Cp4.1LG01g00870 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g00870
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPectin lyase-like superfamily protein
LocationCp4.1LG01 : 3374736 .. 3376296 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATGTCAAAACAAATCAAATCCATTTCAGAGAAGAAGAAGAAGAAGAAATGGGGTTGAAGAAATGTGGTGTTCTTCCGAGTTCGTGGGTTGTTTTCTTCTTGTTCTTGTTTTCCATTACAGAAGGAGTTCGAGTTGGCAGACCGAAGGTCTTCAATGTTGTTGGTTATGGAGCTATCCCGGACGGAACAACGGATAACTCTAAGGTAAGTCCGGTTCAAAATTGGATTCGTGGGTCATGTGGGTTGGGTCTAAACATTGTTGTCTTTTTTTTTAGGCATTTTTAGAAGCATGGAAGGATGCGTGTGAATGGAAGGGGAGGGGAAGGGTGTATGTCCCAAAAGGTACATTCAAGTTGAAAAGTGTTCTGTTTTTGGGGCCATGTGAAGGGCAAATGGCCTTTGTGATTAAGGGTATTTTAAAGGCTCCCACCGACATGTCTTTTCTCGCGTCCGACAGTTGGATAAACTTTCGATATGTCGATCAGTTGAGTGTCAGTGGAGGTGGTTCATTGGATGGTGAAGGATCTGTGGCTTGGCCACGAAATGAGTGCAAGAAAAACCCTAATTGCCAATCTCTTCCTACTGTCAGTTTTCTTCTCAATTCCCATTCCAATTTACCTTCTTTTTCTTTACCAATCTCGTAAATGTATTAACGTTTTGTGATTTTTCAGACGATGAGATTCGATTTTATAACGAATTCGAAAGTTCACCACGTGCACTCGATGAATAGCAAGAACAATCATTTCTTGCTCTTTGGATGTAGCAAGATGAACATTACGAAGATTCGTATTTCTGCTCCTAGTGATAGTCCTAATACGGATGGGATTAAGATTGGAAATTCTGATAATATTGATATTACAAACTCTATTATTGGTACTGGTGATGATTGCATTTCGATACTCTCCGGAAGCAATGATATCTATGTTTCGAACGTTGTTTGTGGCCCGGGACATGGTATTAGCATTGGAAGCTTGGGGAAGTATGACAAAGAGGATGTTTCGGGGATCACAGTGAGGAATTGTACTTTTAAGGACACGACTGATGGTGTGAGAATCAAGACATGGGCTACATCTGCAAATGTAAATGCGTATAACATACACTACGAAGATATTTTCATGAATGAGGTTGGAAACCCCATCATTATTGATCAACAATATTGCCCAGTTCCTCCATGCGACCAACGGGTAAGAATCATAATAGATATGTCGATTCTATTCTCTCATGCTATTGATTTTACTATTTAATGGTTTAAAGAGTAACAGACACGTTGAATAACGTTCCTTATTTGTGTGCAACGTTGATTTTTCGAATCTATTTTGTTGTGTTAGACGTCATCAGGGGTGCAAATAAGCAACGTGACGTTCAAAAACATATGGGGAAGTAGCAAATCAGCCTCAGCAGTGACATTGAGATGCAGTAAAACCAGGCCATGCAAGGACATAGTGCTTGAGGACATCTATCTCAAAAGCTCTCCAAAAGTAGGGCAAATTTTTTCTTCTTGCTCTAATGTTTATGGCTTCTCTTATGGCTATCAAAGCCCTCGTCCTTGCTTGTAA

mRNA sequence

ATGAAAATAGAAGAAGAAGAAGAAGAAATGGGGTTGAAGAAATGTGGTGTTCTTCCGAAAGGAGTTCGAGTTGGCAGACCGAAGGTCTTCAATGTTGTTGGTTATGGAGCTATCCCGGACGGAACAACGGATAACTCTAAGGCATTTTTAGAAGCATGGAAGGATGCGTGTGAATGGAAGGGGAGGGGAAGGGTGTATGTCCCAAAAGGTACATTCAAGTTGAAAAGTGTTCTGTTTTTGGGGCCATGTGAAGGGCAAATGGCCTTTGTGATTAAGGGTATTTTAAAGGCTCCCACCGACATGTCTTTTCTCGCGTCCGACAGTTGGATAAACTTTCGATATGTCGATCAGTTGAGTGTCAGTGGAGGTGGTTCATTGGATGGTGAAGGATCTGTGGCTTGGCCACGAAATGAGTGCAAGAAAAACCCTAATTGCCAATCTCTTCCTACTACGTCATCAGGGGTGCAAATAAGCAACGTGACGTTCAAAAACATATGGGGAAGTAGCAAATCAGCCTCAGCAGTGACATTGAGATGCAGTAAAACCAGGCCATGCAAGGACATAGTGCTTGAGGACATCTATCTCAAAAGCTCTCCAAAAGTAGGGCAAATTTTTTCTTCTTGCTCTAATGTTTATGGCTTCTCTTATGGCTATCAAAGCCCTCGTCCTTGCTTGTAA

Coding sequence (CDS)

ATGAAAATAGAAGAAGAAGAAGAAGAAATGGGGTTGAAGAAATGTGGTGTTCTTCCGAAAGGAGTTCGAGTTGGCAGACCGAAGGTCTTCAATGTTGTTGGTTATGGAGCTATCCCGGACGGAACAACGGATAACTCTAAGGCATTTTTAGAAGCATGGAAGGATGCGTGTGAATGGAAGGGGAGGGGAAGGGTGTATGTCCCAAAAGGTACATTCAAGTTGAAAAGTGTTCTGTTTTTGGGGCCATGTGAAGGGCAAATGGCCTTTGTGATTAAGGGTATTTTAAAGGCTCCCACCGACATGTCTTTTCTCGCGTCCGACAGTTGGATAAACTTTCGATATGTCGATCAGTTGAGTGTCAGTGGAGGTGGTTCATTGGATGGTGAAGGATCTGTGGCTTGGCCACGAAATGAGTGCAAGAAAAACCCTAATTGCCAATCTCTTCCTACTACGTCATCAGGGGTGCAAATAAGCAACGTGACGTTCAAAAACATATGGGGAAGTAGCAAATCAGCCTCAGCAGTGACATTGAGATGCAGTAAAACCAGGCCATGCAAGGACATAGTGCTTGAGGACATCTATCTCAAAAGCTCTCCAAAAGTAGGGCAAATTTTTTCTTCTTGCTCTAATGTTTATGGCTTCTCTTATGGCTATCAAAGCCCTCGTCCTTGCTTGTAA

Protein sequence

MKIEEEEEEMGLKKCGVLPKGVRVGRPKVFNVVGYGAIPDGTTDNSKAFLEAWKDACEWKGRGRVYVPKGTFKLKSVLFLGPCEGQMAFVIKGILKAPTDMSFLASDSWINFRYVDQLSVSGGGSLDGEGSVAWPRNECKKNPNCQSLPTTSSGVQISNVTFKNIWGSSKSASAVTLRCSKTRPCKDIVLEDIYLKSSPKVGQIFSSCSNVYGFSYGYQSPRPCL
Homology
[Close]
BLAST of Cp4.1LG01g00870 vs. Swiss-Prot
Match: PGLR2_PLAAC (Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.6e-27
Identity = 57/119 (47.90%), Postives = 77/119 (64.71%), Query Frame = 1 

Query: 29  VFNVVGYGAIPDGTTDNSKAFLEAWKDACEWKGRGRVYVPKGTFKLKSVLFLGPCEG-QM 88
           VFNV  YGA   G  D S+A ++AWK AC  +G   V +PKG + +  V   GPC+G ++
Sbjct: 9   VFNVNDYGA--KGAGDISQAVMKAWKAACASQGPSTVLIPKGNYNMGEVAMQGPCKGSKI 68

Query: 89  AFVIKGILKAPTDMSFLASDSWINFRYVDQLSVSGGGSLDGEGSVAWPRNECKKNPNCQ 147
            F I G++KAP D S   SD W++F  +D L+VSG G+LDG+G  AW +N C KNPNC+
Sbjct: 69  GFQIDGVVKAPADPSKFKSDGWVSFYRIDGLTVSGTGTLDGQGQTAWAKNNCDKNPNCK 125

[Close]
BLAST of Cp4.1LG01g00870 vs. Swiss-Prot
Match: PGLR_GOSBA (Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-22
Identity = 58/173 (33.53%), Postives = 92/173 (53.18%), Query Frame = 1 

Query: 26  RPKVFNVVG-YGAIPDGTTDNSKAFLEAWKDACEWKGRGRVYVPKGTFKLKSVLFLGPCE 85
           +P  F+VV  +GA  DG TD SK FL+AWK+AC       V +PKGT+ L  V   GPC+
Sbjct: 25  QPDAFDVVAKFGAKADGKTDLSKPFLDAWKEACASVTPSTVVIPKGTYLLSKVNLEGPCK 84

Query: 86  GQMAFVIKGILKAPTDMSFLASDSWINFRYVDQLSVSGGGSLDGEGSVAWPRNECKKNPN 145
             +   ++G ++AP D S     +W+ F  V+   + GGG  DG+GS+A+ +N C+    
Sbjct: 85  APIEINVQGTIQAPADPSAFKDPNWVRFYSVENFKMFGGGIFDGQGSIAYEKNTCENREF 144

Query: 146 CQSLPTTSSGVQISNVTFKNIWGSSKSASAVTLRCSKTRPCKDIVLEDIYLKS 198
              LP       ++N   ++I  +SK +    +       CK+I LE + +++
Sbjct: 145 RSKLPVNIRFDFVTNALIQDI--TSKDSKLFHI---NVFACKNITLERLKIEA 192

[Close]
BLAST of Cp4.1LG01g00870 vs. Swiss-Prot
Match: PGLR_TOBAC (Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.0e-22
Identity = 53/137 (38.69%), Postives = 78/137 (56.93%), Query Frame = 1 

Query: 29  VFNVVGYGAIPDGTTDNSKAFLEAWKDACEWKGRGRVYVPKGTFKLKSVLFLGPCEGQMA 88
           VF++  YGA  +   D S+A L A+K+AC+      + +PKGTF +  V   GPC+  + 
Sbjct: 26  VFDITKYGA--NSNADISEALLNAFKEACQSTSPSTIVIPKGTFTMNQVKLEGPCKSPLE 85

Query: 89  FVIKGILKAPTDMSFLASDSWINFRYVDQLSVSGGGSLDGEGSVAWPRNECKKNPNCQSL 148
             I+  LKAP+D S L    W+    +DQ ++SGGG LDG+ + AW   ECK++  C  L
Sbjct: 86  LQIQATLKAPSDPSQLKVGEWLTVNKLDQFTMSGGGILDGQAAAAW---ECKQSKKCNKL 145

Query: 149 PTTSSGVQISNVTFKNI 166
           P   S   ++N T K+I
Sbjct: 146 PNNLSFNSLTNSTIKDI 157

[Close]
BLAST of Cp4.1LG01g00870 vs. Swiss-Prot
Match: PGLR1_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.8e-22
Identity = 64/195 (32.82%), Postives = 97/195 (49.74%), Query Frame = 1 

Query: 5   EEEEEMGLKKCGVLPKGVRVGRPKVFNVVGYGAIPDGTTDNSKAFLEAWKDACEWKGRGR 64
           E+EE  G+      P G        F++   GA  +G TD++KA  EAW  AC   G+  
Sbjct: 23  EKEESKGIDAKASGPGGS-------FDITKLGASGNGKTDSTKAVQEAWASACGGTGKQT 82

Query: 65  VYVPKGTFKLKSVLFLGPCEGQMAFVIKGILKAPTDMS-FLASDSWINFRYVDQLSVSGG 124
           + +PKG F +  + F GPC+G +   + G L A TD+S +    +WI    VD L ++G 
Sbjct: 83  ILIPKGDFLVGQLNFTGPCKGDVTIQVDGNLLATTDLSQYKDHGNWIEILRVDNLVITGK 142

Query: 125 GSLDGEGSVAWPRNECKKNPNCQSLPTTSSGVQISNVTFKNIWGSSKSASAVTLRCSK-- 184
           G+LDG+G   W +N C K  +C+ LP +     ++N             S VTL  SK  
Sbjct: 143 GNLDGQGPAVWSKNSCTKKYDCKILPNSLVMDFVNN----------GEVSGVTLLNSKFF 200

Query: 185 ---TRPCKDIVLEDI 194
                 CKD++++D+
Sbjct: 203 HMNMYRCKDMLIKDV 200

[Close]
BLAST of Cp4.1LG01g00870 vs. Swiss-Prot
Match: PGLR3_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 9.9e-22
Identity = 57/170 (33.53%), Postives = 88/170 (51.76%), Query Frame = 1 

Query: 30  FNVVGYGAIPDGTTDNSKAFLEAWKDACEWKGRGRVYVPKGTFKLKSVLFLGPCEGQMAF 89
           F++   GA  +G TD++KA  EAW  AC   G+  + +PKG F +  + F GPC+G +  
Sbjct: 41  FDITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGPLNFTGPCKGDVTI 100

Query: 90  VIKGILKAPTDMS-FLASDSWINFRYVDQLSVSGGGSLDGEGSVAWPRNECKKNPNCQSL 149
            + G L A TD+S +    +WI    VD L ++G G LDG+G   W +N C K  +C+ L
Sbjct: 101 QVNGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGKLDGQGPAVWSKNSCVKKYDCKIL 160

Query: 150 PTTSSGVQISNVTFKNIWGSSKSASAVTLRCSK-----TRPCKDIVLEDI 194
           P +     ++N             S +TL  SK        CKD++++D+
Sbjct: 161 PNSLVMDFVNN----------GEVSGITLLNSKFFHMNMYKCKDMLIKDV 200

[Close]
BLAST of Cp4.1LG01g00870 vs. TrEMBL
Match: W9QZE6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024607 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.3e-41
Identity = 79/155 (50.97%), Postives = 110/155 (70.97%), Query Frame = 1 

Query: 26  RPKVFNVVGYGAIPDGTTDNSKAFLEAWKDACEWKGRGRVYVPKGTFKLKSVLFLGPCEG 85
           +PKVFNV+ YGAI +G TDNSKAFL AW++ACEW+G+ RV +P+GT+ L  V F+GPCEG
Sbjct: 33  KPKVFNVMDYGAIANGKTDNSKAFLRAWREACEWEGKARVLIPQGTYMLYPVEFIGPCEG 92

Query: 86  QMAFVIKGILKAPTDMS---FLASDSWINFRYVDQLSVSGGGSLDGEGSVAWPRNECKKN 145
            MAFVI+G LKAP++ +   F +++ WINFR V  L V GGG++DG+G+ +WP N+C  N
Sbjct: 93  HMAFVIRGTLKAPSEAAQAGFYSAEKWINFRNVKGLGVGGGGTVDGQGAASWPLNDCGTN 152

Query: 146 PNCQSLPTTSSGVQISNVTFKNIWGSSKSASAVTL 178
            NCQ+LPTT     +SN    ++      ++  T+
Sbjct: 153 ANCQTLPTTMRFDFVSNARIHHLKSIDSKSTHFTI 187

[Close]
BLAST of Cp4.1LG01g00870 vs. TrEMBL
Match: A0A068V6H9_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00017204001 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.3e-39
Identity = 75/123 (60.98%), Postives = 90/123 (73.17%), Query Frame = 1 

Query: 27  PKVFNVVGYGAIPDGTTDNSKAFLEAWKDACEWKGRGRVYVPKGTFKLKSVLFLGPCEGQ 86
           PK+FNV+ YGA  DG TDNS+AFL AW DAC WKGR RV +P G + L SV FLGPC G+
Sbjct: 28  PKIFNVLNYGARADGNTDNSQAFLRAWIDACRWKGRSRVLIPGGIYLLHSVTFLGPCLGE 87

Query: 87  MAFVIKGILKAPTDMSFLASDSWINFRYVDQLSVSGGGSLDGEGSVAWPRNECKKNPNCQ 146
           M F+IKG L+AP + +   +D+WI FRYVD LSV GGG LDG+G+ AWP N+C KN  C 
Sbjct: 88  MTFMIKGTLRAPNNPALFFTDTWIGFRYVDNLSVKGGGYLDGQGASAWPYNDCFKNSQCL 147

Query: 147 SLP 150
            LP
Sbjct: 148 PLP 150

[Close]
BLAST of Cp4.1LG01g00870 vs. TrEMBL
Match: M1BGK6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400017348 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.6e-39
Identity = 75/150 (50.00%), Postives = 98/150 (65.33%), Query Frame = 1 

Query: 28  KVFNVVGYGAIPDGTTDNSKAFLEAWKDACEWKGRGRVYVPKGTFKLKSVLFLGPCEGQM 87
           K FNV  YGA+ D   DNS+AFL AW D C W GR  +Y+P GT+KL+ V F GPC G M
Sbjct: 30  KYFNVKDYGAVADDKRDNSQAFLRAWYDGCRWGGRSVIYIPYGTYKLREVSFEGPCNGMM 89

Query: 88  AFVIKGILKAPTDMSFLASDSWINFRYVDQLSVSGGGSLDGEGSVAWPRNECKKNPNCQS 147
            FVIKG+LKAPT +S  ++++WI FRY+D+L V GGG LDG+G+ AWP N+C KNP C  
Sbjct: 90  IFVIKGVLKAPTHISLFSTNTWIGFRYIDRLVVKGGGYLDGQGAAAWPYNDCSKNPKCMP 149

Query: 148 LPTTSSGVQISNVTFKNIWGSSKSASAVTL 178
           LP T     ++N    ++   +   S + L
Sbjct: 150 LPVTMRFDFVTNSRIHHLRSINSKNSHINL 179

[Close]
BLAST of Cp4.1LG01g00870 vs. TrEMBL
Match: A0A022QS85_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a023133mg PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.6e-39
Identity = 74/151 (49.01%), Postives = 103/151 (68.21%), Query Frame = 1 

Query: 27  PKVFNVVGYGAIPDGTTDNSKAFLEAWKDACEWKGRGRVYVPKGTFKLKSVLFLGPCEGQ 86
           PK+F+VV YGA+ DG TDN+KAFL+AW +AC + GR RV++P G F L SV F+GPC G 
Sbjct: 8   PKIFDVVKYGAVSDGKTDNTKAFLKAWDEACGYSGRSRVFIPNGIFLLDSVSFVGPCSGP 67

Query: 87  MAFVIKGILKAPTDMSFLASDSWINFRYVDQLSVSGGGSLDGEGSVAWPRNECKKNPNCQ 146
           ++F++KG ++APTD     +D+WI FRYV +L+V GGG  DG+G  AWP N+CK N  C+
Sbjct: 68  ISFLVKGTIRAPTDSRRFFTDTWIGFRYVSRLTVKGGGIFDGQGQAAWPFNDCKTNDQCK 127

Query: 147 SLPTTSSGVQISNVTFKNIWGSSKSASAVTL 178
            LPTT     ++N    N+   +  +S V +
Sbjct: 128 PLPTTLRFDFVNNSRVLNLHSINSKSSHVNI 158

[Close]
BLAST of Cp4.1LG01g00870 vs. TrEMBL
Match: F4IA77_ARATH (Pectin lyase-like superfamily protein OS=Arabidopsis thaliana GN=At1g78400 PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.8e-38
Identity = 76/131 (58.02%), Postives = 96/131 (73.28%), Query Frame = 1 

Query: 19  PKGVRVGRPKVFNVVGYGAIPDGTTDNSKAFLEAWKDACEWKGRGRVYVPKGTFKLKSVL 78
           P    VGR KVF+V  YGA  DG TDN+ AF +AWKDAC+WKG  RVY+P GTF L +V 
Sbjct: 25  PSAALVGR-KVFDVRSYGARGDGKTDNTMAFTKAWKDACQWKGLPRVYIPFGTFYLGAVA 84

Query: 79  FLGPCEGQMAFVIKGILKAPTDMSFLASDSWINFRYVDQLSVSGGGSLDGEGSVAWPRNE 138
           F GPC+ +++F+IKG L AP D + +  DSWI FRYVD L+VSGGG LDG+GS +WP N 
Sbjct: 85  FTGPCKSRISFIIKGTLLAPKDPNAIKQDSWIIFRYVDYLTVSGGGILDGQGSYSWPLNN 144

Query: 139 CKKNPNCQSLP 150
           C++  NC++LP
Sbjct: 145 CRQTHNCRALP 154

[Close]
BLAST of Cp4.1LG01g00870 vs. TAIR10
Match: AT1G78400.1 (AT1G78400.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 167.5 bits (423), Expect = 9.1e-42
Identity = 76/131 (58.02%), Postives = 96/131 (73.28%), Query Frame = 1 

Query: 19  PKGVRVGRPKVFNVVGYGAIPDGTTDNSKAFLEAWKDACEWKGRGRVYVPKGTFKLKSVL 78
           P    VGR KVF+V  YGA  DG TDN+ AF +AWKDAC+WKG  RVY+P GTF L +V 
Sbjct: 25  PSAALVGR-KVFDVRSYGARGDGKTDNTMAFTKAWKDACQWKGLPRVYIPFGTFYLGAVA 84

Query: 79  FLGPCEGQMAFVIKGILKAPTDMSFLASDSWINFRYVDQLSVSGGGSLDGEGSVAWPRNE 138
           F GPC+ +++F+IKG L AP D + +  DSWI FRYVD L+VSGGG LDG+GS +WP N 
Sbjct: 85  FTGPCKSRISFIIKGTLLAPKDPNAIKQDSWIIFRYVDYLTVSGGGILDGQGSYSWPLNN 144

Query: 139 CKKNPNCQSLP 150
           C++  NC++LP
Sbjct: 145 CRQTHNCRALP 154

[Close]
BLAST of Cp4.1LG01g00870 vs. TAIR10
Match: AT2G15450.1 (AT2G15450.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 155.6 bits (392), Expect = 3.6e-38
Identity = 70/141 (49.65%), Postives = 92/141 (65.25%), Query Frame = 1 

Query: 26  RPKVFNVVGYGAIPDGTTDNSKAFLEAWKDACEW-KGRGRVYVPKGTFKLKSVLFLGPCE 85
           RPKVFNV  +GA PDG TDN+ AF   W  AC+   G  ++YVPKGTF L  V F+GPC+
Sbjct: 27  RPKVFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGPCK 86

Query: 86  GQMAFVIKGILKAPTDMSFLASDSWINFRYVDQLSVSGGGSLDGEGSVAWPRNECKKNPN 145
             + F+I G L AP + S +  D+WINFRY++ LS+SG G+LDG+G  +WP N+C  NPN
Sbjct: 87  NPIEFIIDGTLLAPANPSDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPHNDCHTNPN 146

Query: 146 CQSLPTTSSGVQISNVTFKNI 166
           C  L  T     ++N   K+I
Sbjct: 147 CPKLAMTMGFAFVNNSNIKDI 167

[Close]
BLAST of Cp4.1LG01g00870 vs. TAIR10
Match: AT2G15460.1 (AT2G15460.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 155.6 bits (392), Expect = 3.6e-38
Identity = 70/141 (49.65%), Postives = 92/141 (65.25%), Query Frame = 1 

Query: 26  RPKVFNVVGYGAIPDGTTDNSKAFLEAWKDACEW-KGRGRVYVPKGTFKLKSVLFLGPCE 85
           RPKVFNV  +GA PDG TDN+ AF   W  AC+   G  ++YVPKGTF L  V F+GPC+
Sbjct: 27  RPKVFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGPCK 86

Query: 86  GQMAFVIKGILKAPTDMSFLASDSWINFRYVDQLSVSGGGSLDGEGSVAWPRNECKKNPN 145
             + F+I G L AP + S +  D+WINFRY++ LS+SG G+LDG+G  +WP N+C  NPN
Sbjct: 87  NPIEFIIDGTLLAPANPSDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPHNDCHTNPN 146

Query: 146 CQSLPTTSSGVQISNVTFKNI 166
           C  L  T     ++N   K+I
Sbjct: 147 CPKLAMTMGFAFVNNSNIKDI 167

[Close]
BLAST of Cp4.1LG01g00870 vs. TAIR10
Match: AT1G43090.1 (AT1G43090.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 155.2 bits (391), Expect = 4.7e-38
Identity = 71/141 (50.35%), Postives = 91/141 (64.54%), Query Frame = 1 

Query: 26  RPKVFNVVGYGAIPDGTTDNSKAFLEAWKDAC-EWKGRGRVYVPKGTFKLKSVLFLGPCE 85
           RPKVFNV  YG+ PDG TDN+ AF   WK AC    G  ++YVPKGTF L  V F+GPC+
Sbjct: 27  RPKVFNVRRYGSRPDGKTDNANAFTSVWKHACTRISGSSKIYVPKGTFYLGGVEFVGPCK 86

Query: 86  GQMAFVIKGILKAPTDMSFLASDSWINFRYVDQLSVSGGGSLDGEGSVAWPRNECKKNPN 145
             + FVI G L AP +   +  D+WINFRY++ LS+SG G+LDG+G  +WP N+C KN N
Sbjct: 87  NPIEFVIDGTLLAPANPRDIKQDTWINFRYINNLSISGSGTLDGQGKYSWPLNDCHKNTN 146

Query: 146 CQSLPTTSSGVQISNVTFKNI 166
           C  L  T     ++N   K+I
Sbjct: 147 CPKLAMTMGFAFVNNSRIKDI 167

[Close]
BLAST of Cp4.1LG01g00870 vs. TAIR10
Match: AT1G43080.1 (AT1G43080.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 154.8 bits (390), Expect = 6.1e-38
Identity = 71/141 (50.35%), Postives = 91/141 (64.54%), Query Frame = 1 

Query: 26  RPKVFNVVGYGAIPDGTTDNSKAFLEAWKDAC-EWKGRGRVYVPKGTFKLKSVLFLGPCE 85
           RPKVFNV  YG+ PDG TDN+ AF   WK AC    G  ++YVPKGTF L  V F+GPC+
Sbjct: 27  RPKVFNVRRYGSRPDGKTDNANAFTSVWKRACTRISGSSKIYVPKGTFYLGGVEFVGPCK 86

Query: 86  GQMAFVIKGILKAPTDMSFLASDSWINFRYVDQLSVSGGGSLDGEGSVAWPRNECKKNPN 145
             + FVI G L AP +   +  D+WINFRY++ LS+SG G+LDG+G  +WP N+C KN N
Sbjct: 87  NPIEFVIDGTLLAPANPRDIKQDTWINFRYINNLSISGSGTLDGQGKYSWPLNDCHKNTN 146

Query: 146 CQSLPTTSSGVQISNVTFKNI 166
           C  L  T     ++N   K+I
Sbjct: 147 CPKLAMTMGFAFVNNSRIKDI 167

[Close]
BLAST of Cp4.1LG01g00870 vs. NCBI nr
Match: gi|659102458|ref|XP_008452143.1| (PREDICTED: exopolygalacturonase [Cucumis melo])

HSP 1 Score: 238.8 bits (608), Expect = 9.2e-60
Identity = 120/189 (63.49%), Postives = 136/189 (71.96%), Query Frame = 1 

Query: 10  MGLKKC--------GVLPKGVR--------VGRPKVFNVVGYGAIPDGTTDNSKAFLEAW 69
           MGLKKC        G+L   ++         G+PK FNVV YGAIPDG TDNSKAFL+AW
Sbjct: 1   MGLKKCYVFEIFLIGLLLFSIQELEAHNYAAGKPKFFNVVNYGAIPDGMTDNSKAFLKAW 60

Query: 70  KDACEWKGRGRVYVPKGTFKLKSVLFLGPCEGQMAFVIKGILKAPTDMSFLASDSWINFR 129
            DACEWKGRGRVYVPKGTFKL  VLFLGPCEG  AF+IKGILKA TDMS L  DSWINFR
Sbjct: 61  NDACEWKGRGRVYVPKGTFKLGEVLFLGPCEGHTAFIIKGILKASTDMSSLYGDSWINFR 120

Query: 130 YVDQLSVSGGGSLDGEGSVAWPRNECKKNPNCQSLPTTSSGVQISNVTFKNIWG-SSKSA 182
           YVD+L+V GGGSLDG+G++AWPRN+CK NPNCQSLPTT     I+N    N+    SK++
Sbjct: 121 YVDRLTVGGGGSLDGQGAIAWPRNDCKNNPNCQSLPTTMKLDFITNSKVHNLRSIDSKNS 180

[Close]
BLAST of Cp4.1LG01g00870 vs. NCBI nr
Match: gi|778697538|ref|XP_011654343.1| (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 229.9 bits (585), Expect = 4.3e-57
Identity = 117/187 (62.57%), Postives = 130/187 (69.52%), Query Frame = 1 

Query: 10  MGLKKCGV---------------LPKGVRVGRPKVFNVVGYGAIPDGTTDNSKAFLEAWK 69
           MGLKKC V               L      G PK FNVV YGAIPDG TDNSKAFL+AW 
Sbjct: 1   MGLKKCYVFVVFFIAFFLFSIQELEAYNYAGIPKFFNVVKYGAIPDGKTDNSKAFLKAWN 60

Query: 70  DACEWKGRGRVYVPKGTFKLKSVLFLGPCEGQMAFVIKGILKAPTDMSFLASDSWINFRY 129
           DACEWKGRGRVYVPKGTFKL  VLFLGPCEG  AFV+KGILKA TDMS L  DSWINFRY
Sbjct: 61  DACEWKGRGRVYVPKGTFKLGEVLFLGPCEGHTAFVVKGILKASTDMSSLYGDSWINFRY 120

Query: 130 VDQLSVSGGGSLDGEGSVAWPRNECKKNPNCQSLPTTSSGVQISNVTFKNIWG-SSKSAS 181
           VD L+V GGGSLDG+G++AWPRN+C+ NPNC+SLPTT     I+N    N+    SK+  
Sbjct: 121 VDSLTVGGGGSLDGQGAIAWPRNDCRNNPNCRSLPTTMKFDFITNSKVHNLRSIDSKNNH 180

[Close]
BLAST of Cp4.1LG01g00870 vs. NCBI nr
Match: gi|645239836|ref|XP_008226319.1| (PREDICTED: exopolygalacturonase [Prunus mume])

HSP 1 Score: 184.1 bits (466), Expect = 2.7e-43
Identity = 85/155 (54.84%), Postives = 110/155 (70.97%), Query Frame = 1 

Query: 26  RPKVFNVVGYGAIPDGTTDNSKAFLEAWKDACEWKGRGRVYVPKGTFKLKSVLFLGPCEG 85
           +PK FNV+ YGA+  G TDNSKAFL+AW DAC+W G+ RV VP+GTFKL  V+F GPC G
Sbjct: 22  QPKFFNVMDYGAVGGGRTDNSKAFLKAWSDACQWNGKSRVVVPQGTFKLYPVIFSGPCNG 81

Query: 86  QMAFVIKGILKAPTDMSFLASDSWINFRYVDQLSVSGGGSLDGEGSVAWPRNECKKNPNC 145
            +AFVI+G LKA TD S  ++ SWINFRYVD+L+VSGGG+LDG+G+ AW  N C+ NP C
Sbjct: 82  PIAFVIRGTLKATTDPSSFSAHSWINFRYVDELTVSGGGTLDGQGASAWHLNNCRSNPQC 141

Query: 146 QSLPTTSSGVQISNVTFKNIWG-SSKSASAVTLRC 180
           Q+LP + S   ++N   + +    SK+A      C
Sbjct: 142 QALPISMSFDFVTNAIVQRVKSYDSKNAHFKVFGC 176

[Close]
BLAST of Cp4.1LG01g00870 vs. NCBI nr
Match: gi|694328285|ref|XP_009354960.1| (PREDICTED: exopolygalacturonase-like [Pyrus x bretschneideri])

HSP 1 Score: 180.6 bits (457), Expect = 3.0e-42
Identity = 82/138 (59.42%), Postives = 102/138 (73.91%), Query Frame = 1 

Query: 28  KVFNVVGYGAIPDGTTDNSKAFLEAWKDACEWKGRGRVYVPKGTFKLKSVLFLGPCEGQM 87
           K FNV  YGA+  G  DNSKAFLEAWK+AC+WKGR RV VP+GTFKL  V+F GPC G +
Sbjct: 17  KYFNVRNYGAVEGGEADNSKAFLEAWKEACQWKGRARVVVPRGTFKLYPVIFSGPCNGPI 76

Query: 88  AFVIKGILKAPTDMSFLASDSWINFRYVDQLSVSGGGSLDGEGSVAWPRNECKKNPNCQS 147
           AF+I+G L+A  D S  ++DSWINFRY+DQL V+GGG+LDG+G+ AW  N CK NP CQ+
Sbjct: 77  AFLIEGTLRASIDPSTFSTDSWINFRYIDQLVVTGGGTLDGQGASAWHLNNCKTNPQCQA 136

Query: 148 LPTTSSGVQISNVTFKNI 166
           LP + S   I+N   + I
Sbjct: 137 LPISLSFDFITNARVEYI 154

[Close]
BLAST of Cp4.1LG01g00870 vs. NCBI nr
Match: gi|657982149|ref|XP_008383110.1| (PREDICTED: exopolygalacturonase-like [Malus domestica])

HSP 1 Score: 179.1 bits (453), Expect = 8.6e-42
Identity = 80/138 (57.97%), Postives = 104/138 (75.36%), Query Frame = 1 

Query: 28  KVFNVVGYGAIPDGTTDNSKAFLEAWKDACEWKGRGRVYVPKGTFKLKSVLFLGPCEGQM 87
           K F+V  YGA+ DG TDNS+AFL+AWK+AC+WKG  RV VP+GTFKL  V+F GPC G +
Sbjct: 31  KYFDVRKYGAVDDGKTDNSQAFLDAWKEACQWKGTARVLVPRGTFKLYPVIFSGPCNGPI 90

Query: 88  AFVIKGILKAPTDMSFLASDSWINFRYVDQLSVSGGGSLDGEGSVAWPRNECKKNPNCQS 147
           AF+IKG L+A T+ S  ++ SWINFRY+DQL+V+GGG+LDG+G+ AW  N CK NP CQ+
Sbjct: 91  AFLIKGTLRATTNPSTFSAHSWINFRYIDQLTVTGGGTLDGQGASAWHLNNCKTNPQCQA 150

Query: 148 LPTTSSGVQISNVTFKNI 166
           LP + S   I+N   + I
Sbjct: 151 LPVSMSFDFITNARIEYI 168

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g00870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PGLR2_PLAAC4.6e-2747.90Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1[more]
PGLR_GOSBA1.5e-2233.53Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1[more]
PGLR_TOBAC2.0e-2238.69Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1[more]
PGLR1_MAIZE5.8e-2232.82Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1[more]
PGLR3_MAIZE9.9e-2233.53Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1[more]
BLAST of Cp4.1LG01g00870 vs. TrEMBL
Match NameE-valueIdentityDescription
W9QZE6_9ROSA2.3e-4150.97Uncharacterized protein OS=Morus notabilis GN=L484_024607 PE=3 SV=1[more]
A0A068V6H9_COFCA1.3e-3960.98Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00017204001 PE=3 SV=1[more]
M1BGK6_SOLTU1.6e-3950.00Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400017348 PE=3 SV=1[more]
A0A022QS85_ERYGU3.6e-3949.01Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a023133mg... [more]
F4IA77_ARATH1.8e-3858.02Pectin lyase-like superfamily protein OS=Arabidopsis thaliana GN=At1g78400 PE=3 ... [more]
BLAST of Cp4.1LG01g00870 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G78400.19.1e-4258.02 Pectin lyase-like superfamily protein[more]
AT2G15450.13.6e-3849.65 Pectin lyase-like superfamily protein[more]
AT2G15460.13.6e-3849.65 Pectin lyase-like superfamily protein[more]
AT1G43090.14.7e-3850.35 Pectin lyase-like superfamily protein[more]
AT1G43080.16.1e-3850.35 Pectin lyase-like superfamily protein[more]
BLAST of Cp4.1LG01g00870 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659102458|ref|XP_008452143.1|9.2e-6063.49PREDICTED: exopolygalacturonase [Cucumis melo][more]
gi|778697538|ref|XP_011654343.1|4.3e-5762.57PREDICTED: exopolygalacturonase-like [Cucumis sativus][more]
gi|645239836|ref|XP_008226319.1|2.7e-4354.84PREDICTED: exopolygalacturonase [Prunus mume][more]
gi|694328285|ref|XP_009354960.1|3.0e-4259.42PREDICTED: exopolygalacturonase-like [Pyrus x bretschneideri][more]
gi|657982149|ref|XP_008383110.1|8.6e-4257.97PREDICTED: exopolygalacturonase-like [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold
IPR011050Pectin_lyase_fold/virulence
IPR000743Glyco_hydro_28
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0071555 cell wall organization
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005576 extracellular region
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g00870.1Cp4.1LG01g00870.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 60..150
score: 9.2E-12coord: 152..211
score: 2.8
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 149..225
score: 2.73E-17coord: 23..149
score: 6.49
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 146..224
score: 6.6E-20coord: 26..145
score: 1.0
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 26..165
score: 1.6
NoneNo IPR availablePANTHERPTHR31375:SF10GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN-RELATEDcoord: 26..165
score: 1.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g00870CmaCh04G006460Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g00870CmoCh04G006940Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g00870Cla005402Watermelon (97103) v1cpewmB419
Cp4.1LG01g00870MELO3C016158Melon (DHL92) v3.5.1cpemeB423
Cp4.1LG01g00870ClCG07G010520Watermelon (Charleston Gray)cpewcgB411
Cp4.1LG01g00870Lsi07G008500Bottle gourd (USVL1VR-Ls)cpelsiB372
Cp4.1LG01g00870MELO3C016158.2Melon (DHL92) v3.6.1cpemedB495
Cp4.1LG01g00870Bhi01G002431Wax gourdcpewgoB0509
Cp4.1LG01g00870Carg13104Silver-seed gourdcarcpeB0061
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g00870Cucurbita pepo (Zucchini)cpecpeB236
Cp4.1LG01g00870Cucumber (Gy14) v1cgycpeB0718
Cp4.1LG01g00870Cucurbita maxima (Rimu)cmacpeB353
Cp4.1LG01g00870Cucurbita moschata (Rifu)cmocpeB315
Cp4.1LG01g00870Wild cucumber (PI 183967)cpecpiB396
Cp4.1LG01g00870Cucumber (Chinese Long) v2cpecuB399
Cp4.1LG01g00870Bottle gourd (USVL1VR-Ls)cpelsiB381
Cp4.1LG01g00870Cucumber (Gy14) v2cgybcpeB501
Cp4.1LG01g00870Melon (DHL92) v3.6.1cpemedB491
Cp4.1LG01g00870Silver-seed gourdcarcpeB0929
Cp4.1LG01g00870Cucumber (Chinese Long) v3cpecucB0496