Cp4.1LG01g05250 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g05250
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description60S acidic ribosomal protein P0
LocationCp4.1LG01 : 802243 .. 808940 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAATTTACCAAGGCTGAAAAAAAGGTCGCATACGACGTCAAGCTCTGCCAGCTTCTCGATGATTACAGTCAGGTCTTGATTGTGGCCGCTGACAATGTCGGATCAAACCAGCTCCAGAACATTAGGAAGGGTCTCCGTGGTGATTCTATTGTGCTCATGGGAAAAAATGTTGACTCTGGCAATTCGGAAGACTGTCGACTAAAAATTGGCCGAAGGTTTCTTCGAAAGAAAAATTTGCGGAAGTAAAAGGAGAGAGAGTGAGAGATTTGCTGAAATTGCTGAAGACTCGATGATTTTATTTTACTTCAGTTGAACGGTTTAAATAACAAATCTAATTACAAAAATAGAAAAATCAATTATACAAAAATAGAATAAGTGGACGAAGACTTCGCCCAAATTGCCACTCCTATAATCACGCTCCTCCATTCGCGTGAATTTAGATGTTTTACAAACCTAACTAAATTAAGGCATGGCTTTTATTTAACAATCTCCTCCTAAAAGCTGTACCTTATTATTTGAACTCCGATCTTTGAGCGTAGTTCTTCGAATTTCACCCGCGCCAGGGACTTGGTGAAAATGTCTCCAAGTTGTTCCTCTGTTCGGATGAAATCAATCTTGATGAGCCCTCGATCTGCACATTCTCGAATATAGTGGAATCTGATTTCTATGTGCTTGCTCCGGTCGTGCAAAACTGGATTTTTGATCAGGGAGATCGTAGCTTTGTTGTCTACGTATAGCATTGGTGGATCGCTTTCTCTCCCGATGAGTTCTTCCATTAGTCGTGCAAGCCAGATCCCTTGTGTTGCTGCCATCGAAGCGGCGATGTATTCTGCTTCGCAGGAAGACAAAGCAACCACCTTCTGTTTTGTTGATTGCCAGCAGATCGCGCCGCCTGAGAGAAAGTAGATCATTCCGCTGGTGCTCTTACGATCATCAACGTCACCGGCCATGTCACTATCACTGTAGCCGACCAGCTTGAGTTTCTCCTTTCCGCTCCCTGCACAATATCTCACACCCCAGCCTCTGGTTCCGGCTACATAGCGCAGGATGCGCTTGACAGCCACTAGATGCTCCTCCCTAGGTGCTTCCATAAACCTGCTCACATAGCCAACAGAGTAAGCAAGATCAGGACGAGAGTTTACCAGATAGCGCAGACTCCCGACAATGCTGCGGTAATTGGTGGAGTCGACTGTCGTCGTAGTGCCGGCCTTCCTTAGTTGAAGTCGGGCCTCCATTGGCGTCCTGGTAGGATTACTGTCCACAAGCCCAGTTGTGTCCAGCAGCTTCCTCGCGTATGCACTTTGGCAGATGGAGATGCCGGAAGAGTTCTGTTGCACTTCGATGCCGAGGTAGTAGCTGAGCACACCGAGATCGCTCATCTCGAAGTTTTTCGACATCTCCTTCTTGAACCTTCCGAGGACTCCCACGTCGCCTCCAGTGATTATGAGGTCGTCGACGTACACTCCCACGATCAGTCGCTTTTTGCCGTGGCCGTACGTGTACATGCCATGCTCAGAGGCACAACGTTTGAAATTCAGTGACAGTAGGGTACTGTCGAGCTTCGCGTTCCAGGCTCGTGGGGCTTGTCGAAGCCCGTAGAGTGCTTTGTGCAGGCGCAGTACCTTATTAGGGTTGTCGTTATCCAGGAAGCCAGGTGGTTGTCGAACATAGACGGTCTCCTTCAACTCTCCGTTAAGGAAAGCAGACTTTACGTCCATATGGTGAACCTCCCAAGAGTAATGTGCCGCAATTGCCAGCAAGAAACGAACGGATTCTAACCTTGCTACTGGCGCAAATACCTCTTCGAAGTCCACTCCTTGCTTCTGGACGTAGCCCTTCGCCACCAGACGAGCCTTGTGCTTCACAACTTCTCCTTTTTCGTTGCGCTTCAGTTTGAAGACCCATTTGAGCCCTATGGCTCGGTGTCCCGGTGGCATATCCTCCAGACTCCACGTCTGGTTCTCATTGATGGATGTCATCTCCTCCTGCATTGCCTTCCGCCAGCACGGGTTCTTTTCTGCTTCGGCGAAGGTGTTTGGTTCATCTGCACTGACGGCATGTAGTTCGGCCACTTCTTCGAGCTCGCGCGCTGCTAGTCCAGGTGGTTCACCTCCTCCCACTAGGTCATCCATCCTCCGGTACCTAGCCTCCAGATCAGTATCGTGATCGGCATCCAGCGTCGAATCCGCAGTCCGTGGTGTTGCGAATTCCACTGGTTCAGGTGGTGCACCTGCTGGCGGCGGTGACGTCTCCTGATGCTGGGCTCCTCCTTCTTCAGGCTCGGTGACGAGGTACTCCACCGTGAATTGATTTGGATTACGGTCTGCCTCGATCACGTCATTCCACTGCCAGAAGGTGCTTTCGTCAAAGACGACGTCGCGAGACACGTGAGCTCGCCCCCCTACAGGATCATAGAGTCTGTACGCCTTGCTCCCGGGTTCGTAGCCGATGAAGACGACCTTCAGCCCCCTGGGATCGAGCTTGGCGAGATGGGGACGTGTTACCTTCATGTATGCGACGCAGCCGAACACGCGAAAATGATGTACTGTTGGTTTTTTGTTGTACCAGACCTCATATGGCGTCTTCCCGTCGAGGCTCCGGGTTGGTGACCGATTGAGGAGATAGACAGCCGTCATTACTGCCTCTCCCCAGAATCTCCCAGGCATCCCGGCCGTCACCAACAATGACCTTGCTGTCCCGACAATGGTCTGATTTCGGCGCTCTACCACTCCGTTCTGTTGGGGGGAGTAGGGCGCCGTTAGGTGCCGTTGTATGCCGATCTCGTCGCAGTACTTACTGAAACTTGCCGAGGTGAATTCTCCGCCTCGGTCTGTGCGCAGCACTCGCATCTTCTTCTCACATTCGGCCTCCGCTCGCGCTTTAATGCGCTTAACCGCCTCTGCCGCCTCACTTTTCGCTTGCAGCAGAGTCAGCCACATGAAGCGGCTTTTGTCATCGACTAACAGGAGGAAGAGACTCTTACCGCCTGGGGTCGCCGGCTTGATGGGCCCGCAGATATCGCCGTGTACAAGCTCCAACGGCTCATCGGCTCGGTATGCTGTTCGAGACGGAAAGGGTGTGCGCCTCTGTTTGCCGATGAGGCACCCGTCGCACAGCTTGTTCACGCCTTTGATTTCTGGCAAGCCGTGCACCAACTCCTTCTTCTGCAGCTTTTCTAGGGCAGGAAAGTTTAAGTGTCCGTACCTTGCGTGCCACCTCCAAGATACCTCTTCGGTCTTGGCCGAGAGGCTGACGGGTTGGTCTATCTCTAACTCCAGGATGTAAAGACGGTTTGTCGTGCGCCTTGCCTGCGTGAGCAACCGTCGTTGATTATCGCAGATTTTGAGTAGTCCGCGCTCGATGGAAATGAAGCAACCTGTCTCATCGAGTTGACCCAGGCTCACAAGGTTAGCCTTGAGCCTCGGGATGAAGTAGACGTCGGTCAGCTTGCGATGCTCGCCTCCCTTACTGACGAACAGGATGGTGCCGCGCCCTTCGATCTCGACGACGGAGCCGTCGCCGAATTTCACCGTCCCACGGATCCCCGAGTCGAGCTCGGAGAACGCAGATCTAGCCCCGGTCATATGGTTTGTTGCCCCTGTGTCAAGGATCCATTGCCGGTGCTCGTGTTGCTCGTCCCTCTCGCCGATCTGAGCGAACACTCGCTCCTCCTCCAGTTGAATTGGCTCCCCAGCTGGTGCCATCTTTGCTACGCCCAACTGGAGCTCTTTCTTGGGTTCAACATCGTCGTCGGATTTGGAATCGAAACTGGGGACGCATGCAGTTACCATGAAGAGAGCTGGCTCGTCCTCCTCGGATTGAGCCACATGGGCCTTTTCGGCCTTCTCCTTATTCCTGAGCTTGCTCCAGCAATTTCTGCTCAGGTGTCCTCTCTTCCCACAGTTCGAGCATTGGATCGGCCTGCCATTGGTCGACTCCTTCTTTTGATTCCCATCTTTCCCACGCGTGCGCCCGTGGGACATCCATGGCTTCTTGCCGCCTTTGCGGCTGGAGGAGGACCCATTGCTCTCGCCGGTGTTGTCGCGGAGCTTTAGGCGTGCAAGCCATTCCTCCTCCGTGAGGAGTAGACGGCCCTCCTTGTCAACAGCTGAAGTGGTATTCTTCTTCCGCTGCTCAACGTTACGTAGTCTTCCGGTCACCTCTTCCACTGTTAGGTCGTTCACGTCAAGCAATGTCTCGATTGAAATCGCGACTTGCTCGAGGTGATCGGGGACGACCTGCAACATCTTCTTCACGATTTCTGTTTCGCTGATGCCACCACCGAGGGTGGTGATGCTGTTGGCGAGCCCCGTGATCCGCATTGAAAAATCATCGACGGATTCGCAGTCCTTAAAGCGAATCTCCGAGAGCTCCTTTCGCAGTTGCTCAATGTTGGATTCCCGCACACGCTGTACACCGACCCGACGGGATTTGATTCCCTCCCAGGCCGATTGTGCGGTGCGCTTGGTGGAAAGAGAAGCCAGCATCTCTCTGGGGGCACAGATCGTAATATGGCGGCGAACGCCAGCCGATCCTCCCGGTACTCGATCGTTTCTTCTTCCTCTGGCTCGACAGCGTGCCATAACCCTTGCGCCTGTAGGTTGACGCGCATCAACAAGGCCCACTCGTTGTAGTTGGACCTTGTCAACATCGGGTACTGAACGACGGCGGTCGTTGTCTCCCTGATCACTCGCTCAACGACAACTCGACGCCCGTCATCACGGCGTCGGCCTCTTCGTGGTGGTGATGGAGATGCCTGCACTTGACGGCGGCGTGGAGGAGTGAGCGAGCCTGCTCGGGATGGACCCCACGATGTGCTTATTTTCGCCCTTTGCATTTTCTTCTACTCGAACCTGAGACCTGTGTGTTGTTAGGTCGACACTCTAACCACTTGAGCTATTCAACTTGATTGTTGATAGGTTGGCTCTTCTGTGATGGTATACTACCGATCGCTTCAACGAGACTCTGATACCACTTGTTGACTCTGTCAATTCGGAAGACAGTGTCGACGAAAAATTGGCCGAAGGTTTCTTCGAAAGAAAAATTTGCGGAAGTAAAAGGAGAGAGAGAGTGAGAGATTTGCTGAAATTGCTGAAGACTCATGATTTTATTCGGTTTAAATAACAAATCTAATTACAAAAATAGAAAAATCAATTATACAAAAATAGAATAAGTGGACGAAGACTTCGCCCAAATTGCCATGGCTCCTATAATCACGCTCCTCCATTCGCGTGAATTTAGATGTTTTACAAACCTAACTAAATTAAGGCATGGCTTTTATTTAACAAAAAAACACCATGATGAAGCGTTCTGTGAGGATTCACTCTGAGAAGACTTGAAACAAGGCTTACCTCAGTCTTCTTCCCCTTCTTGTGGTAAGTAAAATTCTGGGTTTTGTATTTTGATTCCAATTTCCATTTTTCTGTTGTCATATTGAAGTGTTTGACATGATACGTTGGTAATTGATTGTATTAGGGAAATGTTGGGTTGATCTTCACAAAGGGTGATTTGAAGGAAGTCAGTGAAGAGGTGGCCAAATACAAGGTGTGCAGACTACTACTTGCTGTTCTTTTCGGTGTTTACATTGGATAGATATACTCTCTTAGTGTTCCATATAGATAATACTTCAATGGGATAACCACATTAAGTTTGAGATTCTAAGCGGCATTTTCTTTAACGCTGAATGATTAATTATTATTTTGAATCTTTCACATCATGCATTTATTCAATCATTTTGTTTTTGTTAATTTGCTTCAAATTCAACACATTCTATCCTTGAAGTTACTGTTTTGGTTTTGTATTGTCAATTAGATTGTTATTGTAGAATATACTCTCTTAGTGTTAATTTGCTTCAAAATCTGTCTCGTCACTTGAGTGTTTGGGCGGGCATTGATTTGATTGAGATCATGTACTATCCATTCTCTTCTTGTAATTTTTTCAAAATTTTCCATGAATTGGGTAGGGTGGATCTTTCTTCCTAGTATTAGATGTTTAGTCTGTGATATATCATTGAAGTTCAAGTGATTTTGTAAATTATGTAGGTTGGAGCGCCTGCTCGTGTTGGTTTGGTTGTCCCATTGATGTCATTGTTCCACCAGGCAACACAGGGCTTGATCCATCACAGACGTCCTTCTTCCAGGTTTGTAAATTTGATTACAAAGTAACCCACCAGTTTCCATGAATGATATCTGAGTTTTTTTTAATTCTTCGCCATACAGGTTCTTAACATTCCTACCTAGATTAACAAGGGTACTGTTGAAATTATCACTACCGTGGAGCTTATTAAGAAGGGTGAGAAGGTTGGATCTTCTGAGGCTGCTCTCCTTGCCAAGCTAGGAATTAGGCCATTCTCATATGGTCTGGTTGTTCTGTCTGCTTATGATAATGGTTCAGTCTTCAGCCCTGAGGTGCTTGATCTAACCGAGGACGATCTCCTCGAGAAGTTTGCCTTGGGTGTTTCCATGGTTACATCCTTGTCATTGGCCGTTTCATACCCAACTCTGGCTGCTGCACCACACATGCTCATCAATGCATACAAAAATCTTCTTGCTGTTGCAGTTGCCACCGACTACTCGTTCCCACAAGCCGAGAAAGTTAAGGAGTATCTCGAGGTACTGTCTCACATCTTTACAAAGTTCTTGCCTTTCTTTGAATCTATCTTGTTTGCTTTAGCTGCTGTTGCTGATACCTAG

mRNA sequence

ATGGTGAAATTTACCAAGGCTGAAAAAAAGGTCGCATACGACGTCAAGCTCTGCCAGCTTCTCGATGATTACAGTCAGGGAAATGTTGGGTTGATCTTCACAAAGGGTGATTTGAAGGAAGTCAGTGAAGAGGTGGCCAAATACAAGGTGTGCAGACTACTACTTGCTGTTCTTTTCGGTTGGAGCGCCTGCTCGTGTTGGTTTGGTTGTCCCATTGATGTCATTGTTCCACCAGGCAACACAGGGCTTGATCCATCACAGACGTCCTTCTTCCAGATTAACAAGGGTACTGTTGAAATTATCACTACCGTGGAGCTTATTAAGAAGGGTGAGAAGGTTGGATCTTCTGAGGCTGCTCTCCTTGCCAAGCTAGGAATTAGGCCATTCTCATATGGTCTGGTTGTTCTGTCTGCTTATGATAATGGTTCAGTCTTCAGCCCTGAGGTGCTTGATCTAACCGAGGACGATCTCCTCGAGAAGTTTGCCTTGGGTGTTTCCATGGTTACATCCTTGTCATTGGCCGTTTCATACCCAACTCTGGCTGCTGCACCACACATGCTCATCAATGCATACAAAAATCTTCTTGCTGTTGCAGTTGCCACCGACTACTCGTTCCCACAAGCCGAGAAAGTTAAGGAGTATCTCGAGGTACTGTCTCACATCTTTACAAAGTTCTTGCCTTTCTTTGAATCTATCTTGTTTGCTTTAGCTGCTGTTGCTGATACCTAG

Coding sequence (CDS)

ATGGTGAAATTTACCAAGGCTGAAAAAAAGGTCGCATACGACGTCAAGCTCTGCCAGCTTCTCGATGATTACAGTCAGGGAAATGTTGGGTTGATCTTCACAAAGGGTGATTTGAAGGAAGTCAGTGAAGAGGTGGCCAAATACAAGGTGTGCAGACTACTACTTGCTGTTCTTTTCGGTTGGAGCGCCTGCTCGTGTTGGTTTGGTTGTCCCATTGATGTCATTGTTCCACCAGGCAACACAGGGCTTGATCCATCACAGACGTCCTTCTTCCAGATTAACAAGGGTACTGTTGAAATTATCACTACCGTGGAGCTTATTAAGAAGGGTGAGAAGGTTGGATCTTCTGAGGCTGCTCTCCTTGCCAAGCTAGGAATTAGGCCATTCTCATATGGTCTGGTTGTTCTGTCTGCTTATGATAATGGTTCAGTCTTCAGCCCTGAGGTGCTTGATCTAACCGAGGACGATCTCCTCGAGAAGTTTGCCTTGGGTGTTTCCATGGTTACATCCTTGTCATTGGCCGTTTCATACCCAACTCTGGCTGCTGCACCACACATGCTCATCAATGCATACAAAAATCTTCTTGCTGTTGCAGTTGCCACCGACTACTCGTTCCCACAAGCCGAGAAAGTTAAGGAGTATCTCGAGGTACTGTCTCACATCTTTACAAAGTTCTTGCCTTTCTTTGAATCTATCTTGTTTGCTTTAGCTGCTGTTGCTGATACCTAG

Protein sequence

MVKFTKAEKKVAYDVKLCQLLDDYSQGNVGLIFTKGDLKEVSEEVAKYKVCRLLLAVLFGWSACSCWFGCPIDVIVPPGNTGLDPSQTSFFQINKGTVEIITTVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGSVFSPEVLDLTEDDLLEKFALGVSMVTSLSLAVSYPTLAAAPHMLINAYKNLLAVAVATDYSFPQAEKVKEYLEVLSHIFTKFLPFFESILFALAAVADT
Homology
[Close]
BLAST of Cp4.1LG01g05250 vs. Swiss-Prot
Match: RLA0_SOYBN (60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.5e-76
Identity = 154/197 (78.17%), Postives = 165/197 (83.76%), Query Frame = 1 

Query: 27  GNVGLIFTKGDLKEVSEEVAKYKVCRLLLAVLFGWSACSCWFGCPIDVIVPPGNTGLDPS 86
           GNVGLIFTKGDLKEVSEEVAKYKV           +        PIDV+VPPGNTGLDPS
Sbjct: 87  GNVGLIFTKGDLKEVSEEVAKYKV----------GAPARVGLVAPIDVVVPPGNTGLDPS 146

Query: 87  QTSFFQ-------INKGTVEIITTVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAY 146
           QTSFFQ       INKGTVEIIT VELI+KG+KVGSSEAALLAKLGIRPFSYGLVVLS Y
Sbjct: 147 QTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVLSVY 206

Query: 147 DNGSVFSPEVLDLTEDDLLEKFALGVSMVTSLSLAVSYPTLAAAPHMLINAYKNLLAVAV 206
           DNGSVFSPEVLDLTEDDL+ KFA GVSMVTSLSLA+SYPTLAAAPHM +NAYKN+LAVAV
Sbjct: 207 DNGSVFSPEVLDLTEDDLIGKFAAGVSMVTSLSLAISYPTLAAAPHMFVNAYKNVLAVAV 266

Query: 207 ATDYSFPQAEKVKEYLE 217
            TDYSFP+A+KVKEYL+
Sbjct: 267 ETDYSFPEADKVKEYLK 273

[Close]
BLAST of Cp4.1LG01g05250 vs. Swiss-Prot
Match: RLA03_ARATH (60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C PE=1 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 3.7e-75
Identity = 153/198 (77.27%), Postives = 164/198 (82.83%), Query Frame = 1 

Query: 26  QGNVGLIFTKGDLKEVSEEVAKYKVCRLLLAVLFGWSACSCWFGCPIDVIVPPGNTGLDP 85
           QGNVGLIFTKGDLKEVSEEVAKYKV           +        PIDV+V PGNTGLDP
Sbjct: 85  QGNVGLIFTKGDLKEVSEEVAKYKV----------GAPARVGLVAPIDVVVQPGNTGLDP 144

Query: 86  SQTSFFQ-------INKGTVEIITTVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSA 145
           SQTSFFQ       INKGTVEIIT VELIK+G+KVGSSEAALLAKLGIRPFSYGLVV S 
Sbjct: 145 SQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSV 204

Query: 146 YDNGSVFSPEVLDLTEDDLLEKFALGVSMVTSLSLAVSYPTLAAAPHMLINAYKNLLAVA 205
           YDNGSVFSPEVLDLTED L+EKFA G+SMVTSL+LAVSYPTLAAAPHM INAYKN LA+A
Sbjct: 205 YDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIA 264

Query: 206 VATDYSFPQAEKVKEYLE 217
           VATDY+FPQAEKVKE+L+
Sbjct: 265 VATDYTFPQAEKVKEFLK 272

[Close]
BLAST of Cp4.1LG01g05250 vs. Swiss-Prot
Match: RLA02_ARATH (60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana GN=RPP0B PE=1 SV=2)

HSP 1 Score: 282.7 bits (722), Expect = 3.7e-75
Identity = 153/198 (77.27%), Postives = 164/198 (82.83%), Query Frame = 1 

Query: 26  QGNVGLIFTKGDLKEVSEEVAKYKVCRLLLAVLFGWSACSCWFGCPIDVIVPPGNTGLDP 85
           QGNVGLIFTKGDLKEVSEEVAKYKV           +        PIDV+V PGNTGLDP
Sbjct: 85  QGNVGLIFTKGDLKEVSEEVAKYKV----------GAPARVGLVAPIDVVVQPGNTGLDP 144

Query: 86  SQTSFFQ-------INKGTVEIITTVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSA 145
           SQTSFFQ       INKGTVEIIT VELIK+G+KVGSSEAALLAKLGIRPFSYGLVV S 
Sbjct: 145 SQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSV 204

Query: 146 YDNGSVFSPEVLDLTEDDLLEKFALGVSMVTSLSLAVSYPTLAAAPHMLINAYKNLLAVA 205
           YDNGSVFSPEVLDLTED L+EKFA G+SMVTSL+LAVSYPTLAAAPHM INAYKN LA+A
Sbjct: 205 YDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIA 264

Query: 206 VATDYSFPQAEKVKEYLE 217
           VAT+Y+FPQAEKVKEYL+
Sbjct: 265 VATEYTFPQAEKVKEYLK 272

[Close]
BLAST of Cp4.1LG01g05250 vs. Swiss-Prot
Match: RLA01_ARATH (60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=1 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 5.4e-74
Identity = 149/198 (75.25%), Postives = 165/198 (83.33%), Query Frame = 1 

Query: 26  QGNVGLIFTKGDLKEVSEEVAKYKVCRLLLAVLFGWSACSCWFGCPIDVIVPPGNTGLDP 85
           QGNVGLIFTKGDLKEVSEEVAKYKV           +        PIDV+V PGNTGLDP
Sbjct: 86  QGNVGLIFTKGDLKEVSEEVAKYKV----------GAPARVGLVAPIDVVVQPGNTGLDP 145

Query: 86  SQTSFFQ-------INKGTVEIITTVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSA 145
           SQTSFFQ       INKGTVEIIT VELIKKG+KVGSSEAALLAKLGIRPFSYGLVV S 
Sbjct: 146 SQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESV 205

Query: 146 YDNGSVFSPEVLDLTEDDLLEKFALGVSMVTSLSLAVSYPTLAAAPHMLINAYKNLLAVA 205
           YDNGSVF+PEVL+LTEDDL+EKFA GVSM+T+LSLA+SYPT+AAAPHM +NAYKN+LAVA
Sbjct: 206 YDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAVA 265

Query: 206 VATDYSFPQAEKVKEYLE 217
           +AT+YSFPQAE VKE+L+
Sbjct: 266 LATEYSFPQAENVKEFLK 273

[Close]
BLAST of Cp4.1LG01g05250 vs. Swiss-Prot
Match: RLA0_ORYSJ (60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 PE=1 SV=3)

HSP 1 Score: 272.3 bits (695), Expect = 5.0e-72
Identity = 142/197 (72.08%), Postives = 161/197 (81.73%), Query Frame = 1 

Query: 27  GNVGLIFTKGDLKEVSEEVAKYKVCRLLLAVLFGWSACSCWFGCPIDVIVPPGNTGLDPS 86
           GNVGLIFTKGDLKEV EEVAKYKV           +        P+DV+VPPGNTGLDPS
Sbjct: 87  GNVGLIFTKGDLKEVREEVAKYKV----------GAPARVGLVAPVDVVVPPGNTGLDPS 146

Query: 87  QTSFFQ-------INKGTVEIITTVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAY 146
           QTSFFQ       INKGTVEIIT VELIKKG+KVGSSE+ALLAKLGIRPFSYGLV+ + Y
Sbjct: 147 QTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVY 206

Query: 147 DNGSVFSPEVLDLTEDDLLEKFALGVSMVTSLSLAVSYPTLAAAPHMLINAYKNLLAVAV 206
           D+GSVFSPEVLDLTEDDL+EKFA GVSMV S+SLA+SYPT+AAAPHM +N YKN+LAVAV
Sbjct: 207 DSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAV 266

Query: 207 ATDYSFPQAEKVKEYLE 217
            T+YS+P A+K+KEYL+
Sbjct: 267 ETEYSYPHADKIKEYLK 273

[Close]
BLAST of Cp4.1LG01g05250 vs. TrEMBL
Match: M0S9B9_MUSAM (60S acidic ribosomal protein P0 OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 2.9e-82
Identity = 174/250 (69.60%), Postives = 188/250 (75.20%), Query Frame = 1 

Query: 2   VKFTKAEKKVAYDVKLCQLLDDYSQ----------------------------GNVGLIF 61
           VK +KAEKKV YD KLC LLD+YS+                            GNVGLIF
Sbjct: 3   VKLSKAEKKVVYDKKLCSLLDEYSKNTLIRRCIRIHAEKTGNKNYLNLLPLLVGNVGLIF 62

Query: 62  TKGDLKEVSEEVAKYKVCRLLLAVLFGWSACSCWFGCPIDVIVPPGNTGLDPSQTSFFQ- 121
           TKGDLKEVSEEVAKYKV           +        PIDV+VPPGNTGLDPSQTSFFQ 
Sbjct: 63  TKGDLKEVSEEVAKYKV----------GAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQV 122

Query: 122 ------INKGTVEIITTVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGSVFS 181
                 INKGTVEIIT VELIKKGEKVGSSEAALLAKLGIRPFSYGLV+LS YDNGSVFS
Sbjct: 123 LNIPTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVILSVYDNGSVFS 182

Query: 182 PEVLDLTEDDLLEKFALGVSMVTSLSLAVSYPTLAAAPHMLINAYKNLLAVAVATDYSFP 217
           PEVLDL+EDDL+EKFA G+SMVTSLSLAVSYPTLAAAPHM INAYKN+LAVA+AT+Y+FP
Sbjct: 183 PEVLDLSEDDLIEKFAAGISMVTSLSLAVSYPTLAAAPHMFINAYKNVLAVAIATEYTFP 242

[Close]
BLAST of Cp4.1LG01g05250 vs. TrEMBL
Match: A8MQR4_ARATH (60S acidic ribosomal protein P0 OS=Arabidopsis thaliana GN=At3g09200 PE=1 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 5.4e-81
Identity = 172/249 (69.08%), Postives = 187/249 (75.10%), Query Frame = 1 

Query: 1   MVKFTKAEKKVAYDVKLCQLLDDYSQ--------------------------GNVGLIFT 60
           MVK TKAEKK+AYD KLCQL+D+Y+Q                          GNVGLIFT
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVRSVRIHSENTGNTAILNLLPLLQGNVGLIFT 60

Query: 61  KGDLKEVSEEVAKYKVCRLLLAVLFGWSACSCWFGCPIDVIVPPGNTGLDPSQTSFFQ-- 120
           KGDLKEVSEEVAKYKV           +        PIDV+V PGNTGLDPSQTSFFQ  
Sbjct: 61  KGDLKEVSEEVAKYKV----------GAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVL 120

Query: 121 -----INKGTVEIITTVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGSVFSP 180
                INKGTVEIIT VELIK+G+KVGSSEAALLAKLGIRPFSYGLVV S YDNGSVFSP
Sbjct: 121 NIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSP 180

Query: 181 EVLDLTEDDLLEKFALGVSMVTSLSLAVSYPTLAAAPHMLINAYKNLLAVAVATDYSFPQ 217
           EVLDLTED L+EKFA G+SMVTSL+LAVSYPTLAAAPHM INAYKN LA+AVAT+Y+FPQ
Sbjct: 181 EVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATEYTFPQ 239

[Close]
BLAST of Cp4.1LG01g05250 vs. TrEMBL
Match: A0A0A0KM27_CUCSA (60S acidic ribosomal protein P0 OS=Cucumis sativus GN=Csa_5G199310 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 2.5e-78
Identity = 164/196 (83.67%), Postives = 168/196 (85.71%), Query Frame = 1 

Query: 27  GNVGLIFTKGDLKEVSEEVAKYKVCRLLLAVLFGWSACSCWFGCPIDVIVPPGNTGLDPS 86
           GNVGLIFTKGDLKEVSEEVAKYKV           +        PIDVIVPPGNTGLDPS
Sbjct: 87  GNVGLIFTKGDLKEVSEEVAKYKV----------GAPARVGLVAPIDVIVPPGNTGLDPS 146

Query: 87  QTSFFQ-------INKGTVEIITTVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAY 146
           QTSFFQ       INKGTVEIIT VELIKKG+KVGSSEAALLAKLGIRPFSYGLVVLS Y
Sbjct: 147 QTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVY 206

Query: 147 DNGSVFSPEVLDLTEDDLLEKFALGVSMVTSLSLAVSYPTLAAAPHMLINAYKNLLAVAV 206
           DNGSVFSP+VLDLTEDDLLEKFALGVSMVTSLSLA+SYPTLAAAPHMLINAYKNLLAVAV
Sbjct: 207 DNGSVFSPQVLDLTEDDLLEKFALGVSMVTSLSLAISYPTLAAAPHMLINAYKNLLAVAV 266

Query: 207 ATDYSFPQAEKVKEYL 216
           ATDYSFPQAEKVKEYL
Sbjct: 267 ATDYSFPQAEKVKEYL 272

[Close]
BLAST of Cp4.1LG01g05250 vs. TrEMBL
Match: M7Z059_TRIUA (60S acidic ribosomal protein P0 OS=Triticum urartu GN=TRIUR3_26724 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 3.3e-78
Identity = 158/221 (71.49%), Postives = 180/221 (81.45%), Query Frame = 1 

Query: 3   KFTKAEKKVAYDVKLCQLLDDYSQGNVGLIFTKGDLKEVSEEVAKYKVCRLLLAVLFGWS 62
           K +K +KK AYD KLCQLLD+YS+GNVGLIFTKGDLKEV EEVAKYKV       L    
Sbjct: 5   KPSKTDKKHAYDQKLCQLLDEYSRGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLIA-- 64

Query: 63  ACSCWFGCPIDVIVPPGNTGLDPSQTSFFQ-------INKGTVEIITTVELIKKGEKVGS 122
                   PIDV+VPPGNTGLDPSQTSFFQ       INKG+VEI+  V+LIKKG+KVGS
Sbjct: 65  --------PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGSVEIVAHVDLIKKGDKVGS 124

Query: 123 SEAALLAKLGIRPFSYGLVVLSAYDNGSVFSPEVLDLTEDDLLEKFALGVSMVTSLSLAV 182
           SEAALLAKLGIRPFSYGLV+ + YD+GSVFSPEVLDLTE+DL+EKFA GVSMV SLSLAV
Sbjct: 125 SEAALLAKLGIRPFSYGLVITNVYDDGSVFSPEVLDLTEEDLMEKFACGVSMVASLSLAV 184

Query: 183 SYPTLAAAPHMLINAYKNLLAVAVATDYSFPQAEKVKEYLE 217
           SYPTLAAAPHM +N YKN+LA+AV T+YSFP A+++KEYL+
Sbjct: 185 SYPTLAAAPHMFLNGYKNVLALAVETEYSFPHADQIKEYLK 215

[Close]
BLAST of Cp4.1LG01g05250 vs. TrEMBL
Match: A0A067L8U4_JATCU (60S acidic ribosomal protein P0 OS=Jatropha curcas GN=JCGZ_01312 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 1.1e-76
Identity = 160/198 (80.81%), Postives = 168/198 (84.85%), Query Frame = 1 

Query: 26  QGNVGLIFTKGDLKEVSEEVAKYKVCRLLLAVLFGWSACSCWFGCPIDVIVPPGNTGLDP 85
           QGNVGLIFTKGDLKEVSEEVAKYKV           +        PIDV+VPPGNTGLDP
Sbjct: 86  QGNVGLIFTKGDLKEVSEEVAKYKV----------GAPARVGLVAPIDVVVPPGNTGLDP 145

Query: 86  SQTSFFQ-------INKGTVEIITTVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSA 145
           SQTSFFQ       INKGTVEIIT VELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLS 
Sbjct: 146 SQTSFFQVLNIPTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSV 205

Query: 146 YDNGSVFSPEVLDLTEDDLLEKFALGVSMVTSLSLAVSYPTLAAAPHMLINAYKNLLAVA 205
           YDNGSVFSPEVLDLTEDDL+EKFA GVSMVTSL+LAVSYPTLAAAP+M INAYKN+LAV+
Sbjct: 206 YDNGSVFSPEVLDLTEDDLVEKFATGVSMVTSLALAVSYPTLAAAPYMFINAYKNVLAVS 265

Query: 206 VATDYSFPQAEKVKEYLE 217
           VATDY+FPQAEKVKEYLE
Sbjct: 266 VATDYTFPQAEKVKEYLE 273

[Close]
BLAST of Cp4.1LG01g05250 vs. TAIR10
Match: AT3G09200.1 (AT3G09200.1 Ribosomal protein L10 family protein)

HSP 1 Score: 282.7 bits (722), Expect = 2.1e-76
Identity = 153/198 (77.27%), Postives = 164/198 (82.83%), Query Frame = 1 

Query: 26  QGNVGLIFTKGDLKEVSEEVAKYKVCRLLLAVLFGWSACSCWFGCPIDVIVPPGNTGLDP 85
           QGNVGLIFTKGDLKEVSEEVAKYKV           +        PIDV+V PGNTGLDP
Sbjct: 85  QGNVGLIFTKGDLKEVSEEVAKYKV----------GAPARVGLVAPIDVVVQPGNTGLDP 144

Query: 86  SQTSFFQ-------INKGTVEIITTVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSA 145
           SQTSFFQ       INKGTVEIIT VELIK+G+KVGSSEAALLAKLGIRPFSYGLVV S 
Sbjct: 145 SQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSV 204

Query: 146 YDNGSVFSPEVLDLTEDDLLEKFALGVSMVTSLSLAVSYPTLAAAPHMLINAYKNLLAVA 205
           YDNGSVFSPEVLDLTED L+EKFA G+SMVTSL+LAVSYPTLAAAPHM INAYKN LA+A
Sbjct: 205 YDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIA 264

Query: 206 VATDYSFPQAEKVKEYLE 217
           VAT+Y+FPQAEKVKEYL+
Sbjct: 265 VATEYTFPQAEKVKEYLK 272

[Close]
BLAST of Cp4.1LG01g05250 vs. TAIR10
Match: AT3G11250.1 (AT3G11250.1 Ribosomal protein L10 family protein)

HSP 1 Score: 282.7 bits (722), Expect = 2.1e-76
Identity = 153/198 (77.27%), Postives = 164/198 (82.83%), Query Frame = 1 

Query: 26  QGNVGLIFTKGDLKEVSEEVAKYKVCRLLLAVLFGWSACSCWFGCPIDVIVPPGNTGLDP 85
           QGNVGLIFTKGDLKEVSEEVAKYKV           +        PIDV+V PGNTGLDP
Sbjct: 85  QGNVGLIFTKGDLKEVSEEVAKYKV----------GAPARVGLVAPIDVVVQPGNTGLDP 144

Query: 86  SQTSFFQ-------INKGTVEIITTVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSA 145
           SQTSFFQ       INKGTVEIIT VELIK+G+KVGSSEAALLAKLGIRPFSYGLVV S 
Sbjct: 145 SQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSV 204

Query: 146 YDNGSVFSPEVLDLTEDDLLEKFALGVSMVTSLSLAVSYPTLAAAPHMLINAYKNLLAVA 205
           YDNGSVFSPEVLDLTED L+EKFA G+SMVTSL+LAVSYPTLAAAPHM INAYKN LA+A
Sbjct: 205 YDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIA 264

Query: 206 VATDYSFPQAEKVKEYLE 217
           VATDY+FPQAEKVKE+L+
Sbjct: 265 VATDYTFPQAEKVKEFLK 272

[Close]
BLAST of Cp4.1LG01g05250 vs. TAIR10
Match: AT2G40010.1 (AT2G40010.1 Ribosomal protein L10 family protein)

HSP 1 Score: 278.9 bits (712), Expect = 3.0e-75
Identity = 149/198 (75.25%), Postives = 165/198 (83.33%), Query Frame = 1 

Query: 26  QGNVGLIFTKGDLKEVSEEVAKYKVCRLLLAVLFGWSACSCWFGCPIDVIVPPGNTGLDP 85
           QGNVGLIFTKGDLKEVSEEVAKYKV           +        PIDV+V PGNTGLDP
Sbjct: 86  QGNVGLIFTKGDLKEVSEEVAKYKV----------GAPARVGLVAPIDVVVQPGNTGLDP 145

Query: 86  SQTSFFQ-------INKGTVEIITTVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSA 145
           SQTSFFQ       INKGTVEIIT VELIKKG+KVGSSEAALLAKLGIRPFSYGLVV S 
Sbjct: 146 SQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESV 205

Query: 146 YDNGSVFSPEVLDLTEDDLLEKFALGVSMVTSLSLAVSYPTLAAAPHMLINAYKNLLAVA 205
           YDNGSVF+PEVL+LTEDDL+EKFA GVSM+T+LSLA+SYPT+AAAPHM +NAYKN+LAVA
Sbjct: 206 YDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAVA 265

Query: 206 VATDYSFPQAEKVKEYLE 217
           +AT+YSFPQAE VKE+L+
Sbjct: 266 LATEYSFPQAENVKEFLK 273

[Close]
BLAST of Cp4.1LG01g05250 vs. NCBI nr
Match: gi|297736637|emb|CBI25508.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 313.9 bits (803), Expect = 2.4e-82
Identity = 177/253 (69.96%), Postives = 190/253 (75.10%), Query Frame = 1 

Query: 2   VKFTKAEKKVAYDVKLCQLLDDYSQ-------------------------------GNVG 61
           VK +KA+KK+AYD KLCQLLD+YSQ                               GNVG
Sbjct: 3   VKPSKADKKIAYDQKLCQLLDEYSQILIAAADNRSIRLHAEKTGNTAFLNLIPLLVGNVG 62

Query: 62  LIFTKGDLKEVSEEVAKYKVCRLLLAVLFGWSACSCWFGCPIDVIVPPGNTGLDPSQTSF 121
           LIFTKGDLKEVSEEVAKYKV           +        PIDVIVPPGNTGLDPSQTSF
Sbjct: 63  LIFTKGDLKEVSEEVAKYKV----------GAPARVGLVAPIDVIVPPGNTGLDPSQTSF 122

Query: 122 FQ-------INKGTVEIITTVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGS 181
           FQ       INKGTVEIIT VELIKKG+KVGSSEAALLAKLGIRPFSYGLVVLS YDNGS
Sbjct: 123 FQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGS 182

Query: 182 VFSPEVLDLTEDDLLEKFALGVSMVTSLSLAVSYPTLAAAPHMLINAYKNLLAVAVATDY 217
           VFSPEVLDLTE+DL+EKFA GVSMVTSLSLA+SYPTLAAAPHM INAYKN+LAVAVAT+Y
Sbjct: 183 VFSPEVLDLTEEDLIEKFAAGVSMVTSLSLAISYPTLAAAPHMFINAYKNVLAVAVATEY 242

[Close]
BLAST of Cp4.1LG01g05250 vs. NCBI nr
Match: gi|145332006|ref|NP_001078125.1| (60S acidic ribosomal protein P0-2 [Arabidopsis thaliana])

HSP 1 Score: 308.9 bits (790), Expect = 7.7e-81
Identity = 172/249 (69.08%), Postives = 187/249 (75.10%), Query Frame = 1 

Query: 1   MVKFTKAEKKVAYDVKLCQLLDDYSQ--------------------------GNVGLIFT 60
           MVK TKAEKK+AYD KLCQL+D+Y+Q                          GNVGLIFT
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVRSVRIHSENTGNTAILNLLPLLQGNVGLIFT 60

Query: 61  KGDLKEVSEEVAKYKVCRLLLAVLFGWSACSCWFGCPIDVIVPPGNTGLDPSQTSFFQ-- 120
           KGDLKEVSEEVAKYKV           +        PIDV+V PGNTGLDPSQTSFFQ  
Sbjct: 61  KGDLKEVSEEVAKYKV----------GAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVL 120

Query: 121 -----INKGTVEIITTVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGSVFSP 180
                INKGTVEIIT VELIK+G+KVGSSEAALLAKLGIRPFSYGLVV S YDNGSVFSP
Sbjct: 121 NIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSP 180

Query: 181 EVLDLTEDDLLEKFALGVSMVTSLSLAVSYPTLAAAPHMLINAYKNLLAVAVATDYSFPQ 217
           EVLDLTED L+EKFA G+SMVTSL+LAVSYPTLAAAPHM INAYKN LA+AVAT+Y+FPQ
Sbjct: 181 EVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATEYTFPQ 239

[Close]
BLAST of Cp4.1LG01g05250 vs. NCBI nr
Match: gi|296086050|emb|CBI31491.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 308.9 bits (790), Expect = 7.7e-81
Identity = 172/253 (67.98%), Postives = 190/253 (75.10%), Query Frame = 1 

Query: 2   VKFTKAEKKVAYDVKLCQLLDDYSQ-------------------------------GNVG 61
           VK +KA+KK+AYD KLCQLLD+Y+Q                               GNVG
Sbjct: 3   VKPSKADKKIAYDQKLCQLLDEYTQILIAAADNRSIRLHAEKTGNQAFLNLIPLLVGNVG 62

Query: 62  LIFTKGDLKEVSEEVAKYKVCRLLLAVLFGWSACSCWFGCPIDVIVPPGNTGLDPSQTSF 121
           LIFT+GDLKEVSEEVAKYKV           +        PIDVIVPPGNTGLDPSQTSF
Sbjct: 63  LIFTRGDLKEVSEEVAKYKV----------GAPARVGLVAPIDVIVPPGNTGLDPSQTSF 122

Query: 122 FQ-------INKGTVEIITTVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAYDNGS 181
           FQ       INKGTVEIIT VELI+KG+KVGSSEAALLAKLGIRPFSYGLVVLS YDNGS
Sbjct: 123 FQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGS 182

Query: 182 VFSPEVLDLTEDDLLEKFALGVSMVTSLSLAVSYPTLAAAPHMLINAYKNLLAVAVATDY 217
           VFSPEVLDLTE+DL+EKFA GVSMVTSLSLA+SYPTLAAAPHM +NAYKN+L+VAVATDY
Sbjct: 183 VFSPEVLDLTEEDLMEKFAAGVSMVTSLSLAISYPTLAAAPHMFVNAYKNVLSVAVATDY 242

[Close]
BLAST of Cp4.1LG01g05250 vs. NCBI nr
Match: gi|449463036|ref|XP_004149240.1| (PREDICTED: 60S acidic ribosomal protein P0 [Cucumis sativus])

HSP 1 Score: 300.1 bits (767), Expect = 3.6e-78
Identity = 164/196 (83.67%), Postives = 168/196 (85.71%), Query Frame = 1 

Query: 27  GNVGLIFTKGDLKEVSEEVAKYKVCRLLLAVLFGWSACSCWFGCPIDVIVPPGNTGLDPS 86
           GNVGLIFTKGDLKEVSEEVAKYKV           +        PIDVIVPPGNTGLDPS
Sbjct: 87  GNVGLIFTKGDLKEVSEEVAKYKV----------GAPARVGLVAPIDVIVPPGNTGLDPS 146

Query: 87  QTSFFQ-------INKGTVEIITTVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVLSAY 146
           QTSFFQ       INKGTVEIIT VELIKKG+KVGSSEAALLAKLGIRPFSYGLVVLS Y
Sbjct: 147 QTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVY 206

Query: 147 DNGSVFSPEVLDLTEDDLLEKFALGVSMVTSLSLAVSYPTLAAAPHMLINAYKNLLAVAV 206
           DNGSVFSP+VLDLTEDDLLEKFALGVSMVTSLSLA+SYPTLAAAPHMLINAYKNLLAVAV
Sbjct: 207 DNGSVFSPQVLDLTEDDLLEKFALGVSMVTSLSLAISYPTLAAAPHMLINAYKNLLAVAV 266

Query: 207 ATDYSFPQAEKVKEYL 216
           ATDYSFPQAEKVKEYL
Sbjct: 267 ATDYSFPQAEKVKEYL 272

[Close]
BLAST of Cp4.1LG01g05250 vs. NCBI nr
Match: gi|474019768|gb|EMS52841.1| (60S acidic ribosomal protein P0 [Triticum urartu])

HSP 1 Score: 299.7 bits (766), Expect = 4.7e-78
Identity = 158/221 (71.49%), Postives = 180/221 (81.45%), Query Frame = 1 

Query: 3   KFTKAEKKVAYDVKLCQLLDDYSQGNVGLIFTKGDLKEVSEEVAKYKVCRLLLAVLFGWS 62
           K +K +KK AYD KLCQLLD+YS+GNVGLIFTKGDLKEV EEVAKYKV       L    
Sbjct: 5   KPSKTDKKHAYDQKLCQLLDEYSRGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLIA-- 64

Query: 63  ACSCWFGCPIDVIVPPGNTGLDPSQTSFFQ-------INKGTVEIITTVELIKKGEKVGS 122
                   PIDV+VPPGNTGLDPSQTSFFQ       INKG+VEI+  V+LIKKG+KVGS
Sbjct: 65  --------PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGSVEIVAHVDLIKKGDKVGS 124

Query: 123 SEAALLAKLGIRPFSYGLVVLSAYDNGSVFSPEVLDLTEDDLLEKFALGVSMVTSLSLAV 182
           SEAALLAKLGIRPFSYGLV+ + YD+GSVFSPEVLDLTE+DL+EKFA GVSMV SLSLAV
Sbjct: 125 SEAALLAKLGIRPFSYGLVITNVYDDGSVFSPEVLDLTEEDLMEKFACGVSMVASLSLAV 184

Query: 183 SYPTLAAAPHMLINAYKNLLAVAVATDYSFPQAEKVKEYLE 217
           SYPTLAAAPHM +N YKN+LA+AV T+YSFP A+++KEYL+
Sbjct: 185 SYPTLAAAPHMFLNGYKNVLALAVETEYSFPHADQIKEYLK 215

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g05250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RLA0_SOYBN1.5e-7678.1760S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1[more]
RLA03_ARATH3.7e-7577.2760S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C PE=1 SV=1[more]
RLA02_ARATH3.7e-7577.2760S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana GN=RPP0B PE=1 SV=2[more]
RLA01_ARATH5.4e-7475.2560S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=1 SV=1[more]
RLA0_ORYSJ5.0e-7272.0860S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 ... [more]
BLAST of Cp4.1LG01g05250 vs. TrEMBL
Match NameE-valueIdentityDescription
M0S9B9_MUSAM2.9e-8269.6060S acidic ribosomal protein P0 OS=Musa acuminata subsp. malaccensis PE=3 SV=1[more]
A8MQR4_ARATH5.4e-8169.0860S acidic ribosomal protein P0 OS=Arabidopsis thaliana GN=At3g09200 PE=1 SV=1[more]
A0A0A0KM27_CUCSA2.5e-7883.6760S acidic ribosomal protein P0 OS=Cucumis sativus GN=Csa_5G199310 PE=3 SV=1[more]
M7Z059_TRIUA3.3e-7871.4960S acidic ribosomal protein P0 OS=Triticum urartu GN=TRIUR3_26724 PE=4 SV=1[more]
A0A067L8U4_JATCU1.1e-7680.8160S acidic ribosomal protein P0 OS=Jatropha curcas GN=JCGZ_01312 PE=3 SV=1[more]
BLAST of Cp4.1LG01g05250 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G09200.12.1e-7677.27 Ribosomal protein L10 family protein[more]
AT3G11250.12.1e-7677.27 Ribosomal protein L10 family protein[more]
AT2G40010.13.0e-7575.25 Ribosomal protein L10 family protein[more]
BLAST of Cp4.1LG01g05250 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|297736637|emb|CBI25508.3|2.4e-8269.96unnamed protein product [Vitis vinifera][more]
gi|145332006|ref|NP_001078125.1|7.7e-8169.0860S acidic ribosomal protein P0-2 [Arabidopsis thaliana][more]
gi|296086050|emb|CBI31491.3|7.7e-8167.98unnamed protein product [Vitis vinifera][more]
gi|449463036|ref|XP_004149240.1|3.6e-7883.67PREDICTED: 60S acidic ribosomal protein P0 [Cucumis sativus][more]
gi|474019768|gb|EMS52841.1|4.7e-7871.4960S acidic ribosomal protein P0 [Triticum urartu][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006284 base-excision repair
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003674 molecular_function
molecular_function GO:0003906 DNA-(apurinic or apyrimidinic site) lyase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g05250.1Cp4.1LG01g05250.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR2114160S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBERcoord: 19..152
score: 3.5
NoneNo IPR availablePANTHERPTHR21141:SF360S ACIDIC RIBOSOMAL PROTEIN P0coord: 19..152
score: 3.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g05250Cucsa.368670Cucumber (Gy14) v1cgycpeB0979
Cp4.1LG01g05250CmaCh04G001620Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g05250CmaCh04G011250Cucurbita maxima (Rimu)cmacpeB723
Cp4.1LG01g05250CmoCh04G011920Cucurbita moschata (Rifu)cmocpeB675
Cp4.1LG01g05250CmoCh04G001620Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g05250Cla004337Watermelon (97103) v1cpewmB418
Cp4.1LG01g05250Csa5G199310Cucumber (Chinese Long) v2cpecuB438
Cp4.1LG01g05250MELO3C025168Melon (DHL92) v3.5.1cpemeB381
Cp4.1LG01g05250ClCG07G004060Watermelon (Charleston Gray)cpewcgB410
Cp4.1LG01g05250CSPI05G10510Wild cucumber (PI 183967)cpecpiB438
Cp4.1LG01g05250Lsi04G009640Bottle gourd (USVL1VR-Ls)cpelsiB359
Cp4.1LG01g05250MELO3C025168.2Melon (DHL92) v3.6.1cpemedB440
Cp4.1LG01g05250CsaV3_5G008980Cucumber (Chinese Long) v3cpecucB0542
Cp4.1LG01g05250Bhi07G000523Wax gourdcpewgoB0554
Cp4.1LG01g05250CsGy5G007830Cucumber (Gy14) v2cgybcpeB647
Cp4.1LG01g05250Carg00229Silver-seed gourdcarcpeB0939
Cp4.1LG01g05250Carg18361Silver-seed gourdcarcpeB0130
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g05250Cp4.1LG01g11130Cucurbita pepo (Zucchini)cpecpeB374
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g05250Watermelon (Charleston Gray)cpewcgB363
Cp4.1LG01g05250Cucurbita pepo (Zucchini)cpecpeB072
Cp4.1LG01g05250Cucurbita pepo (Zucchini)cpecpeB204
Cp4.1LG01g05250Cucurbita pepo (Zucchini)cpecpeB377
Cp4.1LG01g05250Cucurbita pepo (Zucchini)cpecpeB401
Cp4.1LG01g05250Cucurbita pepo (Zucchini)cpecpeB394
Cp4.1LG01g05250Cucumber (Gy14) v1cgycpeB0366
Cp4.1LG01g05250Cucurbita maxima (Rimu)cmacpeB322
Cp4.1LG01g05250Cucurbita maxima (Rimu)cmacpeB730
Cp4.1LG01g05250Cucurbita maxima (Rimu)cmacpeB828
Cp4.1LG01g05250Cucurbita moschata (Rifu)cmocpeB284
Cp4.1LG01g05250Cucurbita moschata (Rifu)cmocpeB582
Cp4.1LG01g05250Cucurbita moschata (Rifu)cmocpeB683
Cp4.1LG01g05250Cucurbita moschata (Rifu)cmocpeB781
Cp4.1LG01g05250Wild cucumber (PI 183967)cpecpiB469
Cp4.1LG01g05250Cucumber (Chinese Long) v2cpecuB467
Cp4.1LG01g05250Bottle gourd (USVL1VR-Ls)cpelsiB318
Cp4.1LG01g05250Bottle gourd (USVL1VR-Ls)cpelsiB343
Cp4.1LG01g05250Bottle gourd (USVL1VR-Ls)cpelsiB349
Cp4.1LG01g05250Watermelon (Charleston Gray)cpewcgB354
Cp4.1LG01g05250Watermelon (97103) v1cpewmB392
Cp4.1LG01g05250Watermelon (97103) v1cpewmB467
Cp4.1LG01g05250Melon (DHL92) v3.5.1cpemeB405
Cp4.1LG01g05250Cucumber (Gy14) v2cgybcpeB368
Cp4.1LG01g05250Cucumber (Gy14) v2cgybcpeB510
Cp4.1LG01g05250Cucumber (Gy14) v2cgybcpeB795
Cp4.1LG01g05250Cucumber (Gy14) v2cgybcpeB806
Cp4.1LG01g05250Melon (DHL92) v3.6.1cpemedB451
Cp4.1LG01g05250Melon (DHL92) v3.6.1cpemedB471
Cp4.1LG01g05250Melon (DHL92) v3.6.1cpemedB477
Cp4.1LG01g05250Silver-seed gourdcarcpeB0376
Cp4.1LG01g05250Silver-seed gourdcarcpeB0467
Cp4.1LG01g05250Silver-seed gourdcarcpeB1387
Cp4.1LG01g05250Cucumber (Chinese Long) v3cpecucB0490
Cp4.1LG01g05250Cucumber (Chinese Long) v3cpecucB0566
Cp4.1LG01g05250Cucumber (Chinese Long) v3cpecucB0577
Cp4.1LG01g05250Wax gourdcpewgoB0482
Cp4.1LG01g05250Wax gourdcpewgoB0532
Cp4.1LG01g05250Wax gourdcpewgoB0543