPLGQTVKYLLIQLYGAPRIY 180
Query: 181 KKVAPSGGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSIGQSSSLCLKLPNGRQLPNFRR 240
+K PS G +++DP+FNFFK+ PDDQWVR DFTPS IGQSS+LCL+LP+G +LPNF+
Sbjct: 181 EKDVPSSGDVYEDPIFNFFKDTPDDQWVRATDFTPSCRIGQSSALCLELPSGPRLPNFKE 240
Query: 241 HFAYYEEFEDEFKLVDGGNGVSCSDDLVPVVDSRPNVLLPYEIIFKVNVLVQNGCIPGPS 300
+FAYY+E E F L + G SC+ LVP+V +V LPY+IIFK+N L+Q GC+ GPS
Sbjct: 241 NFAYYKESEGRFSL-ETGFPFSCNLYLVPIVGPPLDVHLPYDIIFKINALLQQGCLTGPS 300
Query: 301 LETGFYRLVDPSRIRVEYVENALEKLFHLKECCYEPSSFLTEQYKKY--AKHPSNSPAIA 360
L+ FYRLVDP RI V +E+AL+KL++LKECCYEPS++L EQY+KY +K P SP I+
Sbjct: 301 LDAAFYRLVDPRRINVACIEHALDKLYNLKECCYEPSTWLNEQYRKYFKSKRPPKSPMIS 360
Query: 361 LDAGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRSTDL 420
LDAGLVYVRRVQITPCKVYF GPE+NVSNRVLRH+ +DNFLRVSFVDEE DKM STDL
Sbjct: 361 LDAGLVYVRRVQITPCKVYFFGPEINVSNRVLRHYPNHIDNFLRVSFVDEELDKMYSTDL 420
Query: 421 LPRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGLDA 480
PR +++ KT +Y+R+LSVL++GI IG+KKF+FLAFSSSQLR+NS WMFA G+ A
Sbjct: 421 SPRNSAT----KTGLYKRVLSVLRDGIIIGNKKFEFLAFSSSQLRDNSTWMFAPSDGITA 480
Query: 481 AVIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVGRHEREIIPDIEVQHGEVKYVFSD 540
A IREWMGDFR I+N AKYAARLGQSFGSSTETLSV RHE E IPDIEV +G VKY FSD
Sbjct: 481 ADIREWMGDFRQIRNVAKYAARLGQSFGSSTETLSVSRHEVEKIPDIEVVYGGVKYAFSD 540
Query: 541 GIGKISSDFAKRVASKCVLV-FTPSAFQIRYGGYKGVVAVDPRSSVKLSLRKSMCKFESD 600
GIGKISS+FA++VASKC TPSAFQIRYGGYKGVVAVDP SS KLSLRKSMCK+ESD
Sbjct: 541 GIGKISSEFARKVASKCGCNGVTPSAFQIRYGGYKGVVAVDPTSSFKLSLRKSMCKYESD 600
Query: 601 NTKLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPLKAQEAL 660
N KLDVL YSK+QPCFLNRQLI+LLSTLGV+D+VF KKQS+A++QLDAILTDPL+AQEAL
Sbjct: 601 NIKLDVLAYSKFQPCFLNRQLISLLSTLGVEDQVFLKKQSKAVQQLDAILTDPLRAQEAL 660
Query: 661 ELMSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNGRAMMGC 720
+LMSPGENTN+LKE+L CGYKPD EPYLSMMLQTFR SKLLELRTKSRIFIP+GRAMMGC
Sbjct: 661 DLMSPGENTNVLKELLMCGYKPDTEPYLSMMLQTFRASKLLELRTKSRIFIPDGRAMMGC 720
Query: 721 LDETGTLEYGQVFVQISSARHRHISDTSAFDMSDSEDHLVIVGNVTVAKNPCLHPGDVRV 780
LDET TLEYGQVFVQ S +R+R D+ + ++ ++ G+V VAKNPCLHPGDVRV
Sbjct: 721 LDETRTLEYGQVFVQFSGSRYRQFGDSPMLGGNGTKQRFIVTGSVVVAKNPCLHPGDVRV 780
Query: 781 LNAVNVPLLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQIPPMDYT 840
L AVNV L+HMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWD ELIP QI PMDYT
Sbjct: 781 LRAVNVSELHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPCHQIEPMDYT 840
Query: 841 PAPPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSAPCIELAKLFS 900
PAP + D DVTIE+VQEYF NY+VNDSLGIIANAHT FADKE KA S+PC+ELA+LFS
Sbjct: 841 PAPSMLKDDDVTIEEVQEYFANYIVNDSLGIIANAHTVFADKEYGKAMSSPCVELARLFS 900
Query: 901 IAVDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAVKGIAPNISYIRS 960
IAVDFPKTG+PA+IP HL+VKE+PDFMEKPD+ +YES+NVIGKLFR VK IAPN S IRS
Sbjct: 901 IAVDFPKTGIPAVIPPHLHVKEYPDFMEKPDKQTYESQNVIGKLFREVKDIAPNTSSIRS 960
Query: 961 FTRDVAMRCYDSDMEAEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKSESEIFSGNIMRM 1020
FT +VA + YD DME +GFEDY++DA Y+K YDYKLGNLLDYYGIK+E+EI SG+I+RM
Sbjct: 961 FTSEVARKSYDPDMEVDGFEDYLDDAYYYKNSYDYKLGNLLDYYGIKTEAEILSGSILRM 1020
Query: 1021 SKSFTRRRDAEAINLAARSLRKEARTWFNTKESGPDSGSDDLFAKASAWYHVTYHHSYWG 1080
SKSFT+RRDAE+IN+A R+LRKEAR WFN K SG D SDDL+AKASAWYHVTYH SYWG
Sbjct: 1021 SKSFTKRRDAESINMAVRALRKEARNWFNEKRSGGDFESDDLYAKASAWYHVTYHPSYWG 1080
Query: 1081 SYNDGMKRDHYLSFPWCVYHKLMQVKENNLRRREKASRLATLDRFSRALNLD 1130
SYN+GM RDHYLSF WCVY +L+++KE+ RR + + F L L+
Sbjct: 1081 SYNEGMNRDHYLSFAWCVYDRLVEIKEDKASRRRHLQLSSLEEHFCYGLRLN 1126
BLAST of Cp4.1LG01g05850 vs. NCBI nr
Match:
gi|224099571|ref|XP_002311536.1| (RNA-directed RNA Polymerase family protein [Populus trichocarpa])
HSP 1 Score: 1573.9 bits (4074), Expect = 0.0e+00
Identity = 773/1133 (68.23%), Postives = 914/1133 (80.67%), Query Frame = 1
Query: 1 MGKTVHISGFPSHATADSVKSFLELRTGLGTVYAIKVRPPKRGGSRVYAIVQFIGAAQAE 60
M KTV +SGFPS TA +V+ FLE TG GTV A+K+R + GG+R YAIVQF AE
Sbjct: 1 MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGARKYAIVQFTTTRAAE 60
Query: 61 LIISLANQRLWYGSSYLKARAADVDIVPKPRTYVHTLEDLTLCFGCQVSSEKFHVLWEGD 120
IISLAN RLWYG SYL AR D DI+P+PR+++HT+E +TL FG Q S EKF +W G+
Sbjct: 61 QIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWSGN 120
Query: 121 VELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAPRIY 180
V FG+ MRK++F L HN EY+ L +ENIWQI+LHR + Q++K LLIQLYGAPRIY
Sbjct: 121 NVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRIY 180
Query: 181 KKVAPSGGQIFDDPLFNFFKEVPDDQWVRTADFTPSNSIGQSSSLCLKLPNGRQLPNFRR 240
++ PS +F+DPL N+F++VPD+QWVRT DFTPS IG SSSLCL+LPN QLPNF
Sbjct: 181 ERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNFNE 240
Query: 241 HFAYYEEFEDEFKLVDGGNGVSCSDDLVPVVDSRPNVLLPYEIIFKVNVLVQNGCIPGPS 300
+F YY+E E F L + G S + DLVP+V V LPY I+F+VN+LVQNGC+ G
Sbjct: 241 NFFYYKENEGTFVL-ESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSM 300
Query: 301 LETGFYRLVDPSRIRVEYVENALEKLFHLKECCYEPSSFLTEQYKKY--AKHPSNSPAIA 360
L+ FYRLVDP+R+ V +E ALEKL+HLKECCYEPS + EQYKKY + +P SP ++
Sbjct: 301 LDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVLS 360
Query: 361 LDAGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRSTDL 420
LDAGLVYV +VQITPCKV+FCGPEVNVSNRVLR + D+DNFLRVSFVDEE +K+ STD+
Sbjct: 361 LDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTDV 420
Query: 421 LPRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGLDA 480
PR +S E +T IY RILS L+NGI IGDKKF+FLAFSSSQLRENS WMFASR GL A
Sbjct: 421 SPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTA 480
Query: 481 AVIREWMGDFRHIKNPAKYAARLGQSFGSSTETLSVGRHEREIIPDIEVQHGEVKYVFSD 540
A IR WMG F I+N A+YAARLGQSFGSSTETLSV HE EIIPDIEV G +Y+FSD
Sbjct: 481 ADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLFSD 540
Query: 541 GIGKISSDFAKRVASKCVLV-FTPSAFQIRYGGYKGVVAVDPRSSVKLSLRKSMCKFESD 600
GIGKIS++FA++VA KC FTPSAFQIRY GYKGVVAVDP SS KLSLR+SM K+ES+
Sbjct: 541 GIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYESE 600
Query: 601 NTKLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPLKAQEAL 660
NTKLDVL +SKYQPCFLNRQLITLLSTLGV D FE+KQ EA++QLDA+LTDPL+AQEAL
Sbjct: 601 NTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEAL 660
Query: 661 ELMSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNGRAMMGC 720
ELMSPGENTNILKEML CGY+PD EP+LSMMLQTFR SKLLELRTK+RIFIPNGR+MMGC
Sbjct: 661 ELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGC 720
Query: 721 LDETGTLEYGQVFVQISSARHRHISDTS-AFDMSDSEDHLVIVGNVTVAKNPCLHPGDVR 780
LDET TLE+GQVFV+ S +R R++ D+S F +I G+V VAKNPCLHPGD+R
Sbjct: 721 LDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLHPGDLR 780
Query: 781 VLNAVNVPLLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQIPPMDY 840
+L AV+VP L+HMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD ELIP +QI PMDY
Sbjct: 781 ILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQISPMDY 840
Query: 841 TPAPPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSAPCIELAKLF 900
TP PP+QLD DVTIE+V+EYF NY+VNDSLG+IANAHTA ADKE KA S PC+ELA+ F
Sbjct: 841 TPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVELARKF 900
Query: 901 SIAVDFPKTGVPAIIPSHLNVKEFPDFMEKPDRPSYESKNVIGKLFRAVKGIAPNISYIR 960
SIAVDFPKTGVPA IPS+L +E+PDFMEKPD+PSYES+NVIGKLFR VK IAP S IR
Sbjct: 901 SIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIR 960
Query: 961 SFTRDVAMRCYDSDMEAEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKSESEIFSGNIMR 1020
SFT DVA +CYD DME +GFEDY++DA Y+K+ YDYKLGNL++YYGIK+E+E+ SG+ M+
Sbjct: 961 SFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSFMK 1020
Query: 1021 MSKSFTRRRDAEAINLAARSLRKEARTWFNTKESGPDSGSDDLFAKASAWYHVTYHHSYW 1080
MSKSFT++RDAEAI +A RSL+KEAR+WFN K SG DS +DD+ AKASAWYHVTYHH+YW
Sbjct: 1021 MSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHNYW 1080
Query: 1081 GSYNDGMKRDHYLSFPWCVYHKLMQVKENNLRRREKASRLATLDR-FSRALNL 1129
G YN+GM RDH+LSFPWCVY KL+Q+K N R ++ L +++R FSR L+L
Sbjct: 1081 GCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLILPSVERQFSRGLHL 1132
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| RDR1_ARATH | 0.0e+00 | 62.62 | RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1 | [more] |
| RDR1_ORYSJ | 6.4e-279 | 64.48 | Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 ... | [more] |
| RDR2_ARATH | 3.2e-222 | 39.77 | RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=1 SV=1 | [more] |
| RDR2_ORYSJ | 7.5e-219 | 38.83 | Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica GN=RDR2 ... | [more] |
| SHL2_ORYSJ | 8.1e-165 | 37.84 | Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica GN=SH... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0S1YD00_CUCME | 0.0e+00 | 82.85 | RNA-dependent RNA polymerase 1a OS=Cucumis melo GN=RDR1a PE=2 SV=1 | [more] |
| E9NWK6_CUCSA | 0.0e+00 | 82.49 | RNA-dependent RNA polymerase 1a OS=Cucumis sativus GN=RDR1a PE=2 SV=1 | [more] |
| B9HJH7_POPTR | 0.0e+00 | 68.23 | RNA-directed RNA Polymerase family protein OS=Populus trichocarpa GN=POPTR_0008s... | [more] |
| A0A061EGF4_THECC | 0.0e+00 | 68.29 | RNA-dependent RNA polymerase 1 isoform 1 OS=Theobroma cacao GN=TCM_011292 PE=4 S... | [more] |
| W9RFK1_9ROSA | 0.0e+00 | 66.93 | RNA-dependent RNA polymerase 1 OS=Morus notabilis GN=L484_006779 PE=4 SV=1 | [more] |
