Cp4.1LG01g00420 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g00420
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Dehydration responsive element binding transcription factor
Location	Cp4.1LG01 : 3611436 .. 3611738 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAGGGAAAGGGCTAAAAAGAGAAGCAAGAAATTGGATCCCCAAAACATCCCCGTTTCTGAGTCGTCTTCGCCGTCGCCGATGGCAGCGACGTGGTGTTCGAGCGGTGAAACGGGGTGTTCGTCGGCGGTTTCTGAAGATGGGTTTTGGAGAACGGACAATTCGCTGCCATCGTCGTCGTCTTCCGTCTCGGCGGCGGCGGTGGCGATGGTGGGGGAAGGGGACTGTGAAGGGTACTCTTCTCTGGCGAAGATGCCGTCTTTTGATCCAGATTTAATTTGGGAAGTTCTTGCAAATTAA

mRNA sequence

ATGAAGAGGGAAAGGGCTAAAAAGAGAAGCAAGAAATTGGATCCCCAAAACATCCCCGTTTCTGAGTCGTCTTCGCCGTCGCCGATGGCAGCGACGTGGTGTTCGAGCGGTGAAACGGGGTGTTCGTCGGCGGTTTCTGAAGATGGGTTTTGGAGAACGGACAATTCGCTGCCATCGTCGTCGTCTTCCGTCTCGGCGGCGGCGGTGGCGATGGTGGGGGAAGGGGACTGTGAAGGGTACTCTTCTCTGGCGAAGATGCCGTCTTTTGATCCAGATTTAATTTGGGAAGTTCTTGCAAATTAA

Coding sequence (CDS)

ATGAAGAGGGAAAGGGCTAAAAAGAGAAGCAAGAAATTGGATCCCCAAAACATCCCCGTTTCTGAGTCGTCTTCGCCGTCGCCGATGGCAGCGACGTGGTGTTCGAGCGGTGAAACGGGGTGTTCGTCGGCGGTTTCTGAAGATGGGTTTTGGAGAACGGACAATTCGCTGCCATCGTCGTCGTCTTCCGTCTCGGCGGCGGCGGTGGCGATGGTGGGGGAAGGGGACTGTGAAGGGTACTCTTCTCTGGCGAAGATGCCGTCTTTTGATCCAGATTTAATTTGGGAAGTTCTTGCAAATTAA

Protein sequence

MKRERAKKRSKKLDPQNIPVSESSSPSPMAATWCSSGETGCSSAVSEDGFWRTDNSLPSSSSSVSAAAVAMVGEGDCEGYSSLAKMPSFDPDLIWEVLAN

Homology

[Close]

BLAST of Cp4.1LG01g00420 vs. TrEMBL
Match: A0A0A0KV16_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G051500 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.2e-28
Identity = 75/110 (68.18%), Postives = 83/110 (75.45%), Query Frame = 1


Query: 1   MKRERAKKRSKKLDPQNIPVSES---SSPSPMAATWCSSGETGCSSAVSEDGFWRTDNSL 60
           MK+E+AKK SKK DP+N  VSES   SS SP    WC SGE GCSS VSEDGFWR++NS 
Sbjct: 74  MKKEKAKKNSKKSDPKNGAVSESCSMSSSSPAVEEWCRSGEMGCSSVVSEDGFWRSENSP 133

Query: 61  PSSSSS-------VSAAAVAMVGEGDCEGYSSLAKMPSFDPDLIWEVLAN 101
           P+SSSS        + AA A+VGEG CEGYSSLAKMPSFDPDLIWEVLAN
Sbjct: 134 PASSSSSGSAESSAAVAAEAVVGEGVCEGYSSLAKMPSFDPDLIWEVLAN 183

[Close]

BLAST of Cp4.1LG01g00420 vs. TrEMBL
Match: W6FTE9_9ROSA (Dehydration responsive element binding transcription factor OS=Morus notabilis GN=DREB6C PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-07
Identity = 51/112 (45.54%), Postives = 66/112 (58.93%), Query Frame = 1


Query: 1   MKRERAKKRSKKLDP------------QNIPVSESSSPSPMAATWCSSGETGCSSAVSED 60
           +KR +AKK +KK +             +N+ V+ SS+ S  A +    G    S  VSED
Sbjct: 213 VKRNKAKKNAKKSEAVGDGKGSGGCKAENV-VNSSSTSSSSAFSPLVLGPEMVSPTVSED 272

Query: 61  GFWRTDNSLPSSSSSVSAAAVAMVGEGDCEGYSSLAKMPSFDPDLIWEVLAN 101
           GFWR++NS  S S+    AAVA   +   EG SSLA++PSFDPDLIWEVLAN
Sbjct: 273 GFWRSENSPCSVSNECPMAAVAE--DSGFEG-SSLARIPSFDPDLIWEVLAN 320

[Close]

BLAST of Cp4.1LG01g00420 vs. TrEMBL
Match: A0A059C2I9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00857 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-06
Identity = 52/122 (42.62%), Postives = 64/122 (52.46%), Query Frame = 1


Query: 1   MKRERAKKRSK------------KLDPQNIPVSESSS-------PSPM---AATWCSSGE 60
           +KRERAKK +K            K + + +   +SS        PSP+      W S   
Sbjct: 208 VKRERAKKSAKNSSGSSNGGVGGKSESEKVTKVDSSCSSSTLSPPSPLFLGEEDWTSEL- 267

Query: 61  TGCSSAVSEDGFWRTDNSLPSSSSSVSAAAVAMVGEGDCEGYSSLAKMPSFDPDLIWEVL 101
              +S VSEDGFW+ +NS PS S   SA       E + EG  SLAKMPSFDP+LIWEVL
Sbjct: 268 --MASDVSEDGFWKCENSQPSCSVDGSAVVAE---ESESEG-CSLAKMPSFDPELIWEVL 322

[Close]

BLAST of Cp4.1LG01g00420 vs. TrEMBL
Match: B9GXH6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s13910g PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.9e-06
Identity = 52/122 (42.62%), Postives = 71/122 (58.20%), Query Frame = 1


Query: 1   MKRERAKKRSKK---LDPQNI----PV---SESSSPSPMAATWCSS--------GETGCS 60
           +K+ERAKK + K   +D ++     PV   S +S+PSP +++  S+        G    S
Sbjct: 197 VKKERAKKNAAKKSNVDGKSTGSKKPVKVDSNASTPSPASSSSFSTLFSGDNWGGSELVS 256

Query: 61  SAVSEDGFWRTDNSLPSSSSSVSAAAVAMVGEG----DCEGYSSLAKMPSFDPDLIWEVL 101
            AVSEDGFW+ ++S   SS SVS     MV +     DC    SLA+MPS+DP+LIWEVL
Sbjct: 257 PAVSEDGFWKCESS---SSPSVSTDCPVMVPQAMEFEDC----SLARMPSYDPELIWEVL 311

[Close]

BLAST of Cp4.1LG01g00420 vs. TAIR10
Match: AT1G64380.1 (AT1G64380.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 47.8 bits (112), Expect = 4.7e-06
Identity = 44/112 (39.29%), Postives = 61/112 (54.46%), Query Frame = 1


Query: 1   MKRERAKKRSKKLDPQNIPVSESSSPSPMAATWCSSGETGCSSAVSEDGFW-------RT 60
           +++ERAKK S K+   +   ++SS  S       S   T  ++  SED +W        +
Sbjct: 227 VRKERAKK-SVKVSKNSSATADSSCLSSPEILSSSPVTTTTTAVTSEDSYWVSPMGLCNS 286

Query: 61  DNSLPSSSSSVS-----AAAVAMVGEGDCEGYSSLAKMPSFDPDLIWEVLAN 101
           +NS P S S  S     A   AM+G  D +G+  LA+MPSFDP+LIWEVLAN
Sbjct: 287 ENSSPVSVSVPSEVPATAEEEAMMGV-DTDGFL-LARMPSFDPELIWEVLAN 335

[Close]

BLAST of Cp4.1LG01g00420 vs. NCBI nr
Match: gi|700198240|gb|KGN53398.1| (hypothetical protein Csa_4G051500 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 3.1e-28
Identity = 75/110 (68.18%), Postives = 83/110 (75.45%), Query Frame = 1


Query: 1   MKRERAKKRSKKLDPQNIPVSES---SSPSPMAATWCSSGETGCSSAVSEDGFWRTDNSL 60
           MK+E+AKK SKK DP+N  VSES   SS SP    WC SGE GCSS VSEDGFWR++NS 
Sbjct: 74  MKKEKAKKNSKKSDPKNGAVSESCSMSSSSPAVEEWCRSGEMGCSSVVSEDGFWRSENSP 133

Query: 61  PSSSSS-------VSAAAVAMVGEGDCEGYSSLAKMPSFDPDLIWEVLAN 101
           P+SSSS        + AA A+VGEG CEGYSSLAKMPSFDPDLIWEVLAN
Sbjct: 134 PASSSSSGSAESSAAVAAEAVVGEGVCEGYSSLAKMPSFDPDLIWEVLAN 183

[Close]

BLAST of Cp4.1LG01g00420 vs. NCBI nr
Match: gi|449464092|ref|XP_004149763.1| (PREDICTED: ethylene-responsive transcription factor ERF061-like [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 3.1e-28
Identity = 75/110 (68.18%), Postives = 83/110 (75.45%), Query Frame = 1


Query: 1   MKRERAKKRSKKLDPQNIPVSES---SSPSPMAATWCSSGETGCSSAVSEDGFWRTDNSL 60
           MK+E+AKK SKK DP+N  VSES   SS SP    WC SGE GCSS VSEDGFWR++NS 
Sbjct: 202 MKKEKAKKNSKKSDPKNGAVSESCSMSSSSPAVEEWCRSGEMGCSSVVSEDGFWRSENSP 261

Query: 61  PSSSSS-------VSAAAVAMVGEGDCEGYSSLAKMPSFDPDLIWEVLAN 101
           P+SSSS        + AA A+VGEG CEGYSSLAKMPSFDPDLIWEVLAN
Sbjct: 262 PASSSSSGSAESSAAVAAEAVVGEGVCEGYSSLAKMPSFDPDLIWEVLAN 311

[Close]

BLAST of Cp4.1LG01g00420 vs. NCBI nr
Match: gi|703100076|ref|XP_010096822.1| (Ethylene-responsive transcription factor [Morus notabilis])

HSP 1 Score: 63.9 bits (154), Expect = 1.8e-07
Identity = 51/112 (45.54%), Postives = 66/112 (58.93%), Query Frame = 1


Query: 1   MKRERAKKRSKKLDP------------QNIPVSESSSPSPMAATWCSSGETGCSSAVSED 60
           +KR +AKK +KK +             +N+ V+ SS+ S  A +    G    S  VSED
Sbjct: 213 VKRNKAKKNAKKSEAVGDGKGSGGCKAENV-VNSSSTSSSSAFSPLVLGPEMVSPTVSED 272

Query: 61  GFWRTDNSLPSSSSSVSAAAVAMVGEGDCEGYSSLAKMPSFDPDLIWEVLAN 101
           GFWR++NS  S S+    AAVA   +   EG SSLA++PSFDPDLIWEVLAN
Sbjct: 273 GFWRSENSPCSVSNECPMAAVAE--DSGFEG-SSLARIPSFDPDLIWEVLAN 320

[Close]

BLAST of Cp4.1LG01g00420 vs. NCBI nr
Match: gi|702338308|ref|XP_010055858.1| (PREDICTED: ethylene-responsive transcription factor ERF061-like [Eucalyptus grandis])

HSP 1 Score: 59.7 bits (143), Expect = 3.4e-06
Identity = 52/122 (42.62%), Postives = 64/122 (52.46%), Query Frame = 1


Query: 1   MKRERAKKRSK------------KLDPQNIPVSESSS-------PSPM---AATWCSSGE 60
           +KRERAKK +K            K + + +   +SS        PSP+      W S   
Sbjct: 208 VKRERAKKSAKNSSGSSNGGVGGKSESEKVTKVDSSCSSSTLSPPSPLFLGEEDWTSEL- 267

Query: 61  TGCSSAVSEDGFWRTDNSLPSSSSSVSAAAVAMVGEGDCEGYSSLAKMPSFDPDLIWEVL 101
              +S VSEDGFW+ +NS PS S   SA       E + EG  SLAKMPSFDP+LIWEVL
Sbjct: 268 --MASDVSEDGFWKCENSQPSCSVDGSAVVAE---ESESEG-CSLAKMPSFDPELIWEVL 322

[Close]

BLAST of Cp4.1LG01g00420 vs. NCBI nr
Match: gi|970044453|ref|XP_015083644.1| (PREDICTED: ethylene-responsive transcription factor ERF061-like [Solanum pennellii])

HSP 1 Score: 59.3 bits (142), Expect = 4.4e-06
Identity = 43/100 (43.00%), Postives = 56/100 (56.00%), Query Frame = 1


Query: 1   MKRERAKKRSKKLDPQNIPVSESSSPSPMAATWCSSGETGCSSAVSEDGFWRTDNSLPSS 60
           +KRE+AKK +KK       V E+   S    T  ++  T  S +VSEDG WR+++S  S 
Sbjct: 200 VKREKAKKAAKKKSENESKVKETMDSSSSTTTTTTTTTTMISPSVSEDGLWRSEDSTCSV 259

Query: 61  SSSVSAAAVAMVGEGDCEGYSSLAKMPSFDPDLIWEVLAN 101
                   + M  E D     SLA+MPSFDP+LIWEVLAN
Sbjct: 260 FGDCLKDPL-MESEFDS---CSLARMPSFDPELIWEVLAN 295

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g00420 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g00420 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV16_CUCSA	2.2e-28	68.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G051500 PE=4 SV=1	[more]
W6FTE9_9ROSA	1.2e-07	45.54	Dehydration responsive element binding transcription factor OS=Morus notabilis G...	[more]
A0A059C2I9_EUCGR	2.4e-06	42.62	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00857 PE=4 SV=1	[more]
B9GXH6_POPTR	6.9e-06	42.62	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s13910g PE=4 SV=1	[more]

BLAST of Cp4.1LG01g00420 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G64380.1	4.7e-06	39.29	Integrase-type DNA-binding superfamily protein	[more]

BLAST of Cp4.1LG01g00420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198240\|gb\|KGN53398.1\|	3.1e-28	68.18	hypothetical protein Csa_4G051500 [Cucumis sativus]	[more]
gi\|449464092\|ref\|XP_004149763.1\|	3.1e-28	68.18	PREDICTED: ethylene-responsive transcription factor ERF061-like [Cucumis sativus...	[more]
gi\|703100076\|ref\|XP_010096822.1\|	1.8e-07	45.54	Ethylene-responsive transcription factor [Morus notabilis]	[more]
gi\|702338308\|ref\|XP_010055858.1\|	3.4e-06	42.62	PREDICTED: ethylene-responsive transcription factor ERF061-like [Eucalyptus gran...	[more]
gi\|970044453\|ref\|XP_015083644.1\|	4.4e-06	43.00	PREDICTED: ethylene-responsive transcription factor ERF061-like [Solanum pennell...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g00420.1	Cp4.1LG01g00420.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g00420	CmaCh04G006970	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g00420	CmoCh16G006010	Cucurbita moschata (Rifu)	cmocpeB313
Cp4.1LG01g00420	CmoCh04G007400	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g00420	CSPI04G06310	Wild cucumber (PI 183967)	cpecpiB405
Cp4.1LG01g00420	Lsi07G007130	Bottle gourd (USVL1VR-Ls)	cpelsiB378
Cp4.1LG01g00420	CsaV3_4G006510	Cucumber (Chinese Long) v3	cpecucB0503
Cp4.1LG01g00420	Bhi01G002290	Wax gourd	cpewgoB0518
Cp4.1LG01g00420	CsGy4G006230	Cucumber (Gy14) v2	cgybcpeB508
Cp4.1LG01g00420	Carg22245	Silver-seed gourd	carcpeB0839
Cp4.1LG01g00420	Carg13063	Silver-seed gourd	carcpeB0061

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g00420	Cp4.1LG14g02580	Cucurbita pepo (Zucchini)	cpecpeB233

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g00420	Melon (DHL92) v3.6.1	cpemedB486
Cp4.1LG01g00420	Melon (DHL92) v3.6.1	cpemedB499
Cp4.1LG01g00420	Cucumber (Chinese Long) v3	cpecucB0538
Cp4.1LG01g00420	Cucurbita pepo (Zucchini)	cpecpeB206
Cp4.1LG01g00420	Cucumber (Gy14) v1	cgycpeB0239
Cp4.1LG01g00420	Cucurbita maxima (Rimu)	cmacpeB324
Cp4.1LG01g00420	Cucurbita maxima (Rimu)	cmacpeB350
Cp4.1LG01g00420	Cucurbita moschata (Rifu)	cmocpeB287
Cp4.1LG01g00420	Wild cucumber (PI 183967)	cpecpiB431
Cp4.1LG01g00420	Cucumber (Chinese Long) v2	cpecuB406
Cp4.1LG01g00420	Cucumber (Chinese Long) v2	cpecuB432
Cp4.1LG01g00420	Watermelon (Charleston Gray)	cpewcgB413
Cp4.1LG01g00420	Watermelon (97103) v1	cpewmB407
Cp4.1LG01g00420	Melon (DHL92) v3.5.1	cpemeB362
Cp4.1LG01g00420	Melon (DHL92) v3.5.1	cpemeB415
Cp4.1LG01g00420	Melon (DHL92) v3.5.1	cpemeB427