Cp4.1LG01g00850 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g00850
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Descriptionralf-like 9
LocationCp4.1LG01 : 3316137 .. 3316487 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCGGGATTACCAATGTAAATGCAAATGTCATCGACTATGATGCTATAAAAGCTGATGTTAGCCCCGGATGTAGCCCTAAACATCCCAATCTTTGTAAGACGCATGAAGCCAACCCATATGAAAGAGGGTGTAATGCAATCAATCAATGTAGAGGAGGCGAACCCGTTGTCATAAATGCTATTGAAAAAATTGATATGAAACACAACGATATCATAGAAAGTGAAAGAAGTGAAAGCAAGGCAGGAACCGATGAGGGTGTTGGTAAATTTAAAGGTATGGTTAAGGATAATACTCGCAAAATTAACCCTGGTGCGTTAGAAAATATTTCTGATGGAATTGTTGGATGA

mRNA sequence

ATGGTCGGGATTACCAATGTAAATGCAAATGTCATCGACTATGATGCTATAAAAGCTGATGTTAGCCCCGGATGTAGCCCTAAACATCCCAATCTTTGTAAGACGCATGAAGCCAACCCATATGAAAGAGGGTGTAATGCAATCAATCAATGTAGAGGAGGCGAACCCGTTGTCATAAATGCTATTGAAAAAATTGATATGAAACACAACGATATCATAGAAAGTGAAAGAAGTGAAAGCAAGGCAGGAACCGATGAGGGTGTTGGTAAATTTAAAGGTATGGTTAAGGATAATACTCGCAAAATTAACCCTGGTGCGTTAGAAAATATTTCTGATGGAATTGTTGGATGA

Coding sequence (CDS)

ATGGTCGGGATTACCAATGTAAATGCAAATGTCATCGACTATGATGCTATAAAAGCTGATGTTAGCCCCGGATGTAGCCCTAAACATCCCAATCTTTGTAAGACGCATGAAGCCAACCCATATGAAAGAGGGTGTAATGCAATCAATCAATGTAGAGGAGGCGAACCCGTTGTCATAAATGCTATTGAAAAAATTGATATGAAACACAACGATATCATAGAAAGTGAAAGAAGTGAAAGCAAGGCAGGAACCGATGAGGGTGTTGGTAAATTTAAAGGTATGGTTAAGGATAATACTCGCAAAATTAACCCTGGTGCGTTAGAAAATATTTCTGATGGAATTGTTGGATGA

Protein sequence

MVGITNVNANVIDYDAIKADVSPGCSPKHPNLCKTHEANPYERGCNAINQCRGGEPVVINAIEKIDMKHNDIIESERSESKAGTDEGVGKFKGMVKDNTRKINPGALENISDGIVG
Homology
[Close]
BLAST of Cp4.1LG01g00850 vs. Swiss-Prot
Match: RLF9_ARATH (Protein RALF-like 9 OS=Arabidopsis thaliana GN=RALFL9 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.7e-07
Identity = 25/44 (56.82%), Postives = 29/44 (65.91%), Query Frame = 1 

Query: 12 IDYDAI-KADVSPGCSPKHPNLCKTHEANPYERGCNAINQCRGG 55
          I Y AI + D +  C   HPN CK  EANPY+RGC  IN+CRGG
Sbjct: 32 ITYPAIDRGDHAVHCDKAHPNTCKKKEANPYQRGCEKINRCRGG 75

[Close]
BLAST of Cp4.1LG01g00850 vs. TrEMBL
Match: A0A0A0L8B1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426350 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.0e-10
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 1 

Query: 1  MVGITNVNANVIDYDAIKA-DVSPGCSPKHPNLCKTHEANPYERGCNAINQCRGGEPVVI 60
          M+ ITN     IDY +I A DVSPGCSP HP LC+   ANPY+RGCN I++CR G  ++ 
Sbjct: 21 MIMITNAR-KFIDYGSIVAGDVSPGCSPTHPELCRVKSANPYQRGCNRIDRCREGNDIID 80

Query: 61 NAIEKID 67
             E I+
Sbjct: 81 AEEEHIE 86

[Close]
BLAST of Cp4.1LG01g00850 vs. TrEMBL
Match: A0A067F0E4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041712mg PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.1e-06
Identity = 28/53 (52.83%), Postives = 29/53 (54.72%), Query Frame = 1 

Query: 1  MVGITNVNANVIDYDAIKADVSPGCSPKHPNLCKTHEANPYERGCNAINQCRG 54
          MV      A  I Y AI A  +PGCSP HP LCK    NPY RGC    QCRG
Sbjct: 22 MVVKDGAEAKEIGYGAIGAGGNPGCSPVHPELCKMEPGNPYHRGCENEAQCRG 74

[Close]
BLAST of Cp4.1LG01g00850 vs. TrEMBL
Match: V4UF46_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018043mg PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.1e-06
Identity = 28/53 (52.83%), Postives = 29/53 (54.72%), Query Frame = 1 

Query: 1  MVGITNVNANVIDYDAIKADVSPGCSPKHPNLCKTHEANPYERGCNAINQCRG 54
          MV      A  I Y AI A  +PGCSP HP LCK    NPY RGC    QCRG
Sbjct: 22 MVVKDGAEAKEIGYGAIGAGGNPGCSPVHPELCKMEPGNPYHRGCENEAQCRG 74

[Close]
BLAST of Cp4.1LG01g00850 vs. TAIR10
Match: AT1G61566.1 (AT1G61566.1 ralf-like 9)

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-08
Identity = 25/44 (56.82%), Postives = 29/44 (65.91%), Query Frame = 1 

Query: 12 IDYDAI-KADVSPGCSPKHPNLCKTHEANPYERGCNAINQCRGG 55
          I Y AI + D +  C   HPN CK  EANPY+RGC  IN+CRGG
Sbjct: 32 ITYPAIDRGDHAVHCDKAHPNTCKKKEANPYQRGCEKINRCRGG 75

[Close]
BLAST of Cp4.1LG01g00850 vs. TAIR10
Match: AT2G32885.1 (AT2G32885.1 Rapid alkalinization factor (RALF) family protein)

HSP 1 Score: 48.1 bits (113), Expect = 4.2e-06
Identity = 21/51 (41.18%), Postives = 29/51 (56.86%), Query Frame = 1 

Query: 4  ITNVNANVIDYDAIKADVSPGCSPKHPNLCKTHEANPYERGCNAINQCRGG 55
          ++   AN I   A++ D+  GC+P     CK   ANPY+ GC A  +CRGG
Sbjct: 22 MSTTEANSIGAPAMREDLPKGCAPGSSAGCKMQPANPYKPGCEASQRCRGG 72

[Close]
BLAST of Cp4.1LG01g00850 vs. NCBI nr
Match: gi|700202865|gb|KGN57998.1| (hypothetical protein Csa_3G426350 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 1.0e-09
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 1 

Query: 1  MVGITNVNANVIDYDAIKA-DVSPGCSPKHPNLCKTHEANPYERGCNAINQCRGGEPVVI 60
          M+ ITN     IDY +I A DVSPGCSP HP LC+   ANPY+RGCN I++CR G  ++ 
Sbjct: 21 MIMITNAR-KFIDYGSIVAGDVSPGCSPTHPELCRVKSANPYQRGCNRIDRCREGNDIID 80

Query: 61 NAIEKID 67
             E I+
Sbjct: 81 AEEEHIE 86

[Close]
BLAST of Cp4.1LG01g00850 vs. NCBI nr
Match: gi|567910725|ref|XP_006447676.1| (hypothetical protein CICLE_v10018043mg [Citrus clementina])

HSP 1 Score: 58.5 bits (140), Expect = 8.7e-06
Identity = 28/53 (52.83%), Postives = 29/53 (54.72%), Query Frame = 1 

Query: 1  MVGITNVNANVIDYDAIKADVSPGCSPKHPNLCKTHEANPYERGCNAINQCRG 54
          MV      A  I Y AI A  +PGCSP HP LCK    NPY RGC    QCRG
Sbjct: 22 MVVKDGAEAKEIGYGAIGAGGNPGCSPVHPELCKMEPGNPYHRGCENEAQCRG 74

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g00850 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RLF9_ARATH2.7e-0756.82Protein RALF-like 9 OS=Arabidopsis thaliana GN=RALFL9 PE=3 SV=1[more]
BLAST of Cp4.1LG01g00850 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8B1_CUCSA7.0e-1052.24Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426350 PE=4 SV=1[more]
A0A067F0E4_CITSI6.1e-0652.83Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041712mg PE=4 SV=1[more]
V4UF46_9ROSI6.1e-0652.83Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018043mg PE=4 SV=1[more]
BLAST of Cp4.1LG01g00850 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G61566.11.5e-0856.82 ralf-like 9[more]
AT2G32885.14.2e-0641.18 Rapid alkalinization factor (RALF) family protein[more]
BLAST of Cp4.1LG01g00850 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202865|gb|KGN57998.1|1.0e-0952.24hypothetical protein Csa_3G426350 [Cucumis sativus][more]
gi|567910725|ref|XP_006447676.1|8.7e-0652.83hypothetical protein CICLE_v10018043mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008801RALF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g00850.1Cp4.1LG01g00850.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008801Rapid ALkalinization FactorPFAMPF05498RALFcoord: 11..53
score: 4.
NoneNo IPR availablePANTHERPTHR34270FAMILY NOT NAMEDcoord: 1..64
score: 1.9
NoneNo IPR availablePANTHERPTHR34270:SF1PROTEIN RALF-LIKE 10-RELATEDcoord: 1..64
score: 1.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g00850Silver-seed gourdcarcpeB0061
Cp4.1LG01g00850Silver-seed gourdcarcpeB0929
Cp4.1LG01g00850Cucumber (Chinese Long) v3cpecucB0496
Cp4.1LG01g00850Wax gourdcpewgoB0509
Cp4.1LG01g00850Cucurbita pepo (Zucchini)cpecpeB236
Cp4.1LG01g00850Cucumber (Gy14) v1cgycpeB0494
Cp4.1LG01g00850Cucurbita maxima (Rimu)cmacpeB353
Cp4.1LG01g00850Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g00850Cucurbita moschata (Rifu)cmocpeB315
Cp4.1LG01g00850Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g00850Wild cucumber (PI 183967)cpecpiB396
Cp4.1LG01g00850Cucumber (Chinese Long) v2cpecuB399
Cp4.1LG01g00850Bottle gourd (USVL1VR-Ls)cpelsiB372
Cp4.1LG01g00850Watermelon (Charleston Gray)cpewcgB411
Cp4.1LG01g00850Watermelon (97103) v1cpewmB419
Cp4.1LG01g00850Melon (DHL92) v3.5.1cpemeB423
Cp4.1LG01g00850Cucumber (Gy14) v2cgybcpeB501
Cp4.1LG01g00850Melon (DHL92) v3.6.1cpemedB491
Cp4.1LG01g00850Melon (DHL92) v3.6.1cpemedB495