Cp4.1LG01g04930 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g04930
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 984102 .. 984317 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGAGGAAAAGAAGGATATCTGCCGCACGCCGCGACGGAAGAGCTGCCGGATTCCGGTGGCGATGTTGTGCCCGGCAGCGCCGAGGAAGAAGTCGGTTAGCTTGAAGCGCAAGGCTCCGCCGAAGGACGGGTACTTTCGGCCGCCGGATTTGGAGGTGTTGTTCGGCTTTGTTGCTCCAACAGGAGATGTATATGTACATAATAATGTTTGA

mRNA sequence

ATGGCTGAGGAAAAGAAGGATATCTGCCGCACGCCGCGACGGAAGAGCTGCCGGATTCCGGTGGCGATGTTGTGCCCGGCAGCGCCGAGGAAGAAGTCGGTTAGCTTGAAGCGCAAGGCTCCGCCGAAGGACGGGTACTTTCGGCCGCCGGATTTGGAGGTGTTGTTCGGCTTTGTTGCTCCAACAGGAGATGTATATGTACATAATAATGTTTGA

Coding sequence (CDS)

ATGGCTGAGGAAAAGAAGGATATCTGCCGCACGCCGCGACGGAAGAGCTGCCGGATTCCGGTGGCGATGTTGTGCCCGGCAGCGCCGAGGAAGAAGTCGGTTAGCTTGAAGCGCAAGGCTCCGCCGAAGGACGGGTACTTTCGGCCGCCGGATTTGGAGGTGTTGTTCGGCTTTGTTGCTCCAACAGGAGATGTATATGTACATAATAATGTTTGA

Protein sequence

MAEEKKDICRTPRRKSCRIPVAMLCPAAPRKKSVSLKRKAPPKDGYFRPPDLEVLFGFVAPTGDVYVHNNV
Homology
[Close]
BLAST of Cp4.1LG01g04930 vs. TrEMBL
Match: A0A0A0KS84_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G182660 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-20
Identity = 49/61 (80.33%), Postives = 54/61 (88.52%), Query Frame = 1 

Query: 1  MAEEKKDICRTPRRKSCRIPVAMLCPAAPRKKSVSLKRKAPPKDGYFRPPDLEVLFGFVA 60
          MAEE  ++CRTPRR+SCRIPVAM CP+APRKK V LKRKAPPK+GYFR PDLEVLFGFV 
Sbjct: 1  MAEETVELCRTPRRRSCRIPVAMACPSAPRKKPVCLKRKAPPKEGYFRSPDLEVLFGFVT 60

Query: 61 P 62
          P
Sbjct: 61 P 61

[Close]
BLAST of Cp4.1LG01g04930 vs. TrEMBL
Match: I1M847_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G067700 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-10
Identity = 34/68 (50.00%), Postives = 51/68 (75.00%), Query Frame = 1 

Query: 1  MAEEKKDICRTPRRKSCRIPVAMLCPAAPRKKSV--SLKRKAPPKDGYFRPPDLEVLFGF 60
          M ++ ++ CRTP+R +CRIP AM+CP  P+KKS   + +++ PPK+GYF PPDLE++F  
Sbjct: 1  MVKDIEEGCRTPKRSACRIPAAMVCPPPPKKKSAAYTARQRVPPKNGYFVPPDLELIFR- 60

Query: 61 VAPTGDVY 67
          VAPT + +
Sbjct: 61 VAPTREAF 67

[Close]
BLAST of Cp4.1LG01g04930 vs. TrEMBL
Match: G7KBS4_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_5g080040 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-10
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 1 

Query: 1  MAEEKKDICRTPRRKSCRIPVAMLCPAAPRKKSV--SLKRKAPPKDGYFRPPDLEVLF 57
          M  + ++ CRTP+   CRIP A +CP+AP+KK V  S K+K PPKDGYF PPDLE++F
Sbjct: 3  MKLDMEEGCRTPKHSGCRIPPATICPSAPKKKPVVYSTKKKVPPKDGYFNPPDLELIF 60

[Close]
BLAST of Cp4.1LG01g04930 vs. TrEMBL
Match: I1JI02_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G248800 PE=4 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 2.5e-10
Identity = 34/68 (50.00%), Postives = 49/68 (72.06%), Query Frame = 1 

Query: 1  MAEEKKDICRTPRRKSCRIPVAMLCPAAPRKKSV--SLKRKAPPKDGYFRPPDLEVLFGF 60
          M ++ ++ CRTP+R +CRIP AM+CP AP+KK      +++ PPK GYF PPDLE++F  
Sbjct: 3  MVKDIEEGCRTPKRSACRIPAAMVCPPAPKKKPAIYPARKRVPPKKGYFVPPDLELIFR- 62

Query: 61 VAPTGDVY 67
          VAPT + +
Sbjct: 63 VAPTREAF 69

[Close]
BLAST of Cp4.1LG01g04930 vs. TrEMBL
Match: A0A067LKR5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01434 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.3e-10
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 1 

Query: 3  EEKKDICRTPRRKSCRIPVAMLCPAAPRKKSVSLKRKAPPKDGYFRPPDLEVLFGFVAP 62
          E   ++C TPRR+  RIP  + CP AP+KKSV  K   PP DGYF+PPDLE +F  +AP
Sbjct: 2  EVDHEVCMTPRRRESRIPATLACPPAPKKKSVRFKETTPPNDGYFQPPDLESIF-VIAP 59

[Close]
BLAST of Cp4.1LG01g04930 vs. TAIR10
Match: AT5G02220.1 (AT5G02220.1 unknown protein)

HSP 1 Score: 63.9 bits (154), Expect = 4.5e-11
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 1 

Query: 1  MAEEKKDICRTPRRKSCRIPVAMLCPAAPRKKSVSLKRKAPPKDGYFRPPDLEVLF 57
          MAEE    C TPR    RIPVA +CP  PRKK + ++++ PP++GYF+PPDLE LF
Sbjct: 10 MAEEG---CTTPRSTMYRIPVASVCPPPPRKKLMVVRKRDPPRNGYFQPPDLETLF 62

[Close]
BLAST of Cp4.1LG01g04930 vs. TAIR10
Match: AT1G60783.1 (AT1G60783.1 unknown protein)

HSP 1 Score: 47.0 bits (110), Expect = 5.7e-06
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 1 

Query: 4   EKKDIC-RTPRRKSCRIPVAMLCPAAPRKKSVSLKRKAPPKDGYFRPPDLEVLF 57
           E +D+C  TP   S RIP  + CP AP+K+ ++LK    P++ +F PPDLE +F
Sbjct: 49  EDEDLCPTTPTADSVRIPTVIPCPPAPKKRKLTLKVSYGPRE-FFSPPDLETVF 101

[Close]
BLAST of Cp4.1LG01g04930 vs. NCBI nr
Match: gi|700195384|gb|KGN50561.1| (hypothetical protein Csa_5G182660 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 2.2e-20
Identity = 49/61 (80.33%), Postives = 54/61 (88.52%), Query Frame = 1 

Query: 1  MAEEKKDICRTPRRKSCRIPVAMLCPAAPRKKSVSLKRKAPPKDGYFRPPDLEVLFGFVA 60
          MAEE  ++CRTPRR+SCRIPVAM CP+APRKK V LKRKAPPK+GYFR PDLEVLFGFV 
Sbjct: 1  MAEETVELCRTPRRRSCRIPVAMACPSAPRKKPVCLKRKAPPKEGYFRSPDLEVLFGFVT 60

Query: 61 P 62
          P
Sbjct: 61 P 61

[Close]
BLAST of Cp4.1LG01g04930 vs. NCBI nr
Match: gi|947065943|gb|KRH15086.1| (hypothetical protein GLYMA_14G067700 [Glycine max])

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-10
Identity = 34/68 (50.00%), Postives = 51/68 (75.00%), Query Frame = 1 

Query: 1  MAEEKKDICRTPRRKSCRIPVAMLCPAAPRKKSV--SLKRKAPPKDGYFRPPDLEVLFGF 60
          M ++ ++ CRTP+R +CRIP AM+CP  P+KKS   + +++ PPK+GYF PPDLE++F  
Sbjct: 1  MVKDIEEGCRTPKRSACRIPAAMVCPPPPKKKSAAYTARQRVPPKNGYFVPPDLELIFR- 60

Query: 61 VAPTGDVY 67
          VAPT + +
Sbjct: 61 VAPTREAF 67

[Close]
BLAST of Cp4.1LG01g04930 vs. NCBI nr
Match: gi|357492261|ref|XP_003616419.1| (hypothetical protein MTR_5g080040 [Medicago truncatula])

HSP 1 Score: 73.2 bits (178), Expect = 2.1e-10
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 1 

Query: 1  MAEEKKDICRTPRRKSCRIPVAMLCPAAPRKKSV--SLKRKAPPKDGYFRPPDLEVLF 57
          M  + ++ CRTP+   CRIP A +CP+AP+KK V  S K+K PPKDGYF PPDLE++F
Sbjct: 3  MKLDMEEGCRTPKHSGCRIPPATICPSAPKKKPVVYSTKKKVPPKDGYFNPPDLELIF 60

[Close]
BLAST of Cp4.1LG01g04930 vs. NCBI nr
Match: gi|947124844|gb|KRH73050.1| (hypothetical protein GLYMA_02G248800 [Glycine max])

HSP 1 Score: 72.4 bits (176), Expect = 3.6e-10
Identity = 34/68 (50.00%), Postives = 49/68 (72.06%), Query Frame = 1 

Query: 1  MAEEKKDICRTPRRKSCRIPVAMLCPAAPRKKSV--SLKRKAPPKDGYFRPPDLEVLFGF 60
          M ++ ++ CRTP+R +CRIP AM+CP AP+KK      +++ PPK GYF PPDLE++F  
Sbjct: 3  MVKDIEEGCRTPKRSACRIPAAMVCPPAPKKKPAIYPARKRVPPKKGYFVPPDLELIFR- 62

Query: 61 VAPTGDVY 67
          VAPT + +
Sbjct: 63 VAPTREAF 69

[Close]
BLAST of Cp4.1LG01g04930 vs. NCBI nr
Match: gi|720003103|ref|XP_010256881.1| (PREDICTED: uncharacterized protein LOC104597159 [Nelumbo nucifera])

HSP 1 Score: 71.2 bits (173), Expect = 8.0e-10
Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 1 

Query: 4  EKKDICRTPRRKSCRIPVAMLCPAAPRKKSVSLKRKAPPKDGYFRPPDLEVLFGFVAPTG 63
          E++  C+TP+   C+IP A +CP  PRKK V  K++ PPK+GYF+PPDLEVLF  +AP  
Sbjct: 13 EEEQGCQTPKHGECQIPTASVCPPPPRKKPVYGKKRDPPKNGYFQPPDLEVLFA-LAPRR 72

Query: 64 DVY 67
          + Y
Sbjct: 73 EAY 74

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g04930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g04930 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KS84_CUCSA1.6e-2080.33Uncharacterized protein OS=Cucumis sativus GN=Csa_5G182660 PE=4 SV=1[more]
I1M847_SOYBN1.1e-1050.00Uncharacterized protein OS=Glycine max GN=GLYMA_14G067700 PE=4 SV=1[more]
G7KBS4_MEDTR1.5e-1056.90Uncharacterized protein OS=Medicago truncatula GN=MTR_5g080040 PE=4 SV=1[more]
I1JI02_SOYBN2.5e-1050.00Uncharacterized protein OS=Glycine max GN=GLYMA_02G248800 PE=4 SV=2[more]
A0A067LKR5_JATCU7.3e-1054.24Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01434 PE=4 SV=1[more]
BLAST of Cp4.1LG01g04930 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G02220.14.5e-1155.36 unknown protein[more]
AT1G60783.15.7e-0644.44 unknown protein[more]
BLAST of Cp4.1LG01g04930 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195384|gb|KGN50561.1|2.2e-2080.33hypothetical protein Csa_5G182660 [Cucumis sativus][more]
gi|947065943|gb|KRH15086.1|1.6e-1050.00hypothetical protein GLYMA_14G067700 [Glycine max][more]
gi|357492261|ref|XP_003616419.1|2.1e-1056.90hypothetical protein MTR_5g080040 [Medicago truncatula][more]
gi|947124844|gb|KRH73050.1|3.6e-1050.00hypothetical protein GLYMA_02G248800 [Glycine max][more]
gi|720003103|ref|XP_010256881.1|8.0e-1052.38PREDICTED: uncharacterized protein LOC104597159 [Nelumbo nucifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009987 cellular process
cellular_component GO:0005575 cellular_component
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g04930.1Cp4.1LG01g04930.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33142FAMILY NOT NAMEDcoord: 1..56
score: 7.8
NoneNo IPR availablePANTHERPTHR33142:SF3SUBFAMILY NOT NAMEDcoord: 1..56
score: 7.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g04930Cucsa.165210Cucumber (Gy14) v1cgycpeB0457
Cp4.1LG01g04930CmaCh04G002070Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g04930CmoCh04G002070Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g04930Cla004001Watermelon (97103) v1cpewmB403
Cp4.1LG01g04930Csa5G182660Cucumber (Chinese Long) v2cpecuB438
Cp4.1LG01g04930MELO3C023871Melon (DHL92) v3.5.1cpemeB378
Cp4.1LG01g04930ClCG07G003460Watermelon (Charleston Gray)cpewcgB410
Cp4.1LG01g04930CSPI05G09760Wild cucumber (PI 183967)cpecpiB438
Cp4.1LG01g04930MELO3C023871.2Melon (DHL92) v3.6.1cpemedB438
Cp4.1LG01g04930CsaV3_5G008200Cucumber (Chinese Long) v3cpecucB0542
Cp4.1LG01g04930CsaV3_3G034820Cucumber (Chinese Long) v3cpecucB0485
Cp4.1LG01g04930Bhi06G000857Wax gourdcpewgoB0503
Cp4.1LG01g04930Bhi11G001880Wax gourdcpewgoB0487
Cp4.1LG01g04930CsGy5G007110Cucumber (Gy14) v2cgybcpeB647
Cp4.1LG01g04930CsGy3G030070Cucumber (Gy14) v2cgybcpeB364
Cp4.1LG01g04930Carg18328Silver-seed gourdcarcpeB0130
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g04930Wax gourdcpewgoB0543
Cp4.1LG01g04930Cucurbita pepo (Zucchini)cpecpeB072
Cp4.1LG01g04930Cucurbita pepo (Zucchini)cpecpeB374
Cp4.1LG01g04930Cucurbita pepo (Zucchini)cpecpeB401
Cp4.1LG01g04930Cucurbita maxima (Rimu)cmacpeB723
Cp4.1LG01g04930Cucurbita moschata (Rifu)cmocpeB582
Cp4.1LG01g04930Cucurbita moschata (Rifu)cmocpeB675
Cp4.1LG01g04930Bottle gourd (USVL1VR-Ls)cpelsiB318
Cp4.1LG01g04930Bottle gourd (USVL1VR-Ls)cpelsiB359
Cp4.1LG01g04930Cucumber (Gy14) v2cgybcpeB510
Cp4.1LG01g04930Cucumber (Gy14) v2cgybcpeB795
Cp4.1LG01g04930Melon (DHL92) v3.6.1cpemedB451
Cp4.1LG01g04930Melon (DHL92) v3.6.1cpemedB476
Cp4.1LG01g04930Melon (DHL92) v3.6.1cpemedB506
Cp4.1LG01g04930Silver-seed gourdcarcpeB0467
Cp4.1LG01g04930Silver-seed gourdcarcpeB0939
Cp4.1LG01g04930Cucumber (Chinese Long) v3cpecucB0508
Cp4.1LG01g04930Cucumber (Chinese Long) v3cpecucB0566