Cp4.1LG01g03330 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g03330
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description60S ribosomal protein L13
LocationCp4.1LG01 : 1905536 .. 1906391 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTCGAGGGTTCATGTCACCATTTTAGCTTCAGGTGATTCTACTCTTGAGGAGCTTGCAAATGCCACTCGAGTCCAAGTACCATACCTACGTATTGGACGTGAAAAGGTACCGGTCGAGCTCGTCAAAGTCACTGAAGAGATGAAATCATTCAAGGCATACGACAAGCTACGTATTGAGAGGACAAACGAACGAGACGTTGGTGCTAGATTGAAGAGGGCAGCAGAGGGGAGACGGAAGAGAAAAAATAGATTGGTAGAGCAACTGTTTAGAGGTCGTTCTATTAAAGCATAAATGAAAGTGAATTTCTAACGCTCAACATGTTGTACTACGTCCAAACAAAAATACCCAATTTTTAAATATATGAAAGTGGGAGGGTGAAATTGTAATAATATTAGAGTCTAGGGGTGGACTGTGCAATTCGCCCAATTGAAAATTAGTATATATAGGATTTAAACGGAGGCAAAATTGATAGATAAATAGGCGGGAAACTCGAGGGAGGAAGGGAGCGAAGCAGCGGCCGGTGGAATCATCCGCTGCTAGCTCTCGTCTTCCTCATTCCAGACTGCGGCGGCGGCGGCGGCGGCGAACTTCAACCTTATCAGAAACTCTGTAAGCTCTCTCTTCCTCTCTTTGCTGTTGCACGATTTCTGGAATCCGCTTGCAAGAAGAATGTAAGGCTTCGCTTTCTTTTTTAAAGTTTATCGAATCATTGTCCGGAAGTATCGTCTCCTTGTTGCCTTTTGTCTTTGCACGTCCAGGTTACGGCCGCATAGTTCAACCGTGTTTTAGCAACTCCATAAGCTCTGTCTCTGCTGTTGCAAAGTTTTTGGAATCGGCTGTGGAGAAATAA

mRNA sequence

ATGTCCTCGAGGGTTCATGTCACCATTTTAGCTTCAGGTGATTCTACTCTTGAGGAGCTTGCAAATGCCACTCGAGTCCAAGTACCATACCTACGTATTGGACGTGAAAAGGTACCGGTCGAGCTCGTCAAAGTCACTGAAGAGATGAAATCATTCAAGGCATACGACAAGCTACGTATTGAGAGGACAAACGAACGAGACGTTGGTGCTAGATTGAAGAGGGCAGCAGAGGGGAGACGGAAGAGAAAAAATAGATTGGTAGAGCAACTGTTTAGAGACTGCGGCGGCGGCGGCGGCGGCGAACTTCAACCTTATCAGAAACTCTGTTACGGCCGCATAGTTCAACCGTGTTTTAGCAACTCCATAAGCTCTGTCTCTGCTGTTGCAAAGTTTTTGGAATCGGCTGTGGAGAAATAA

Coding sequence (CDS)

ATGTCCTCGAGGGTTCATGTCACCATTTTAGCTTCAGGTGATTCTACTCTTGAGGAGCTTGCAAATGCCACTCGAGTCCAAGTACCATACCTACGTATTGGACGTGAAAAGGTACCGGTCGAGCTCGTCAAAGTCACTGAAGAGATGAAATCATTCAAGGCATACGACAAGCTACGTATTGAGAGGACAAACGAACGAGACGTTGGTGCTAGATTGAAGAGGGCAGCAGAGGGGAGACGGAAGAGAAAAAATAGATTGGTAGAGCAACTGTTTAGAGACTGCGGCGGCGGCGGCGGCGGCGAACTTCAACCTTATCAGAAACTCTGTTACGGCCGCATAGTTCAACCGTGTTTTAGCAACTCCATAAGCTCTGTCTCTGCTGTTGCAAAGTTTTTGGAATCGGCTGTGGAGAAATAA

Protein sequence

MSSRVHVTILASGDSTLEELANATRVQVPYLRIGREKVPVELVKVTEEMKSFKAYDKLRIERTNERDVGARLKRAAEGRRKRKNRLVEQLFRDCGGGGGGELQPYQKLCYGRIVQPCFSNSISSVSAVAKFLESAVEK
Homology
[Close]
BLAST of Cp4.1LG01g03330 vs. Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.4e-17
Identity = 48/72 (66.67%), Postives = 58/72 (80.56%), Query Frame = 1 

Query: 12  SGDSTLEELANATRVQVPYLRIGREKVPVELVKVTEEMKSFKAYDKLRIERTNERDVGAR 71
           +GDST EELANAT+VQ  YL I REK  +ELVK+T EMKSFKA+DK+R+ERTN+R  GAR
Sbjct: 134 AGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAGAR 193

Query: 72  LKRAAEGRRKRK 84
            KRAAE  ++ K
Sbjct: 194 AKRAAEAEKEEK 205

[Close]
BLAST of Cp4.1LG01g03330 vs. Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 6.5e-16
Identity = 45/72 (62.50%), Postives = 56/72 (77.78%), Query Frame = 1 

Query: 12  SGDSTLEELANATRVQVPYLRIGREKVPVELVKVTEEMKSFKAYDKLRIERTNERDVGAR 71
           +GDST EELANAT+VQ  Y+ I REK  +ELVK+T EMKS  AYDK+R+ERTN+R  GAR
Sbjct: 134 AGDSTAEELANATQVQGDYMPIVREKQAMELVKLTSEMKSVNAYDKIRLERTNKRHAGAR 193

Query: 72  LKRAAEGRRKRK 84
            KRAA+  ++ K
Sbjct: 194 AKRAADAEKEEK 205

[Close]
BLAST of Cp4.1LG01g03330 vs. Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-15
Identity = 45/72 (62.50%), Postives = 56/72 (77.78%), Query Frame = 1 

Query: 12  SGDSTLEELANATRVQVPYLRIGREKVPVELVKVTEEMKSFKAYDKLRIERTNERDVGAR 71
           +GDST EELANAT+VQ  Y+ I REK   ELVK+T EMKS KA+DK+R+ERTN+R  GAR
Sbjct: 134 AGDSTAEELANATQVQGDYMPIVREKHATELVKLTTEMKSVKAFDKIRLERTNKRHAGAR 193

Query: 72  LKRAAEGRRKRK 84
            KRAA+  ++ K
Sbjct: 194 AKRAADAEKEEK 205

[Close]
BLAST of Cp4.1LG01g03330 vs. Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.2e-15
Identity = 43/72 (59.72%), Postives = 55/72 (76.39%), Query Frame = 1 

Query: 12  SGDSTLEELANATRVQVPYLRIGREKVPVELVKVTEEMKSFKAYDKLRIERTNERDVGAR 71
           +GDST EELANAT+VQ  Y+ I   K  +ELVK+T ++K+FKAYDK+R+ERTN R  GAR
Sbjct: 134 AGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIRLERTNARHAGAR 193

Query: 72  LKRAAEGRRKRK 84
            KRAAE  ++ K
Sbjct: 194 AKRAAEAEKEEK 205

[Close]
BLAST of Cp4.1LG01g03330 vs. Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-12
Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 1 

Query: 13  GDSTLEELANATRVQVPYLRIGREKVPVELVKVTEEMKSFKAYDKLRIERTNERDVGARL 72
           GDS  +ELANAT+VQV ++ I RE   +ELVK+T +MK F AYDK+R+E  N+R  G R 
Sbjct: 135 GDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVRA 194

Query: 73  KRAAEGRRKRK 84
           KRAAE  ++ K
Sbjct: 195 KRAAEAEKEEK 205

[Close]
BLAST of Cp4.1LG01g03330 vs. TrEMBL
Match: A0A0A0KU76_CUCSA (60S ribosomal protein L13 OS=Cucumis sativus GN=Csa_4G025200 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.2e-20
Identity = 57/72 (79.17%), Postives = 62/72 (86.11%), Query Frame = 1 

Query: 12  SGDSTLEELANATRVQVPYLRIGREKVPVELVKVTEEMKSFKAYDKLRIERTNERDVGAR 71
           +GDST EELANAT+VQ PYL IGREK  VELVKVTEEMKSFKAYDKLR+ERTN R VGAR
Sbjct: 134 AGDSTPEELANATQVQGPYLPIGREKASVELVKVTEEMKSFKAYDKLRVERTNARHVGAR 193

Query: 72  LKRAAEGRRKRK 84
           LKRAAE  ++ K
Sbjct: 194 LKRAAEAEKEDK 205

[Close]
BLAST of Cp4.1LG01g03330 vs. TrEMBL
Match: C6SYZ4_SOYBN (60S ribosomal protein L13 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.3e-18
Identity = 52/78 (66.67%), Postives = 68/78 (87.18%), Query Frame = 1 

Query: 12  SGDSTLEELANATRVQVPYLRIGREKVPVELVKVTEEMKSFKAYDKLRIERTNERDVGAR 71
           +GDS+LEELANAT+VQ P+L I REK  V+LVKVT+EMK+FKAY KLR+ERTN+R  GAR
Sbjct: 135 AGDSSLEELANATQVQGPFLPIVREKPTVDLVKVTDEMKAFKAYYKLRLERTNKRHHGAR 194

Query: 72  LKRAAEGRRKRKNRLVEQ 90
           LK+AAE RR+ +N+++E+
Sbjct: 195 LKKAAEQRRRTRNKVLEK 212

[Close]
BLAST of Cp4.1LG01g03330 vs. TrEMBL
Match: A0A0B0PH41_GOSAR (60S ribosomal protein L13 OS=Gossypium arboreum GN=F383_10621 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.3e-18
Identity = 51/72 (70.83%), Postives = 61/72 (84.72%), Query Frame = 1 

Query: 12  SGDSTLEELANATRVQVPYLRIGREKVPVELVKVTEEMKSFKAYDKLRIERTNERDVGAR 71
           +GDST EELA AT+VQ PY+RI REK  VELVKVTE+MKSFKAY+KLR+ER NER +GAR
Sbjct: 135 AGDSTAEELATATQVQGPYMRISREKPSVELVKVTEDMKSFKAYNKLRVERANERHIGAR 194

Query: 72  LKRAAEGRRKRK 84
           LK+AAE  ++ K
Sbjct: 195 LKKAAEAEKEDK 206

[Close]
BLAST of Cp4.1LG01g03330 vs. TrEMBL
Match: A0A0V0HGF3_SOLCH (60S ribosomal protein L13 OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 8.3e-18
Identity = 53/78 (67.95%), Postives = 62/78 (79.49%), Query Frame = 1 

Query: 6   HVTILASGDSTLEELANATRVQVPYLRIGREKVPVELVKVTEEMKSFKAYDKLRIERTNE 65
           H   + +GDS+ EELANAT+VQVPYL I RE+  +ELVKVT+EMKSFKAY KLRIERTN 
Sbjct: 128 HAKKVKAGDSSAEELANATQVQVPYLPIVREQPAIELVKVTDEMKSFKAYGKLRIERTNA 187

Query: 66  RDVGARLKRAAEGRRKRK 84
           R VG RLKRAAE  ++ K
Sbjct: 188 RHVGVRLKRAAEAEKEEK 205

[Close]
BLAST of Cp4.1LG01g03330 vs. TrEMBL
Match: A0A0B0PB66_GOSAR (60S ribosomal protein L13 OS=Gossypium arboreum GN=F383_10720 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.1e-17
Identity = 51/72 (70.83%), Postives = 60/72 (83.33%), Query Frame = 1 

Query: 12  SGDSTLEELANATRVQVPYLRIGREKVPVELVKVTEEMKSFKAYDKLRIERTNERDVGAR 71
           +GDST EELA AT+VQ PY+ I REK  VELVKVTEEMKSFKAY+KLR+ERTN R +GAR
Sbjct: 135 AGDSTAEELATATQVQGPYMPISREKPSVELVKVTEEMKSFKAYNKLRVERTNARYIGAR 194

Query: 72  LKRAAEGRRKRK 84
           LK+AAE  ++ K
Sbjct: 195 LKKAAEAEKEDK 206

[Close]
BLAST of Cp4.1LG01g03330 vs. TAIR10
Match: AT3G49010.1 (AT3G49010.1 breast basic conserved 1)

HSP 1 Score: 89.4 bits (220), Expect = 1.9e-18
Identity = 48/72 (66.67%), Postives = 58/72 (80.56%), Query Frame = 1 

Query: 12  SGDSTLEELANATRVQVPYLRIGREKVPVELVKVTEEMKSFKAYDKLRIERTNERDVGAR 71
           +GDST EELANAT+VQ  YL I REK  +ELVK+T EMKSFKA+DK+R+ERTN+R  GAR
Sbjct: 134 AGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAGAR 193

Query: 72  LKRAAEGRRKRK 84
            KRAAE  ++ K
Sbjct: 194 AKRAAEAEKEEK 205

[Close]
BLAST of Cp4.1LG01g03330 vs. TAIR10
Match: AT5G23900.1 (AT5G23900.1 Ribosomal protein L13e family protein)

HSP 1 Score: 82.4 bits (202), Expect = 2.4e-16
Identity = 43/72 (59.72%), Postives = 55/72 (76.39%), Query Frame = 1 

Query: 12  SGDSTLEELANATRVQVPYLRIGREKVPVELVKVTEEMKSFKAYDKLRIERTNERDVGAR 71
           +GDST EELANAT+VQ  Y+ I   K  +ELVK+T ++K+FKAYDK+R+ERTN R  GAR
Sbjct: 134 AGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIRLERTNARHAGAR 193

Query: 72  LKRAAEGRRKRK 84
            KRAAE  ++ K
Sbjct: 194 AKRAAEAEKEEK 205

[Close]
BLAST of Cp4.1LG01g03330 vs. TAIR10
Match: AT3G48960.1 (AT3G48960.1 Ribosomal protein L13e family protein)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-13
Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 1 

Query: 13  GDSTLEELANATRVQVPYLRIGREKVPVELVKVTEEMKSFKAYDKLRIERTNERDVGARL 72
           GDS  +ELANAT+VQV ++ I RE   +ELVK+T +MK F AYDK+R+E  N+R  G R 
Sbjct: 135 GDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVRA 194

Query: 73  KRAAEGRRKRK 84
           KRAAE  ++ K
Sbjct: 195 KRAAEAEKEEK 205

[Close]
BLAST of Cp4.1LG01g03330 vs. NCBI nr
Match: gi|778690354|ref|XP_011653106.1| (PREDICTED: 60S ribosomal protein L13-3 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 7.4e-20
Identity = 57/72 (79.17%), Postives = 62/72 (86.11%), Query Frame = 1 

Query: 12  SGDSTLEELANATRVQVPYLRIGREKVPVELVKVTEEMKSFKAYDKLRIERTNERDVGAR 71
           +GDST EELANAT+VQ PYL IGREK  VELVKVTEEMKSFKAYDKLR+ERTN R VGAR
Sbjct: 134 AGDSTPEELANATQVQGPYLPIGREKASVELVKVTEEMKSFKAYDKLRVERTNARHVGAR 193

Query: 72  LKRAAEGRRKRK 84
           LKRAAE  ++ K
Sbjct: 194 LKRAAEAEKEDK 205

[Close]
BLAST of Cp4.1LG01g03330 vs. NCBI nr
Match: gi|659107743|ref|XP_008453835.1| (PREDICTED: 60S ribosomal protein L13-3 [Cucumis melo])

HSP 1 Score: 100.9 bits (250), Expect = 1.8e-18
Identity = 54/72 (75.00%), Postives = 61/72 (84.72%), Query Frame = 1 

Query: 12  SGDSTLEELANATRVQVPYLRIGREKVPVELVKVTEEMKSFKAYDKLRIERTNERDVGAR 71
           +GDST EELANAT+VQ PYL IGREK  VELVKVTE+MKSFKAYDKLR+ER N R VGAR
Sbjct: 134 AGDSTPEELANATQVQGPYLPIGREKASVELVKVTEDMKSFKAYDKLRVERMNARHVGAR 193

Query: 72  LKRAAEGRRKRK 84
           LK+AAE  ++ K
Sbjct: 194 LKKAAEAEKEDK 205

[Close]
BLAST of Cp4.1LG01g03330 vs. NCBI nr
Match: gi|574584641|ref|NP_001276322.1| (60S ribosomal protein L13-1-like [Glycine max])

HSP 1 Score: 98.6 bits (244), Expect = 9.1e-18
Identity = 52/78 (66.67%), Postives = 68/78 (87.18%), Query Frame = 1 

Query: 12  SGDSTLEELANATRVQVPYLRIGREKVPVELVKVTEEMKSFKAYDKLRIERTNERDVGAR 71
           +GDS+LEELANAT+VQ P+L I REK  V+LVKVT+EMK+FKAY KLR+ERTN+R  GAR
Sbjct: 135 AGDSSLEELANATQVQGPFLPIVREKPTVDLVKVTDEMKAFKAYYKLRLERTNKRHHGAR 194

Query: 72  LKRAAEGRRKRKNRLVEQ 90
           LK+AAE RR+ +N+++E+
Sbjct: 195 LKKAAEQRRRTRNKVLEK 212

[Close]
BLAST of Cp4.1LG01g03330 vs. NCBI nr
Match: gi|728844794|gb|KHG24237.1| (60S ribosomal L13-2 [Gossypium arboreum])

HSP 1 Score: 98.6 bits (244), Expect = 9.1e-18
Identity = 51/72 (70.83%), Postives = 61/72 (84.72%), Query Frame = 1 

Query: 12  SGDSTLEELANATRVQVPYLRIGREKVPVELVKVTEEMKSFKAYDKLRIERTNERDVGAR 71
           +GDST EELA AT+VQ PY+RI REK  VELVKVTE+MKSFKAY+KLR+ER NER +GAR
Sbjct: 135 AGDSTAEELATATQVQGPYMRISREKPSVELVKVTEDMKSFKAYNKLRVERANERHIGAR 194

Query: 72  LKRAAEGRRKRK 84
           LK+AAE  ++ K
Sbjct: 195 LKKAAEAEKEDK 206

[Close]
BLAST of Cp4.1LG01g03330 vs. NCBI nr
Match: gi|694321435|ref|XP_009351877.1| (PREDICTED: 60S ribosomal protein L13-1 [Pyrus x bretschneideri])

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-17
Identity = 49/74 (66.22%), Postives = 62/74 (83.78%), Query Frame = 1 

Query: 10  LASGDSTLEELANATRVQVPYLRIGREKVPVELVKVTEEMKSFKAYDKLRIERTNERDVG 69
           + +GDS+ EELANAT++Q PYL I REK  VELVK+T+E+KSFKAYDKLR+ER N+R VG
Sbjct: 133 IKAGDSSAEELANATQLQAPYLPIAREKPTVELVKITDELKSFKAYDKLRVERMNQRHVG 192

Query: 70  ARLKRAAEGRRKRK 84
           ARLK+AAE  ++ K
Sbjct: 193 ARLKKAAEAEKEEK 206

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g03330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL131_ARATH3.4e-1766.6760S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1[more]
RL132_BRANA6.5e-1662.5060S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1[more]
RL131_BRANA1.1e-1562.5060S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1[more]
RL133_ARATH4.2e-1559.7260S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=1 SV=1[more]
RL132_ARATH2.0e-1254.93Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1[more]
BLAST of Cp4.1LG01g03330 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KU76_CUCSA5.2e-2079.1760S ribosomal protein L13 OS=Cucumis sativus GN=Csa_4G025200 PE=3 SV=1[more]
C6SYZ4_SOYBN6.3e-1866.6760S ribosomal protein L13 OS=Glycine max PE=2 SV=1[more]
A0A0B0PH41_GOSAR6.3e-1870.8360S ribosomal protein L13 OS=Gossypium arboreum GN=F383_10621 PE=3 SV=1[more]
A0A0V0HGF3_SOLCH8.3e-1867.9560S ribosomal protein L13 OS=Solanum chacoense PE=3 SV=1[more]
A0A0B0PB66_GOSAR4.1e-1770.8360S ribosomal protein L13 OS=Gossypium arboreum GN=F383_10720 PE=3 SV=1[more]
BLAST of Cp4.1LG01g03330 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G49010.11.9e-1866.67 breast basic conserved 1[more]
AT5G23900.12.4e-1659.72 Ribosomal protein L13e family protein[more]
AT3G48960.11.1e-1354.93 Ribosomal protein L13e family protein[more]
BLAST of Cp4.1LG01g03330 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778690354|ref|XP_011653106.1|7.4e-2079.17PREDICTED: 60S ribosomal protein L13-3 [Cucumis sativus][more]
gi|659107743|ref|XP_008453835.1|1.8e-1875.00PREDICTED: 60S ribosomal protein L13-3 [Cucumis melo][more]
gi|574584641|ref|NP_001276322.1|9.1e-1866.6760S ribosomal protein L13-1-like [Glycine max][more]
gi|728844794|gb|KHG24237.1|9.1e-1870.8360S ribosomal L13-2 [Gossypium arboreum][more]
gi|694321435|ref|XP_009351877.1|1.5e-1766.22PREDICTED: 60S ribosomal protein L13-1 [Pyrus x bretschneideri][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR001380Ribosomal_L13e
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g03330.1Cp4.1LG01g03330.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001380Ribosomal protein L13ePANTHERPTHR1172260S RIBOSOMAL PROTEIN L13coord: 13..88
score: 3.0
NoneNo IPR availablePANTHERPTHR11722:SF1SUBFAMILY NOT NAMEDcoord: 13..88
score: 3.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g03330Cucurbita pepo (Zucchini)cpecpeB234
Cp4.1LG01g03330Cucurbita pepo (Zucchini)cpecpeB403
Cp4.1LG01g03330Cucumber (Gy14) v1cgycpeB0191
Cp4.1LG01g03330Cucurbita maxima (Rimu)cmacpeB351
Cp4.1LG01g03330Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g03330Cucurbita moschata (Rifu)cmocpeB311
Cp4.1LG01g03330Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g03330Wild cucumber (PI 183967)cpecpiB398
Cp4.1LG01g03330Cucumber (Chinese Long) v2cpecuB401
Cp4.1LG01g03330Bottle gourd (USVL1VR-Ls)cpelsiB314
Cp4.1LG01g03330Bottle gourd (USVL1VR-Ls)cpelsiB340
Cp4.1LG01g03330Bottle gourd (USVL1VR-Ls)cpelsiB374
Cp4.1LG01g03330Watermelon (Charleston Gray)cpewcgB372
Cp4.1LG01g03330Watermelon (Charleston Gray)cpewcgB403
Cp4.1LG01g03330Watermelon (97103) v1cpewmB390
Cp4.1LG01g03330Watermelon (97103) v1cpewmB421
Cp4.1LG01g03330Melon (DHL92) v3.5.1cpemeB425
Cp4.1LG01g03330Cucumber (Gy14) v2cgybcpeB503
Cp4.1LG01g03330Melon (DHL92) v3.6.1cpemedB497
Cp4.1LG01g03330Silver-seed gourdcarcpeB0527
Cp4.1LG01g03330Silver-seed gourdcarcpeB1001
Cp4.1LG01g03330Silver-seed gourdcarcpeB1216
Cp4.1LG01g03330Cucumber (Chinese Long) v3cpecucB0498
Cp4.1LG01g03330Cucumber (Chinese Long) v3cpecucB0540
Cp4.1LG01g03330Wax gourdcpewgoB0477
Cp4.1LG01g03330Wax gourdcpewgoB0519