Cp4.1LG01g03980 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g03980
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	DNA polymerase lambda family protein
Location	Cp4.1LG01 : 1498723 .. 1502627 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATCAAGCGAAAGGGCCTTGCTGAATCTGATTAGCGGTCCACATGGGCCTCATTTTGGACACTTGTCAATTGATACGCCAATCACCATTGCAATCTTGGACACGTGTCTTATCAAATGGTCAATCATAGTACATAATACACAAGAAGACCACAGTCTCGTGCAGAGGAAGCTTTAATGGCGCCAAAGCGAAGCAAGAGCCAAAATCTCCTTCAGGATCCACATGGAATGTTCGCAGGGATGGTTGTCCTTTTAATCGAAAAGGGGGTGCAGGCTCGCCGGTTGCAGGTTTTACATTTTTATGATCTTTCTCTGCAACTTTGTGTTTCAAATGAATTTAAAGTCGTTATTTGGGTTTTGGTTTCGTGGTTGAAGATTTGGAAACAGAAGTTGGTCCAAATGGGTGCTTGTATTGAGGATCGTTTGTCGAAAAGGGTCAGCCATATATTTGCTGCGACCTCGGACGCTCTTCTGCAAAAACTGGACGGTGAGCGTTTGGCACGCTTTGAAGGGGTGAGTCCTGCGTTTCTTGCTAATTACACATGTATATTCGTATGTGGGTTCTGACAATGATGAACTTTGGGGCGATCGCTCGTGAATGGTTATTGAATTAGGCTAATTACTACACATTTTCAGAAGGTTCTCTCATACGAGTGGCTAGAAGACAGCTTACGTTCAGGGGAGAGGGCATCAGAGGATTTGTACACTGTAAAAGTGGGTTTAGATGGGGAAAATGGAAGAGATGAGCCGCAGCCGTCTATTTCCAAAAAACTAAAACTGTCTCCCAACAATTCGGAAGAAGGAAGTGTTGAAAGTGGAGGAGATTCAAATGCTCCAACCCTTGTAACAAAGACTGCTACAGATCAAACAGTGACTAACCCAAGAACTTCTGATTCTCTTAATAGCAATGTAAGTTTCTTTTCTAACAGTTCTGAAATGTGTTTGCTCACCAGTTCATGAATTAGGAATGTTTTTTTCTGTAAATATGTGGCTTGATCATGGAAGTCTTTAAAAGTAATTTCCAGTTCTTCTTAAACTGCTCATATCTGAATGAATCATTTTGTTCTAAGAAGGTGAAACTTGTGCAGACATCTATGTCATACAGTCCACCGGATCTGAATAAAAACATAACTGAGATTTTTGGAAAACTTATCAACATATACAGAGGTGAGAGTGACGTTTTTTCGGACTAATTGAGTGCTCGTGTTTCCACGCCTGGTTTCTAATGGCTTGTCTTCTTTGTATTTTAAGCATTGGGTGATGAACGAAGGTCATTTAGCTACTACAAGGCAATTCCAGTAATTGAGAAGCTACCCTTTAAAATTGAGAGCATTGATCAGGTCAAACACCTGCCAGCAATAGGAAAATCGTTGCAGGATCATGTGAGTGTAGTAGCATAACGACTGTAGTTCCGAATTTGAATTTTCAACTAACTTCTTTCTCTTTTGAGGTGGTGTGTTATGTTACCTGCAATCAATCTGCTTGTTCATAGTATCATTTCCCATTGAATTGTGTGTTAGGGCTGGCCTGTTTTGGCTAGGTTCTTTCTGGACTTGAGATTGCTTCCGACCTCTGCAGGACTTCATTGGAAATCCATCTCGGCATGGGGGAGGACAGGACATGTCCTTGATATCATAGTCCTAAATGCTTTGCAATTTGTATATGGATTGATTATAGAAAGATTGTGCATTGTCTTGCAGATTCAAGAGATATCGACGACAGGAAAGTTATCGAAGTTGGAGCACTTTGAAACAGATGAAAAGGTGGTTGCAGATCTCTTAAGAAAACCTTAGACGTTCCACGTAGATAAATATCATCGATCTGCATTTACATATTTATCTTTCGATGTAGTGATGATCGATTCGTTTACTATCTTTCTCCTTGTTTACTTATCATATTGTAGTTTTAACCATTGTAGGTCCACACAATCTCACTTTTTGGGGAAGTATGGGGTATTGGACCAGCCACGGCTCTGCGATTATACGACAAAGGATGTAGAACCCTTGATGACTTGCAGAAGGAGTCGTTAACCCATGCGCAGAAAATAGGGTTGAAATATTTTGATGATATTAAACAGAGAATTCCTCGCAACGAGGTCGGCTGCTTTACTCTTGCGGTTTTTGCAACGTTAGCTTATGTTTCGGGTAAATGTGTTCTTGGATTTCTGAAGTCCATCTGATTTGATAGGTTCAGGACATGGAGAGTCTTCTTAAGAAGGCTGGGGAAGATGTTTTGCCAGGGGTGAGAATTGAAACACCTCCTTACATACTCATACTCGATCTAATAAATTTGGTTGTTAATTGATATTCATGGTGCTTGTTCTTTCAGGTTCTTATTGTCTGTGGAGGATCATTTCGGCGAGGGAAGTCGTCGTGTGGAGATATGGACATTGTAATCACACATCCCGATGGGAAAAGGTTTCAAGCCCCTAGCCTTAATCACTTCTGTATTATTACTCTTGAATGTCGTTTGAGATCTTGATGTGAGATCCCACATCAGTTGGAGAGGAGAACGAAACATTCTTTATAAGGGTATGGAAACCTCTCTCTAGCATACGCGTTTTAAAAACCTTGAGGGGAACCCCAAAAGGGAATGCCCAAATATCTGCTAGCGGTGAGCTTGGGGTGTTACACGAAACACCTTCTTATTATTAATAGTTCCTTGAGAGTTATTTTGTCTGTAATTTTAGCCATAGAGGTTTTCTACAAAGATACGTTAAGCATTTAAAGGATATGAAGTTTCTAAGGGAGGATCTGATATTCAGCACGCACAGTGAGGAGGTCAAATTACCCATTTCTCTCTGTTTATCAGTTTATGGCTACAAGATGCAATGATATGCTTTTCTCAATCCCTTTATATATATGCATTGTGAAACGATAAACAGGGAACAGATTCTGGTGTCGACACATATTTTGGCCTCTGCACGTATCCGGGAAGAGAATTGCGACACCGAATAGATCTGAAGGCACGAGTCCTCTCGTTTCTAATCTGCTCTTTCTTTGGTCACTTCTCGTTTAGAATAGAATGGTAACTTTGAAATAGGTTGTTAGAAAAGTGGTGATAGAATAGAACCTAGTTCGTTTATGGTAGATTCGATTCGACCGATAACCATTATGGGTTGACCCAGACACTCACGGATATTAAAAACCTATGCATTCGACTCTTGCAGGTGTATCCAAGAGACATATATGCATTTGGATTGCTTGCATGGACGGGAAACGATGTACTAAACAGGAGGTATGCTGTTTCTGTGCGTTTTCAAATAGTTTTTCGAGTTGAAAAGTGCAATGCCGTTATGCATGTTAGACGAACACGACTCTCCACAATAGTATGATATTGTCCACTTTAAGCATAAGCTCTCATGGTTTTGTTTTGGGCTTCTCCAAAAGTCTTCATATCAATGGAGAGAGTGTTCTTTGTTTATAAACCCATGATCATTCCATTCCTAAATTAGCCGACGTGGGACTTTCATCATCCAACAATGCATACAGGCTGAGATTAGTAGCGGAATCAAAAGGATTTAGGATGGATGATACTGGGCTGTATCCAGCTACCCAAGGATCTGGTGGTAAAAGGGTAATTAACTAATTGCCTTAGTTCAAAGACATATGGCCTTAAAATATAGGGCTGTCCCTCACTTACTCCATTGATGGTGATTATGCTTACAGGGTGCAAAAGGTAGTGCAAGTTTGAAGTTCGATACAGAAAAGGACATTTTCGAGTTCCTCGGGTTTCCATGGCTGGAACCCCAGCAAAGGAATATATGACTACTCTCTTCTTTTAATGTACATTATAACAACTGTTTGTTCATATATATATATATATAATAAGAATCACTAGAGGAAGGGGTTGAACCTTCGACCTTGTGGTTAACAGCCACACGCTCTAACCAAGTGAGCTACTCCAG

mRNA sequence

TATCAAGCGAAAGGGCCTTGCTGAATCTGATTAGCGGTCCACATGGGCCTCATTTTGGACACTTGTCAATTGATACGCCAATCACCATTGCAATCTTGGACACGTGTCTTATCAAATGGTCAATCATAGTACATAATACACAAGAAGACCACAGTCTCGTGCAGAGGAAGCTTTAATGGCGCCAAAGCGAAGCAAGAGCCAAAATCTCCTTCAGGATCCACATGGAATGTTCGCAGGGATGGTTGTCCTTTTAATCGAAAAGGGGGTGCAGGCTCGCCGGTTGCAGATTTGGAAACAGAAGTTGGTCCAAATGGGTGCTTGTATTGAGGATCGTTTGTCGAAAAGGGTCAGCCATATATTTGCTGCGACCTCGGACGCTCTTCTGCAAAAACTGGACGGTGAGCGTTTGGCACGCTTTGAAGGGAAGGTTCTCTCATACGAGTGGCTAGAAGACAGCTTACGTTCAGGGGAGAGGGCATCAGAGGATTTGTACACTGTAAAAGTGGGTTTAGATGGGGAAAATGGAAGAGATGAGCCGCAGCCGTCTATTTCCAAAAAACTAAAACTGTCTCCCAACAATTCGGAAGAAGGAAGTGTTGAAAGTGGAGGAGATTCAAATGCTCCAACCCTTGTAACAAAGACTGCTACAGATCAAACAGTGACTAACCCAAGAACTTCTGATTCTCTTAATAGCAATGTGAAACTTGTGCAGACATCTATGTCATACAGTCCACCGGATCTGAATAAAAACATAACTGAGATTTTTGGAAAACTTATCAACATATACAGAGCATTGGGTGATGAACGAAGGTCATTTAGCTACTACAAGGCAATTCCAGTAATTGAGAAGCTACCCTTTAAAATTGAGAGCATTGATCAGGTCAAACACCTGCCAGCAATAGGAAAATCGTTGCAGGATCATGGCTGGCCTGTTTTGGCTAGGTTCTTTCTGGACTTGAGATTGCTTCCGACCTCTGCAGGACTTCATTGGAAATCCATCTCGGCATGGGGGAGGACAGGACATGTCCTTGATATCATAGTCCTAAATGCTTTGCAATTTGTATATGGATTGATTATAGAAAGATTGTGCATTGTCTTGCAGATTCAAGAGATATCGACGACAGGAAAGTTATCGAAGTTGGAGCACTTTGAAACAGATGAAAAGGTCCACACAATCTCACTTTTTGGGGAAGTATGGGGTATTGGACCAGCCACGGCTCTGCGATTATACGACAAAGGATGTAGAACCCTTGATGACTTGCAGAAGGAGTCGTTAACCCATGCGCAGAAAATAGGGTTGAAATATTTTGATGATATTAAACAGAGAATTCCTCGCAACGAGGTTCAGGACATGGAGAGTCTTCTTAAGAAGGCTGGGGAAGATGTTTTGCCAGGGGTTCTTATTGTCTGTGGAGGATCATTTCGGCGAGGGAAGTCGTCGTGTGGAGATATGGACATTGTAATCACACATCCCGATGGGAAAAGATTCGATTCGACCGATAACCATTATGGGTTGACCCAGACACTCACGGATATTAAAAACCTATGCATTCGACTCTTGCAGGTGTATCCAAGAGACATATATGCATTTGGATTGCTTGCATGGACGGGAAACGATGTACTAAACAGGAGGTATGCTGTTTCTGGTGCAAAAGGTAGTGCAAGTTTGAAGTTCGATACAGAAAAGGACATTTTCGAGTTCCTCGGGTTTCCATGGCTGGAACCCCAGCAAAGGAATATATGACTACTCTCTTCTTTTAATGTACATTATAACAACTGTTTGTTCATATATATATATATATAATAAGAATCACTAGAGGAAGGGGTTGAACCTTCGACCTTGTGGTTAACAGCCACACGCTCTAACCAAGTGAGCTACTCCAG

Coding sequence (CDS)

ATGGCGCCAAAGCGAAGCAAGAGCCAAAATCTCCTTCAGGATCCACATGGAATGTTCGCAGGGATGGTTGTCCTTTTAATCGAAAAGGGGGTGCAGGCTCGCCGGTTGCAGATTTGGAAACAGAAGTTGGTCCAAATGGGTGCTTGTATTGAGGATCGTTTGTCGAAAAGGGTCAGCCATATATTTGCTGCGACCTCGGACGCTCTTCTGCAAAAACTGGACGGTGAGCGTTTGGCACGCTTTGAAGGGAAGGTTCTCTCATACGAGTGGCTAGAAGACAGCTTACGTTCAGGGGAGAGGGCATCAGAGGATTTGTACACTGTAAAAGTGGGTTTAGATGGGGAAAATGGAAGAGATGAGCCGCAGCCGTCTATTTCCAAAAAACTAAAACTGTCTCCCAACAATTCGGAAGAAGGAAGTGTTGAAAGTGGAGGAGATTCAAATGCTCCAACCCTTGTAACAAAGACTGCTACAGATCAAACAGTGACTAACCCAAGAACTTCTGATTCTCTTAATAGCAATGTGAAACTTGTGCAGACATCTATGTCATACAGTCCACCGGATCTGAATAAAAACATAACTGAGATTTTTGGAAAACTTATCAACATATACAGAGCATTGGGTGATGAACGAAGGTCATTTAGCTACTACAAGGCAATTCCAGTAATTGAGAAGCTACCCTTTAAAATTGAGAGCATTGATCAGGTCAAACACCTGCCAGCAATAGGAAAATCGTTGCAGGATCATGGCTGGCCTGTTTTGGCTAGGTTCTTTCTGGACTTGAGATTGCTTCCGACCTCTGCAGGACTTCATTGGAAATCCATCTCGGCATGGGGGAGGACAGGACATGTCCTTGATATCATAGTCCTAAATGCTTTGCAATTTGTATATGGATTGATTATAGAAAGATTGTGCATTGTCTTGCAGATTCAAGAGATATCGACGACAGGAAAGTTATCGAAGTTGGAGCACTTTGAAACAGATGAAAAGGTCCACACAATCTCACTTTTTGGGGAAGTATGGGGTATTGGACCAGCCACGGCTCTGCGATTATACGACAAAGGATGTAGAACCCTTGATGACTTGCAGAAGGAGTCGTTAACCCATGCGCAGAAAATAGGGTTGAAATATTTTGATGATATTAAACAGAGAATTCCTCGCAACGAGGTTCAGGACATGGAGAGTCTTCTTAAGAAGGCTGGGGAAGATGTTTTGCCAGGGGTTCTTATTGTCTGTGGAGGATCATTTCGGCGAGGGAAGTCGTCGTGTGGAGATATGGACATTGTAATCACACATCCCGATGGGAAAAGATTCGATTCGACCGATAACCATTATGGGTTGACCCAGACACTCACGGATATTAAAAACCTATGCATTCGACTCTTGCAGGTGTATCCAAGAGACATATATGCATTTGGATTGCTTGCATGGACGGGAAACGATGTACTAAACAGGAGGTATGCTGTTTCTGGTGCAAAAGGTAGTGCAAGTTTGAAGTTCGATACAGAAAAGGACATTTTCGAGTTCCTCGGGTTTCCATGGCTGGAACCCCAGCAAAGGAATATATGA

Protein sequence

MAPKRSKSQNLLQDPHGMFAGMVVLLIEKGVQARRLQIWKQKLVQMGACIEDRLSKRVSHIFAATSDALLQKLDGERLARFEGKVLSYEWLEDSLRSGERASEDLYTVKVGLDGENGRDEPQPSISKKLKLSPNNSEEGSVESGGDSNAPTLVTKTATDQTVTNPRTSDSLNSNVKLVQTSMSYSPPDLNKNITEIFGKLINIYRALGDERRSFSYYKAIPVIEKLPFKIESIDQVKHLPAIGKSLQDHGWPVLARFFLDLRLLPTSAGLHWKSISAWGRTGHVLDIIVLNALQFVYGLIIERLCIVLQIQEISTTGKLSKLEHFETDEKVHTISLFGEVWGIGPATALRLYDKGCRTLDDLQKESLTHAQKIGLKYFDDIKQRIPRNEVQDMESLLKKAGEDVLPGVLIVCGGSFRRGKSSCGDMDIVITHPDGKRFDSTDNHYGLTQTLTDIKNLCIRLLQVYPRDIYAFGLLAWTGNDVLNRRYAVSGAKGSASLKFDTEKDIFEFLGFPWLEPQQRNI

Homology

[Close]

BLAST of Cp4.1LG01g03980 vs. Swiss-Prot
Match: DPOLB_DANRE (DNA polymerase beta OS=Danio rerio GN=polb PE=2 SV=2)

HSP 1 Score: 142.9 bits (359), Expect = 9.9e-33
Identity = 95/269 (35.32%), Postives = 139/269 (51.67%), Query Frame = 1


Query: 306 IVLQIQEISTTGKLSKLEHFETDEKVHTISLFGEVWGIGPATALRLYDKGCRTLDDLQK- 365
           I  +I E  TTGKL KLE    D+   +I+    V GIGPA A + +D+G R L+DL+K 
Sbjct: 68  IAEKIDEFLTTGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFFDEGVRNLEDLKKI 127

Query: 366 -ESLTHAQKIGLKYFDDIKQRIPRNEVQDMESLLKKAGEDVLPGVLIVCGGSFRRGKSSC 425
              L H Q+IGLKYF++ ++RIPR+E+Q ME+L+ K  + V P  +    GS+RRG  S 
Sbjct: 128 EHKLNHHQQIGLKYFEEFEKRIPRSEMQKMEALILKELDIVDPEYIGTICGSYRRGAESS 187

Query: 426 GDMDIVITHPD--------GKRFDSTDNHYG----LTQTLT--DIKNLCIRLLQ------ 485
           GD+DI++THPD         K   +  +H      +T TL+  D K + +  LQ      
Sbjct: 188 GDIDILLTHPDFTSQSEKQPKLLHAVVDHLESIGFITDTLSKGDTKFMGVCQLQKEKEEE 247

Query: 486 ------------VYPRDIYAFGLLAWTGNDVLN-------------------RRYAVSGA 522
                       + P+D Y  G+L +TG+D+ N                   R   V+G 
Sbjct: 248 EEESLHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTIRPLGVTGV 307

[Close]

BLAST of Cp4.1LG01g03980 vs. Swiss-Prot
Match: DPOLB_XENLA (DNA polymerase beta OS=Xenopus laevis GN=polb PE=1 SV=3)

HSP 1 Score: 137.9 bits (346), Expect = 3.2e-31
Identity = 87/266 (32.71%), Postives = 130/266 (48.87%), Query Frame = 1


Query: 306 IVLQIQEISTTGKLSKLEHFETDEKVHTISLFGEVWGIGPATALRLYDKGCRTLDDLQ-- 365
           I  +I E   TGKL KLE    D+   +I+    V GIGPA A + +D+G +TLDDL+  
Sbjct: 69  IAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPAAARKFFDEGIKTLDDLRNN 128

Query: 366 KESLTHAQKIGLKYFDDIKQRIPRNEVQDMESLLKKAGEDVLPGVLIVCGGSFRRGKSSC 425
           +  L H QKIGLK+FDD ++RIPR E+  M+ ++     ++ P  +    GSFRRG  S 
Sbjct: 129 EHKLNHHQKIGLKHFDDFEKRIPRKEMLQMQEIILDKVNNLDPEYIATVCGSFRRGAESS 188

Query: 426 GDMDIVITHPDGKRFDSTDNH--YGLTQTLTDIKNLCIRL-------------------- 485
           GDMDI++THPD     +      + + Q L D   +   L                    
Sbjct: 189 GDMDILLTHPDFTSESAKQPRLLHQVVQCLEDCNFITDTLVKGDTKFMGVCQLPCESDQD 248

Query: 486 -------LQVYPRDIYAFGLLAWTGNDVLN-------------------RRYAVSGAKGS 522
                  +++ P+D Y  G+L +TG+D+ N                   R   V+G  G 
Sbjct: 249 YPYRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTLRPLGVTGIAGE 308

[Close]

BLAST of Cp4.1LG01g03980 vs. Swiss-Prot
Match: DPOLB_RAT (DNA polymerase beta OS=Rattus norvegicus GN=Polb PE=1 SV=4)

HSP 1 Score: 132.1 bits (331), Expect = 1.8e-29
Identity = 87/270 (32.22%), Postives = 133/270 (49.26%), Query Frame = 1


Query: 306 IVLQIQEISTTGKLSKLEHFETDEKVHTISLFGEVWGIGPATALRLYDKGCRTLDDLQK- 365
           I  +I E   TGKL KLE    D+   +I+    V GIGP+ A +L D+G +TL+DL+K 
Sbjct: 69  IAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKN 128

Query: 366 -ESLTHAQKIGLKYFDDIKQRIPRNEVQDMESLLKKAGEDVLPGVLIVCGGSFRRGKSSC 425
            + L H Q+IGLKYF+D ++RIPR E+  M+ ++    + + P  +    GSFRRG  S 
Sbjct: 129 EDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESS 188

Query: 426 GDMDIVITHPD------------GKRFDSTDNHYGLTQTL----TDIKNLC--------- 485
           GDMD+++THP+             +  +       +T TL    T    +C         
Sbjct: 189 GDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQLPSENDEN 248

Query: 486 --------IRLLQVYPRDIYAFGLLAWTGNDVLN-------------------RRYAVSG 522
                   IRL+   P+D Y  G+L +TG+D+ N                   R   V+G
Sbjct: 249 EYPHRRIDIRLI---PKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTG 308

[Close]

BLAST of Cp4.1LG01g03980 vs. Swiss-Prot
Match: DPOLL_MACFA (DNA polymerase lambda OS=Macaca fascicularis GN=POLL PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 3.0e-29
Identity = 89/266 (33.46%), Postives = 131/266 (49.25%), Query Frame = 1


Query: 309 QIQEISTTGKLSKLEHFETDEKVHTISLFGEVWGIGPATALRLYDKGCRTLDDLQKE-SL 368
           +I EI  +G L KL+H    E V  + LF  +WG G  TA   Y +G R+L+D++ + SL
Sbjct: 312 KIIEILESGHLRKLDHIS--ESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASL 371

Query: 369 THAQKIGLKYFDDIKQRIPRNEVQDMESLLKKAGEDVLPGVLIVCGGSFRRGKSSCGDMD 428
           T  Q IGLK+++D  +R+PR E  ++E  ++KA +    G+L V  GS+RRGK++CGD+D
Sbjct: 372 TTQQAIGLKHYNDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVD 431

Query: 429 IVITHPDGKR--------FDSTDNHYGLTQTLTDIKN---------LCIRL--------- 488
           ++ITHPDG+          DS      LT  L   +          +C RL         
Sbjct: 432 VLITHPDGRSHRGIFSRLLDSLRQQGFLTDDLVSQEENGQQQKYLGVC-RLPGPGWRHRR 491

Query: 489 --LQVYPRDIYAFGLLAWTGNDVLNRRY-AVSGAKGSAS--------------------- 522
             + V P   +A  LL +TG+   NR   A++  KG +                      
Sbjct: 492 LDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKMGPG 551

[Close]

BLAST of Cp4.1LG01g03980 vs. Swiss-Prot
Match: DPOLL_HUMAN (DNA polymerase lambda OS=Homo sapiens GN=POLL PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.9e-29
Identity = 89/266 (33.46%), Postives = 130/266 (48.87%), Query Frame = 1


Query: 309 QIQEISTTGKLSKLEHFETDEKVHTISLFGEVWGIGPATALRLYDKGCRTLDDLQKE-SL 368
           +I EI  +G L KL+H    E V  + LF  +WG G  TA   Y +G R+L+D++ + SL
Sbjct: 312 KIIEILESGHLRKLDHIS--ESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASL 371

Query: 369 THAQKIGLKYFDDIKQRIPRNEVQDMESLLKKAGEDVLPGVLIVCGGSFRRGKSSCGDMD 428
           T  Q IGLK++ D  +R+PR E  ++E  ++KA +    G+L V  GS+RRGK++CGD+D
Sbjct: 372 TTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVD 431

Query: 429 IVITHPDGKR--------FDSTDNHYGLTQTLTDIKN---------LCIRL--------- 488
           ++ITHPDG+          DS      LT  L   +          +C RL         
Sbjct: 432 VLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVC-RLPGPGRRHRR 491

Query: 489 --LQVYPRDIYAFGLLAWTGNDVLNRRY-AVSGAKGSAS--------------------- 522
             + V P   +A  LL +TG+   NR   A++  KG +                      
Sbjct: 492 LDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPG 551

[Close]

BLAST of Cp4.1LG01g03980 vs. TrEMBL
Match: A0A0A0KQD3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603350 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 5.4e-102
Identity = 201/258 (77.91%), Postives = 223/258 (86.43%), Query Frame = 1


Query: 1   MAPKRSKSQNLLQDPHGMFAGMVVLLIEKGVQARRLQIWKQKLVQMGACIEDRLSKRVSH 60
           MAPKR KSQ+L +DPHGMFAGMVV L+EKGVQ RRLQIWKQKLVQMGA IE+RLSK VSH
Sbjct: 1   MAPKRRKSQSLSEDPHGMFAGMVVFLVEKGVQTRRLQIWKQKLVQMGASIEERLSKMVSH 60

Query: 61  IFAATSDALLQKLDGERLARFEGKVLSYEWLEDSLRSGERASEDLYTVKVGLDGENGRDE 120
           IFA++ DALL+K+DG RLARF+GKVLSY+WLEDSL SGE+ASEDLYTVKVGLD E+GRD+
Sbjct: 61  IFASSLDALLEKVDGARLARFKGKVLSYQWLEDSLSSGEKASEDLYTVKVGLD-EDGRDK 120

Query: 121 PQPSISKKLKLSPNNSEEGSVESGGDSNAPTLVTKTAT---------DQTVTNPRTSDSL 180
           PQ S  KKL LSPNNSE  S ESGGDS+A TLVTKTAT          QTVT+PRTSD +
Sbjct: 121 PQQSTPKKLNLSPNNSEAVSFESGGDSDASTLVTKTATGLEDSKLSIGQTVTSPRTSDFV 180

Query: 181 NSNVKLVQTSMSYSPPDLNKNITEIFGKLINIYRALGDERRSFSYYKAIPVIEKLPFKIE 240
            +N+     ++SYSPPD+NKNITEIFGKLINIYRALGDERRSFSYYKAIPVIEKLPF+IE
Sbjct: 181 GNNI-----ALSYSPPDMNKNITEIFGKLINIYRALGDERRSFSYYKAIPVIEKLPFRIE 240

Query: 241 SIDQVKHLPAIGKSLQDH 250
           SIDQVKHLPAIGKSLQDH
Sbjct: 241 SIDQVKHLPAIGKSLQDH 252

[Close]

BLAST of Cp4.1LG01g03980 vs. TrEMBL
Match: A0A0J8BWQ9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g181170 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 8.6e-84
Identity = 203/443 (45.82%), Postives = 267/443 (60.27%), Query Frame = 1


Query: 1   MAPKRSKSQNLLQDPHGMFAGMVVLLIEKGVQARRLQIWKQKLVQMGACIEDRLSKRVSH 60
           MAPK+ K  +L      MF+GM V L++ GVQ RRLQIWKQKL QMGA IE  LSK+V+H
Sbjct: 1   MAPKK-KETSLPSPSDSMFSGMFVFLVDTGVQPRRLQIWKQKLEQMGAKIEGYLSKKVTH 60

Query: 61  IFAATSDALLQKLDGERLARFEGKVLSYEWLEDSLRSGERASEDLYTVKVGLDGENGRDE 120
           IFA   +AL QK+D +RL+ F+G +L+Y+WLEDSLR GE+ SED Y +K         +E
Sbjct: 61  IFAMNLNALKQKIDSKRLSTFKGNILAYQWLEDSLRLGEKVSEDSYRLK---------EE 120

Query: 121 PQPSISKKLKLSPNNSEEGSVESGGDSNAPTLVTKTATDQTVTNPRTSDSLNSNVKLVQT 180
           P            N S + S E+ G +N       + +++   + +   S   N+K    
Sbjct: 121 P----------GENVSHQSSAEASGHANE----NSSGSEEVSPHKKLRSSPPLNLKDSTK 180

Query: 181 SMSYSPPDLNKNITEIFGKLI--NIYRALGD-ERRSFSYYKAIPVIEKLPFKIESIDQVK 240
           ++     D +    E+ G++     Y  L D      + +    + +K        D  +
Sbjct: 181 ALPEDSRDSSAESKELHGEIFRSRSYDGLSDTSDAQTANFNVAGISDKEVSTYNPPDLNR 240

Query: 241 HLPAIGKSLQDHGWPVLA---RFFLDLRLLPTSAGLHWKSISAWGRTGHVLDIIVLNALQ 300
           ++  + K L D+ +  L    R F   + +P    L +K  SA  +  H+  I       
Sbjct: 241 NITDVFKKLIDN-YRALGDDRRSFSYYKAIPVIEKLPFKIESA-DQVKHLPGI------- 300

Query: 301 FVYGLIIERLCIVLQIQEISTTGKLSKLEHFETDEKVHTISLFGEVWGIGPATALRLYDK 360
              G  +        IQEI +TGKLSKLEHFE DEKV TISLFGEVWGIGPATAL+LY+K
Sbjct: 301 ---GKSLRD-----HIQEIVSTGKLSKLEHFENDEKVKTISLFGEVWGIGPATALKLYEK 360

Query: 361 GCRTLDDLQKE-SLTHAQKIGLKYFDDIKQRIPRNEVQDMESLLKKAGEDVLPGVLIVCG 420
           G RTL+DL+K+ SLT AQKIGL+YFDDIK+RIPR+EV +ME LL+KAGE+VLPGVLIVCG
Sbjct: 361 GHRTLEDLEKDPSLTKAQKIGLQYFDDIKKRIPRHEVAEMEKLLQKAGEEVLPGVLIVCG 402

Query: 421 GSFRRGKSSCGDMDIVITHPDGK 437
           GS+RRGKSSCGDMDIVITHPDG+
Sbjct: 421 GSYRRGKSSCGDMDIVITHPDGQ 402

[Close]

BLAST of Cp4.1LG01g03980 vs. TrEMBL
Match: A0A059D505_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02561 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 3.9e-76
Identity = 154/269 (57.25%), Postives = 186/269 (69.14%), Query Frame = 1


Query: 310 IQEISTTGKLSKLEHFETDEKVHTISLFGEVWGIGPATALRLYDKGCRTLDDLQKE-SLT 369
           IQEI TTGKLSKLEHFETDEKV TISLFGEVWGIGP TAL+ Y+KG RTLDDL++E SLT
Sbjct: 266 IQEIVTTGKLSKLEHFETDEKVRTISLFGEVWGIGPTTALKFYEKGYRTLDDLKREESLT 325

Query: 370 HAQKIGLKYFDDIKQRIPRNEVQDMESLLKKAGEDVLPGVLIVCGGSFRRGKSSCGDMDI 429
           HAQ++GLKYFDDIKQRIPR+EVQ+M+ LL+KAGEDVLPGV++VCGGS+RRGK+SCGD+D+
Sbjct: 326 HAQRLGLKYFDDIKQRIPRDEVQEMDQLLQKAGEDVLPGVVVVCGGSYRRGKASCGDLDV 385

Query: 430 VITHPDGK-------------------RFD---STDNHYGLTQTLTDIKNLCI------- 489
           VITHPDGK                   R D   ST +  G    +     LC        
Sbjct: 386 VITHPDGKSHRGFLKKYVKHLKDMGFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELR 445

Query: 490 -RL-LQVYPRDIYAFGLLAWTGNDVLNRRYAV------------------------SGAK 523
            R+ L+VYP+DIYAFGL+AWTGNDVLNRR  +                         G++
Sbjct: 446 HRIDLKVYPQDIYAFGLVAWTGNDVLNRRLRLLAESKGFRLDDTGLFPATHGSGGKRGSR 505

[Close]

BLAST of Cp4.1LG01g03980 vs. TrEMBL
Match: A0A067JBU8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21772 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.5e-75
Identity = 153/267 (57.30%), Postives = 186/267 (69.66%), Query Frame = 1


Query: 310 IQEISTTGKLSKLEHFETDEKVHTISLFGEVWGIGPATALRLYDKGCRTLDDLQKE-SLT 369
           IQEI TTGKLSKLEHFETDEKV TI+LFGEVWG+GPATAL+LY+KG R LDDL+ + SLT
Sbjct: 270 IQEIVTTGKLSKLEHFETDEKVRTITLFGEVWGVGPATALKLYEKGHRILDDLKNDDSLT 329

Query: 370 HAQKIGLKYFDDIKQRIPRNEVQDMESLLKKAGEDVLPGVLIVCGGSFRRGKSSCGDMDI 429
           H+QK+G+KYFDDIK RIPRNEV++ME LL+K+GE++LPGV+I+CGGSFRRGK+SCGD+D+
Sbjct: 330 HSQKLGVKYFDDIKTRIPRNEVREMEQLLQKSGEEILPGVVIICGGSFRRGKASCGDLDV 389

Query: 430 VITHPDG---KRF-------------------DSTDNHYGLTQTLTDIKNLCI------- 489
           VITHPDG   K F                    S  +  G    +     LC        
Sbjct: 390 VITHPDGISHKGFLPRYVKKLKDMKFLREDLVFSVHSEQGTDSGVDTYFGLCTYPGREMR 449

Query: 490 -RL-LQVYPRDIYAFGLLAWTGNDVLNRRY------------------AVS----GAKGS 523
            R+  +VYPRDIYAFGL+AWTGNDVLNRR                   A+S    GAK +
Sbjct: 450 HRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAISGGKRGAKAT 509

[Close]

BLAST of Cp4.1LG01g03980 vs. TrEMBL
Match: A0A061E5Q9_THECC (DNA polymerase lambda (POLL) isoform 4 OS=Theobroma cacao GN=TCM_010205 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.6e-75
Identity = 152/269 (56.51%), Postives = 182/269 (67.66%), Query Frame = 1


Query: 310 IQEISTTGKLSKLEHFETDEKVHTISLFGEVWGIGPATALRLYDKGCRTLDDLQKE-SLT 369
           IQEI TTGKLSKLEHFETDEKV TISLFGEVWGIGPATAL+LY+KG RTLDDL+ E SLT
Sbjct: 263 IQEIVTTGKLSKLEHFETDEKVRTISLFGEVWGIGPATALKLYEKGHRTLDDLKNEDSLT 322

Query: 370 HAQKIGLKYFDDIKQRIPRNEVQDMESLLKKAGEDVLPGVLIVCGGSFRRGKSSCGDMDI 429
           +AQK+GL YFDDIK RIPR+E Q+MESLL+K  +D++PGV++VCGGS+RRGK+SCGD+DI
Sbjct: 323 NAQKLGLNYFDDIKTRIPRHEAQEMESLLQKVADDIVPGVVVVCGGSYRRGKASCGDLDI 382

Query: 430 VITHPDGKRFD----------------------STDNHYGLTQTLTDIKNLCI------- 489
           VITHPDGK                         ST +  G    +     LC        
Sbjct: 383 VITHPDGKSHKGFLQKYVKRLKEMKFVREDLVFSTHSEEGTYSGVDTYFGLCTYPGRELR 442

Query: 490 -RL-LQVYPRDIYAFGLLAWTGNDVLNRRYAV------------------------SGAK 523
            R+ L+VYPRDIYAFGL+AWTGNDVLNRR  +                         GA+
Sbjct: 443 HRIDLKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGFRLDDTGLFPATHGSGGKRGAR 502

[Close]

BLAST of Cp4.1LG01g03980 vs. TAIR10
Match: AT1G10520.1 (AT1G10520.1 DNA polymerase lambda (POLL))

HSP 1 Score: 287.0 bits (733), Expect = 2.4e-77
Identity = 150/269 (55.76%), Postives = 179/269 (66.54%), Query Frame = 1


Query: 310 IQEISTTGKLSKLEHFETDEKVHTISLFGEVWGIGPATALRLYDKGCRTLDDLQKE-SLT 369
           IQEI TTGKLSKLEHFETDEKV TISLFGEVWG+GPATAL+LY+KG RTL+DL+ E SLT
Sbjct: 261 IQEIVTTGKLSKLEHFETDEKVRTISLFGEVWGVGPATALKLYEKGHRTLEDLKNEDSLT 320

Query: 370 HAQKIGLKYFDDIKQRIPRNEVQDMESLLKKAGEDVLPGVLIVCGGSFRRGKSSCGDMDI 429
           HAQK+GLKYFDDIK RIPR EVQ+ME LL++ GE+ LPGV IVCGGS+RRGK++CGD+DI
Sbjct: 321 HAQKLGLKYFDDIKTRIPRQEVQEMEQLLQRVGEETLPGVNIVCGGSYRRGKATCGDLDI 380

Query: 430 VITHPDGKRFD----------------------STDNHYGLTQTLTDIKNLCI------- 489
           V+THPDG+                         ST +  G    +     LC        
Sbjct: 381 VVTHPDGQSHKGFLTKFVKRLKEMNFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGQELR 440

Query: 490 -RL-LQVYPRDIYAFGLLAWTGNDVLNRRYAV------------------------SGAK 523
            R+  +VYPRDIY+FGL+AWTGNDVLNRR  +                         GA+
Sbjct: 441 RRIDFKVYPRDIYSFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATHSSSGNRGAR 500

[Close]

BLAST of Cp4.1LG01g03980 vs. NCBI nr
Match: gi|743822207|ref|XP_011021634.1| (PREDICTED: DNA polymerase lambda isoform X1 [Populus euphratica])

HSP 1 Score: 446.4 bits (1147), Expect = 6.7e-122
Identity = 276/598 (46.15%), Postives = 356/598 (59.53%), Query Frame = 1


Query: 1   MAPKRSKSQNLLQDPHGMFAGMVVLLIEKGVQARRLQIWKQKLVQMGACIEDRLSKRVSH 60
           MAPKR +S ++  DP G+F+GMVV L+E GVQ+RRLQIWKQKLVQMGA  E+RLSK+V+H
Sbjct: 1   MAPKRKRSPSI--DPQGIFSGMVVFLVETGVQSRRLQIWKQKLVQMGATTEERLSKKVTH 60

Query: 61  IFAATSDALLQKLDGERLA-RFEGKVLSYEWLEDSLRSGERASEDLYTVKVGLDGENGRD 120
           +FA  S ALLQ+L G  L  RF+ +VL Y+WLEDSLRSGE+ SED Y + V ++GEN +D
Sbjct: 61  VFAINSQALLQQLHGHHLLKRFKPRVLLYQWLEDSLRSGEKVSEDQYHLLVDMEGENTKD 120

Query: 121 EP------QPSISKKLKLSPNNSE--------EGSVESGGDS---NAPTLVTKTATDQTV 180
                     + S   +LS +N +        +   E+ G S   N+P     +   QT+
Sbjct: 121 RSLFLKLVNENTSSADELSHHNEKIKSDAKKFKSDAENKGLSEVPNSPGSSDSSPLSQTL 180

Query: 181 TNPRTSDSLNSNVKLVQTSMSYSPPDLNKNITEIFGKLINIYRALGDERRSFSYYKAIPV 240
           TNP  S +L+S++     S+ YSPPDLN+NITEIFGKLINIYRALGD+RRSFSYYKAIPV
Sbjct: 181 TNPIPSSTLHSDL-----SLPYSPPDLNRNITEIFGKLINIYRALGDDRRSFSYYKAIPV 240

Query: 241 IEKLPFKIESIDQVKHLPAIGKSLQDHGWPVLARFFLDLRLLPTSAGLHWKSISAWGRTG 300
           +EKLPFKIES DQVK LP IGKS+QDH            +++  S  +  + I   G+  
Sbjct: 241 VEKLPFKIESADQVKDLPGIGKSMQDH------------KIMGASGCMQIQEIVTTGK-- 300

Query: 301 HVLDIIVLNALQFVYGLIIERLCIVLQIQEISTTGKLSKLEHFETDEKVHTISLFGEVWG 360
                  L+ L+  +    E++  +    E+   G  + L+ +   EK H          
Sbjct: 301 -------LSKLE--HFETDEKVRTISLFGEVWGIGPATALKFY---EKGH---------- 360

Query: 361 IGPATALRLYDKGCRTLDDLQKE-SLTHAQKIGLKYFDDIKQRIPRNEVQDMESLLKKAG 420
                         RTL+DL+ E SLTH+QK+GLKYFDDIK RIPR+EVQ+ME LL+K G
Sbjct: 361 --------------RTLEDLKNEDSLTHSQKLGLKYFDDIKTRIPRHEVQEMELLLQKTG 420

Query: 421 EDVLPGVLIVCGGSFRRGKSSCGDMDIVITHPDGKRFDSTDNHYGLTQTLTDIKNLCIRL 480
           E++LPGV I+CGGS+RRGK+SCGD+DIVITHPDGK        Y   + L D+K L   L
Sbjct: 421 EEILPGVNILCGGSYRRGKASCGDLDIVITHPDGKSHKGFLTRY--VKRLKDMKFLREDL 480

Query: 481 L---------------------------------QVYPRDIYAFGLLAWTGNDVLNRRYA 523
           +                                 +VYPRDIYAFGL+AWTGNDVLNRR  
Sbjct: 481 IFSTHSEEGTDSGVDTYFGLCTYPGQELRHRIDLKVYPRDIYAFGLVAWTGNDVLNRRLR 539

[Close]

BLAST of Cp4.1LG01g03980 vs. NCBI nr
Match: gi|835957732|ref|XP_012700519.1| (PREDICTED: DNA polymerase beta isoform X1 [Setaria italica])

HSP 1 Score: 401.4 bits (1030), Expect = 2.5e-108
Identity = 256/618 (41.42%), Postives = 343/618 (55.50%), Query Frame = 1


Query: 1   MAPKRSKSQNLL---QDPHGMFAGMVVLLIEKGVQARRLQIWKQKLVQMGACIEDRLSKR 60
           MAPKR  ++      +DP GMF G+   ++  GVQ RRL++WKQ+LVQMG  + +++ K 
Sbjct: 1   MAPKRKPARGAAAEERDPDGMFRGVSAFIVPHGVQTRRLEVWKQRLVQMGGRVVEKVDKG 60

Query: 61  -----VSHIFAATSDALLQKLDGERLARFEGKVLSYEWLEDSLRSGERASEDLYTV---- 120
                 +H+ A  + ALL++LD   L RF G V+S+EWLE+ L+SG+R  E  + +    
Sbjct: 61  GAAGGANHVLAMDAKALLRELDAAWLHRFRGSVVSFEWLEECLKSGKRLPEHKFAINYEG 120

Query: 121 -----KVGLDGENGRDEPQPSISKKLKLSPNNSEEGSVESGGDSNAPTLVTKTATDQTVT 180
                K   +G++G  +     +K+ K+S  +  +    SGGD    +  +        T
Sbjct: 121 EFKPKKAAGNGDSGASQS----AKRSKISSEDLGDQQRTSGGDREEHSDASADKGSGVET 180

Query: 181 NPRT---SDSLNSNVKLVQTSMS--------------YSPPDLNKNITEIFGKLINIYRA 240
            P     S S + + K    S                Y+P DLN+NIT IFG+LI+IYRA
Sbjct: 181 KPNQYAISQSSSGDTKNTVASHGTFDIEEASSGGPSIYAPADLNRNITSIFGRLIDIYRA 240

Query: 241 LGDERRSFSYYKAIPVIEKLPFKIESIDQVKHLPAIGKSLQDHGWPVLARFFLDLRLLPT 300
           LG++RRSFSYYKAIPVIEKLPFKIES +QVK LP IGKSL+DH   ++    L       
Sbjct: 241 LGEDRRSFSYYKAIPVIEKLPFKIESAEQVKDLPTIGKSLRDHINEIVTTGKL------- 300

Query: 301 SAGLHWKSISAWGRTGHVLDIIVLNALQFVYGLIIERLCIVLQIQEISTTGKLSKLEHFE 360
           S   H+++     +  H+L                    IV  ++ +ST+ + S      
Sbjct: 301 SKLEHFENDE---KCQHLLH-------------------IVASVKSLSTSTQFSL----- 360

Query: 361 TDEKVHTISLFGEVWGIGPATALRLYDKGCRTLDDLQK-ESLTHAQKIGLKYFDDIKQRI 420
              KV TISLFGEVWG+GPATA++LY+KG RTLDDL+K ESLT+AQ+IGLKYFDDIKQRI
Sbjct: 361 ---KVRTISLFGEVWGVGPATAVKLYEKGHRTLDDLRKDESLTNAQRIGLKYFDDIKQRI 420

Query: 421 PRNEVQDMESLLKKAGEDVLPGVLIVCGGSFRRGKSSCGDMDIVITHPDGKRFDSTDNHY 480
           PR+EV +ME +L+  G+D+LPGV+IVCGGS+RRGK++CGDMDIVITHPDG      ++H 
Sbjct: 421 PRHEVSEMEKILQDVGKDILPGVIIVCGGSYRRGKATCGDMDIVITHPDG------ESHV 480

Query: 481 G----LTQTLTDIKNLCIRLL---------------------------------QVYPRD 523
           G      Q L +I  L   L+                                 +VYPR+
Sbjct: 481 GFLPKFVQRLKEINFLREDLIFSIHSVDGTDSGVDTYFGLCTYPGRELRHRIDLKVYPRN 540

[Close]

BLAST of Cp4.1LG01g03980 vs. NCBI nr
Match: gi|743822211|ref|XP_011021636.1| (PREDICTED: DNA polymerase lambda isoform X3 [Populus euphratica])

HSP 1 Score: 387.5 bits (994), Expect = 3.7e-104
Identity = 255/598 (42.64%), Postives = 331/598 (55.35%), Query Frame = 1


Query: 1   MAPKRSKSQNLLQDPHGMFAGMVVLLIEKGVQARRLQIWKQKLVQMGACIEDRLSKRVSH 60
           MAPKR +S ++  DP G+F+GMVV L+E GVQ+RRLQ                       
Sbjct: 1   MAPKRKRSPSI--DPQGIFSGMVVFLVETGVQSRRLQ----------------------- 60

Query: 61  IFAATSDALLQKLDGERLA-RFEGKVLSYEWLEDSLRSGERASEDLYTVKVGLDGENGRD 120
                  ALLQ+L G  L  RF+ +VL Y+WLEDSLRSGE+ SED Y + V ++GEN +D
Sbjct: 61  -------ALLQQLHGHHLLKRFKPRVLLYQWLEDSLRSGEKVSEDQYHLLVDMEGENTKD 120

Query: 121 EP------QPSISKKLKLSPNNSE--------EGSVESGGDS---NAPTLVTKTATDQTV 180
                     + S   +LS +N +        +   E+ G S   N+P     +   QT+
Sbjct: 121 RSLFLKLVNENTSSADELSHHNEKIKSDAKKFKSDAENKGLSEVPNSPGSSDSSPLSQTL 180

Query: 181 TNPRTSDSLNSNVKLVQTSMSYSPPDLNKNITEIFGKLINIYRALGDERRSFSYYKAIPV 240
           TNP  S +L+S++     S+ YSPPDLN+NITEIFGKLINIYRALGD+RRSFSYYKAIPV
Sbjct: 181 TNPIPSSTLHSDL-----SLPYSPPDLNRNITEIFGKLINIYRALGDDRRSFSYYKAIPV 240

Query: 241 IEKLPFKIESIDQVKHLPAIGKSLQDHGWPVLARFFLDLRLLPTSAGLHWKSISAWGRTG 300
           +EKLPFKIES DQVK LP IGKS+QDH            +++  S  +  + I   G+  
Sbjct: 241 VEKLPFKIESADQVKDLPGIGKSMQDH------------KIMGASGCMQIQEIVTTGK-- 300

Query: 301 HVLDIIVLNALQFVYGLIIERLCIVLQIQEISTTGKLSKLEHFETDEKVHTISLFGEVWG 360
                  L+ L+  +    E++  +    E+   G  + L+ +   EK H          
Sbjct: 301 -------LSKLE--HFETDEKVRTISLFGEVWGIGPATALKFY---EKGH---------- 360

Query: 361 IGPATALRLYDKGCRTLDDLQKE-SLTHAQKIGLKYFDDIKQRIPRNEVQDMESLLKKAG 420
                         RTL+DL+ E SLTH+QK+GLKYFDDIK RIPR+EVQ+ME LL+K G
Sbjct: 361 --------------RTLEDLKNEDSLTHSQKLGLKYFDDIKTRIPRHEVQEMELLLQKTG 420

Query: 421 EDVLPGVLIVCGGSFRRGKSSCGDMDIVITHPDGKRFDSTDNHYGLTQTLTDIKNLCIRL 480
           E++LPGV I+CGGS+RRGK+SCGD+DIVITHPDGK        Y   + L D+K L   L
Sbjct: 421 EEILPGVNILCGGSYRRGKASCGDLDIVITHPDGKSHKGFLTRY--VKRLKDMKFLREDL 480

Query: 481 L---------------------------------QVYPRDIYAFGLLAWTGNDVLNRRYA 523
           +                                 +VYPRDIYAFGL+AWTGNDVLNRR  
Sbjct: 481 IFSTHSEEGTDSGVDTYFGLCTYPGQELRHRIDLKVYPRDIYAFGLVAWTGNDVLNRRLR 509

[Close]

BLAST of Cp4.1LG01g03980 vs. NCBI nr
Match: gi|659090882|ref|XP_008446253.1| (PREDICTED: DNA polymerase beta isoform X1 [Cucumis melo])

HSP 1 Score: 383.3 bits (983), Expect = 7.0e-103
Identity = 205/258 (79.46%), Postives = 223/258 (86.43%), Query Frame = 1


Query: 1   MAPKRSKSQNLLQDPHGMFAGMVVLLIEKGVQARRLQIWKQKLVQMGACIEDRLSKRVSH 60
           MAPKR KSQ+L +DPHGMFAGMVV L+EKGVQ RRLQIWKQKLVQMGA IE+RLSK VSH
Sbjct: 1   MAPKRRKSQSLSEDPHGMFAGMVVFLVEKGVQTRRLQIWKQKLVQMGASIEERLSKMVSH 60

Query: 61  IFAATSDALLQKLDGERLARFEGKVLSYEWLEDSLRSGERASEDLYTVKVGLDGENGRDE 120
           IFA++SDALL+K+D  RLARF+GKVLSY+WLEDSL SGE+ASEDLYTVKVGLD E+GRD 
Sbjct: 61  IFASSSDALLEKVDSARLARFKGKVLSYQWLEDSLSSGEKASEDLYTVKVGLD-EDGRDN 120

Query: 121 PQPSISKKLKLSPNNSEEGSVESGGDSNAPTLVTKTAT---------DQTVTNPRTSDSL 180
           PQ S  KKLKLSPNNSE  S ESGGDS+A TLVTKTAT          QTVT+PRTS S+
Sbjct: 121 PQQSTPKKLKLSPNNSEAVSFESGGDSDASTLVTKTATGLEDSKLSIGQTVTSPRTSASV 180

Query: 181 NSNVKLVQTSMSYSPPDLNKNITEIFGKLINIYRALGDERRSFSYYKAIPVIEKLPFKIE 240
            +N     TS+SYSPPD+NKNITEIFGKLINIYRALGDERRSFSYYKAIPVIEKLPFKIE
Sbjct: 181 GNN-----TSLSYSPPDMNKNITEIFGKLINIYRALGDERRSFSYYKAIPVIEKLPFKIE 240

Query: 241 SIDQVKHLPAIGKSLQDH 250
           SIDQVKHLPAIGKSLQDH
Sbjct: 241 SIDQVKHLPAIGKSLQDH 252

[Close]

BLAST of Cp4.1LG01g03980 vs. NCBI nr
Match: gi|449435380|ref|XP_004135473.1| (PREDICTED: DNA polymerase lambda isoform X1 [Cucumis sativus])

HSP 1 Score: 379.8 bits (974), Expect = 7.7e-102
Identity = 201/258 (77.91%), Postives = 223/258 (86.43%), Query Frame = 1


Query: 1   MAPKRSKSQNLLQDPHGMFAGMVVLLIEKGVQARRLQIWKQKLVQMGACIEDRLSKRVSH 60
           MAPKR KSQ+L +DPHGMFAGMVV L+EKGVQ RRLQIWKQKLVQMGA IE+RLSK VSH
Sbjct: 1   MAPKRRKSQSLSEDPHGMFAGMVVFLVEKGVQTRRLQIWKQKLVQMGASIEERLSKMVSH 60

Query: 61  IFAATSDALLQKLDGERLARFEGKVLSYEWLEDSLRSGERASEDLYTVKVGLDGENGRDE 120
           IFA++ DALL+K+DG RLARF+GKVLSY+WLEDSL SGE+ASEDLYTVKVGLD E+GRD+
Sbjct: 61  IFASSLDALLEKVDGARLARFKGKVLSYQWLEDSLSSGEKASEDLYTVKVGLD-EDGRDK 120

Query: 121 PQPSISKKLKLSPNNSEEGSVESGGDSNAPTLVTKTAT---------DQTVTNPRTSDSL 180
           PQ S  KKL LSPNNSE  S ESGGDS+A TLVTKTAT          QTVT+PRTSD +
Sbjct: 121 PQQSTPKKLNLSPNNSEAVSFESGGDSDASTLVTKTATGLEDSKLSIGQTVTSPRTSDFV 180

Query: 181 NSNVKLVQTSMSYSPPDLNKNITEIFGKLINIYRALGDERRSFSYYKAIPVIEKLPFKIE 240
            +N+     ++SYSPPD+NKNITEIFGKLINIYRALGDERRSFSYYKAIPVIEKLPF+IE
Sbjct: 181 GNNI-----ALSYSPPDMNKNITEIFGKLINIYRALGDERRSFSYYKAIPVIEKLPFRIE 240

Query: 241 SIDQVKHLPAIGKSLQDH 250
           SIDQVKHLPAIGKSLQDH
Sbjct: 241 SIDQVKHLPAIGKSLQDH 252

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g03980 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DPOLB_DANRE	9.9e-33	35.32	DNA polymerase beta OS=Danio rerio GN=polb PE=2 SV=2	[more]
DPOLB_XENLA	3.2e-31	32.71	DNA polymerase beta OS=Xenopus laevis GN=polb PE=1 SV=3	[more]
DPOLB_RAT	1.8e-29	32.22	DNA polymerase beta OS=Rattus norvegicus GN=Polb PE=1 SV=4	[more]
DPOLL_MACFA	3.0e-29	33.46	DNA polymerase lambda OS=Macaca fascicularis GN=POLL PE=2 SV=1	[more]
DPOLL_HUMAN	3.9e-29	33.46	DNA polymerase lambda OS=Homo sapiens GN=POLL PE=1 SV=1	[more]

BLAST of Cp4.1LG01g03980 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQD3_CUCSA	5.4e-102	77.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603350 PE=4 SV=1	[more]
A0A0J8BWQ9_BETVU	8.6e-84	45.82	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g181170 PE=4 S...	[more]
A0A059D505_EUCGR	3.9e-76	57.25	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02561 PE=4 SV=1	[more]
A0A067JBU8_JATCU	2.5e-75	57.30	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21772 PE=4 SV=1	[more]
A0A061E5Q9_THECC	5.6e-75	56.51	DNA polymerase lambda (POLL) isoform 4 OS=Theobroma cacao GN=TCM_010205 PE=4 SV=...	[more]

BLAST of Cp4.1LG01g03980 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G10520.1	2.4e-77	55.76	DNA polymerase lambda (POLL)	[more]

BLAST of Cp4.1LG01g03980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|743822207\|ref\|XP_011021634.1\|	6.7e-122	46.15	PREDICTED: DNA polymerase lambda isoform X1 [Populus euphratica]	[more]
gi\|835957732\|ref\|XP_012700519.1\|	2.5e-108	41.42	PREDICTED: DNA polymerase beta isoform X1 [Setaria italica]	[more]
gi\|743822211\|ref\|XP_011021636.1\|	3.7e-104	42.64	PREDICTED: DNA polymerase lambda isoform X3 [Populus euphratica]	[more]
gi\|659090882\|ref\|XP_008446253.1\|	7.0e-103	79.46	PREDICTED: DNA polymerase beta isoform X1 [Cucumis melo]	[more]
gi\|449435380\|ref\|XP_004135473.1\|	7.7e-102	77.91	PREDICTED: DNA polymerase lambda isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016779	nucleotidyltransferase activity
GO:0034061	DNA polymerase activity
GO:0003887	DNA-directed DNA polymerase activity
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006281	DNA repair

Vocabulary: **INTERPRO**
Term	Definition
IPR028207	DNA_pol_B_palm_palm
IPR027421	DNA_pol_lamdba_lyase_dom_sf
IPR022312	DNA_pol_X
IPR019843	DNA_pol-X_BS
IPR018944	DNA_pol_lambd_fingers_domain
IPR010996	DNA_pol_b-like_N
IPR002054	DNA-dir_DNA_pol_X
IPR002008	DNA_pol_X_beta-like
IPR001357	BRCT_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022402	cell cycle process
biological_process	GO:0006281	DNA repair
biological_process	GO:0097510	base-excision repair, AP site formation via deaminated base removal
biological_process	GO:0007062	sister chromatid cohesion
biological_process	GO:0033044	regulation of chromosome organization
biological_process	GO:0007131	reciprocal meiotic recombination
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0042138	meiotic DNA double-strand break formation
biological_process	GO:0045132	meiotic chromosome segregation
biological_process	GO:0006303	double-strand break repair via nonhomologous end joining
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:1902589	single-organism organelle organization
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005634	nucleus
cellular_component	GO:0042575	DNA polymerase complex
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0034061	DNA polymerase activity
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0051575	5'-deoxyribose-5-phosphate lyase activity
molecular_function	GO:0030145	manganese ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g03980.1	Cp4.1LG01g03980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001357	BRCT domain	GENE3D	G3DSA:3.40.50.10190		coord: 31..110 score: 1.
IPR001357	BRCT domain	PROFILE	PS50172	BRCT	coord: 14..108 score: 14
IPR001357	BRCT domain	unknown	SSF52113	BRCT domain	coord: 8..109 score: 9.81
IPR002008	DNA polymerase family X, beta-like	PRINTS	PR00870	DNAPOLXBETA	coord: 372..386 score: 1.1E-11coord: 412..431 score: 1.1
IPR002054	DNA-directed DNA polymerase X	SMART	SM00483	polxneu3	coord: 188..521 score: 2.6
IPR010996	DNA polymerase beta-like, N-terminal domain	PFAM	PF14716	HHH_8	coord: 190..249 score: 4.2
IPR010996	DNA polymerase beta-like, N-terminal domain	unknown	SSF47802	DNA polymerase beta, N-terminal domain-like	coord: 184..248 score: 1.24
IPR018944	DNA polymerase lambda, fingers domain	PFAM	PF10391	DNA_pol_lambd_f	coord: 336..381 score: 1.3
IPR019843	DNA polymerase family X, binding site	PROSITE	PS00522	DNA_POLYMERASE_X	coord: 414..433 scor
IPR022312	DNA polymerase family X	PRINTS	PR00869	DNAPOLX	coord: 425..433 score: 1.5E-8coord: 411..425 score: 1.5E-8coord: 342..359 score: 1.
IPR027421	DNA polymerase family X lyase domain	GENE3D	G3DSA:1.10.150.110		coord: 183..249 score: 4.7
IPR028207	DNA polymerase beta, palm domain	PFAM	PF14792	DNA_pol_B_palm	coord: 384..449 score: 7.1
None	No IPR available	GENE3D	G3DSA:1.10.150.20		coord: 329..383 score: 2.2
None	No IPR available	GENE3D	G3DSA:3.30.460.10		coord: 384..450 score: 7.6
None	No IPR available	PANTHER	PTHR11276	DNA POLYMERASE TYPE-X FAMILY MEMBER	coord: 305..522 score: 6.0E-131coord: 1..244 score: 6.0E
None	No IPR available	PANTHER	PTHR11276:SF1	DNA POLYMERASE IV	coord: 1..244 score: 6.0E-131coord: 305..522 score: 6.0E
None	No IPR available	unknown	SSF81301	Nucleotidyltransferase	coord: 384..521 score: 1.96
None	No IPR available	unknown	SSF81585	PsbU/PolX domain-like	coord: 328..384 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g03980	Cucsa.285760	Cucumber (Gy14) v1	cgycpeB0755
Cp4.1LG01g03980	CmaCh04G002990	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g03980	CmoCh04G003130	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g03980	Cla010116	Watermelon (97103) v1	cpewmB434
Cp4.1LG01g03980	Csa5G603350	Cucumber (Chinese Long) v2	cpecuB419
Cp4.1LG01g03980	ClCG05G025020	Watermelon (Charleston Gray)	cpewcgB395
Cp4.1LG01g03980	CSPI05G23000	Wild cucumber (PI 183967)	cpecpiB419
Cp4.1LG01g03980	Lsi04G005120	Bottle gourd (USVL1VR-Ls)	cpelsiB363
Cp4.1LG01g03980	MELO3C034123.2	Melon (DHL92) v3.6.1	cpemedB439
Cp4.1LG01g03980	CsaV3_5G031880	Cucumber (Chinese Long) v3	cpecucB0521
Cp4.1LG01g03980	Bhi07G001350	Wax gourd	cpewgoB0571
Cp4.1LG01g03980	CsGy5G022470	Cucumber (Gy14) v2	cgybcpeB631
Cp4.1LG01g03980	Carg07977	Silver-seed gourd	carcpeB0527

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g03980	Silver-seed gourd	carcpeB1178
Cp4.1LG01g03980	Cucumber (Chinese Long) v3	cpecucB0550
Cp4.1LG01g03980	Cucurbita pepo (Zucchini)	cpecpeB375
Cp4.1LG01g03980	Cucurbita maxima (Rimu)	cmacpeB724
Cp4.1LG01g03980	Cucurbita moschata (Rifu)	cmocpeB676
Cp4.1LG01g03980	Wild cucumber (PI 183967)	cpecpiB445
Cp4.1LG01g03980	Cucumber (Chinese Long) v2	cpecuB444
Cp4.1LG01g03980	Melon (DHL92) v3.5.1	cpemeB380