Cp4.1LG01g00970 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g00970
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG01 : 3318245 .. 3318565 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGATTGACCCCAGGCCCAACTTGCCAGACTTGGTTCAGCGACTTAGCCTTCTCTGGAACCTTTACAGTAGCAAAGATGGTGAACTGCTCCTGGGAGCATTCGGCGGCGACGTCCCAAACAGGGAAAGAAAGGGAGTGGGAAGGGAGGACAACAGAGTAGGAGGAGATGTTGAAGGTACGGACAGCAGGGGTACCTCCAGATTGGGAGGCAATCAGGGCTTGGGCTCCGATCATGCCGGTGTGGGTGGGGTTAACAGCCCAGGCAACCCATCCCTCCTCGTGCGGCGGCGTGGCAATGAAGGCGATGGAAAGAGATGA

mRNA sequence

ATGGGGATTGACCCCAGGCCCAACTTGCCAGACTTGGTTCAGCGACTTAGCCTTCTCTGGAACCTTTACAGTAGCAAAGATGGTGAACTGCTCCTGGGAGCATTCGGCGGCGACGTCCCAAACAGGGAAAGAAAGGGAGTGGGAAGGGAGGACAACAGAGTAGGAGGAGATGTTGAAGGTACGGACAGCAGGGGTACCTCCAGATTGGGAGGCAATCAGGGCTTGGGCTCCGATCATGCCGGTGTGGGTGGGGTTAACAGCCCAGGCAACCCATCCCTCCTCGTGCGGCGGCGTGGCAATGAAGGCGATGGAAAGAGATGA

Coding sequence (CDS)

ATGGGGATTGACCCCAGGCCCAACTTGCCAGACTTGGTTCAGCGACTTAGCCTTCTCTGGAACCTTTACAGTAGCAAAGATGGTGAACTGCTCCTGGGAGCATTCGGCGGCGACGTCCCAAACAGGGAAAGAAAGGGAGTGGGAAGGGAGGACAACAGAGTAGGAGGAGATGTTGAAGGTACGGACAGCAGGGGTACCTCCAGATTGGGAGGCAATCAGGGCTTGGGCTCCGATCATGCCGGTGTGGGTGGGGTTAACAGCCCAGGCAACCCATCCCTCCTCGTGCGGCGGCGTGGCAATGAAGGCGATGGAAAGAGATGA

Protein sequence

MGIDPRPNLPDLVQRLSLLWNLYSSKDGELLLGAFGGDVPNRERKGVGREDNRVGGDVEGTDSRGTSRLGGNQGLGSDHAGVGGVNSPGNPSLLVRRRGNEGDGKR

Homology

[Close]

BLAST of Cp4.1LG01g00970 vs. TrEMBL
Match: A0A0A0K6W3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G368160 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.8e-13
Identity = 47/105 (44.76%), Postives = 65/105 (61.90%), Query Frame = 1


Query: 2   GIDPRPNLPDLVQRLSLLWNLYSSKDGELLLGAFGGDVPNRERKGVGREDNRVGGDVEGT 61
           GI  RPNLP+LVQR  LL + + ++D + ++G  G  VP  + +  GR +  +  +VE T
Sbjct: 9   GIHRRPNLPNLVQRRRLLRHFHGNEDRKQIVGRLGCKVPEGKGERGGRTNGVIRSNVEST 68

Query: 62  DSRGTSRLGGNQGLGSDHAGVGGVNSPGNPSLLVRRRGNEGDGKR 107
           DS G     G +GLGS HAG GGV+ PG+P+     RG EGDG+R
Sbjct: 69  DSEGFGEESGEEGLGSSHAGGGGVDGPGDPTGGCGGRGEEGDGER 113

[Close]

BLAST of Cp4.1LG01g00970 vs. NCBI nr
Match: gi|700189431|gb|KGN44664.1| (hypothetical protein Csa_7G368160 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 4.0e-13
Identity = 47/105 (44.76%), Postives = 65/105 (61.90%), Query Frame = 1


Query: 2   GIDPRPNLPDLVQRLSLLWNLYSSKDGELLLGAFGGDVPNRERKGVGREDNRVGGDVEGT 61
           GI  RPNLP+LVQR  LL + + ++D + ++G  G  VP  + +  GR +  +  +VE T
Sbjct: 9   GIHRRPNLPNLVQRRRLLRHFHGNEDRKQIVGRLGCKVPEGKGERGGRTNGVIRSNVEST 68

Query: 62  DSRGTSRLGGNQGLGSDHAGVGGVNSPGNPSLLVRRRGNEGDGKR 107
           DS G     G +GLGS HAG GGV+ PG+P+     RG EGDG+R
Sbjct: 69  DSEGFGEESGEEGLGSSHAGGGGVDGPGDPTGGCGGRGEEGDGER 113

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g00970 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g00970 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6W3_CUCSA	2.8e-13	44.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G368160 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g00970 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g00970 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189431\|gb\|KGN44664.1\|	4.0e-13	44.76	hypothetical protein Csa_7G368160 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g00970.1	Cp4.1LG01g00970.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g00970	Cucurbita pepo (Zucchini)	cpecpeB236
Cp4.1LG01g00970	Cucumber (Gy14) v1	cgycpeB0494
Cp4.1LG01g00970	Cucurbita maxima (Rimu)	cmacpeB353
Cp4.1LG01g00970	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g00970	Cucurbita moschata (Rifu)	cmocpeB315
Cp4.1LG01g00970	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g00970	Wild cucumber (PI 183967)	cpecpiB396
Cp4.1LG01g00970	Cucumber (Chinese Long) v2	cpecuB399
Cp4.1LG01g00970	Bottle gourd (USVL1VR-Ls)	cpelsiB372
Cp4.1LG01g00970	Watermelon (Charleston Gray)	cpewcgB411
Cp4.1LG01g00970	Watermelon (97103) v1	cpewmB419
Cp4.1LG01g00970	Melon (DHL92) v3.5.1	cpemeB423
Cp4.1LG01g00970	Cucumber (Gy14) v2	cgybcpeB501
Cp4.1LG01g00970	Melon (DHL92) v3.6.1	cpemedB491
Cp4.1LG01g00970	Melon (DHL92) v3.6.1	cpemedB495
Cp4.1LG01g00970	Silver-seed gourd	carcpeB0061
Cp4.1LG01g00970	Silver-seed gourd	carcpeB0929
Cp4.1LG01g00970	Cucumber (Chinese Long) v3	cpecucB0496
Cp4.1LG01g00970	Wax gourd	cpewgoB0509