Cp4.1LG01g00340 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG01g00340
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionEthylene-responsive transcription factor CRF2
LocationCp4.1LG01 : 3664021 .. 3664905 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGAATGGATTTGTTCTCCAGTCTTCTTGTACCTTCGGTTAAGTACTCTGAACATCGAAACCACACCAAGCACTTTTCTCCGCCATTAATGGCGCCTAAGCTCGTCAGGATCTCTGTAACTGACGAAGATGCCACTGATTCTTCTAGTGATGAAAAGGAAGAACAACACGTCTCCCGACGAGTCAAGAAGTTTATTACCGAGATTACGATCGAGGCCTTGGGGAGAAGAGACCGGAAGAAGTCCACCGCCGGGAAATCGAATTTACGGAAGCCGCTACAGCCGGGAACTAAGAAATTCCGCGGCGTGAGGCAACGGCCCTGGGGAAAATGGGCGGCTGAGATTAGAGATCCTTTGCGACGTGTACGCATCTGGTTAGGTACCTACAATACGGCTGAAGAAGCCGCTATGGTGTACGACAACGCTGCCATTCAACTCCGTGGACCCACCGCCCAAACTAACTTCAGTCCTCCGCCGGCAGTGAGCTCCAGCAATGTCTCCGTTGAGGAGACCAACGACAATCTCTCTTCTCCGACCTCCGTTCTTCGTTGCCCCTCGCCGTCGACGAATGAAAAATCCCCTGAAACTGCTTCAACCGGTAAAGAAACCCGCCGTGCCGACTCCTTCTGTTCGAACTGCGATTCGTTTTACCCCAACGATATCTTCGACTTCCAACCGCCGATTCCGTCACTATTCGGCGATACAGCTCTCAACGACGCCGTTTTGAGGGGCGACTACGGCAGTAGCATGTTTATTAACCCGGATGATGATTTCGGGTTCGAGTTAGGATTCGGGTTCAGACCCTCCACGTGGCATATGAGTGAAAATTCTTTCCAAGACATCAGCGACATATTCGGGTCGGATCCTCTCGTTGCGCTTTAA

mRNA sequence

ATGGAAGGAATGGATTTGTTCTCCAGTCTTCTTGTACCTTCGGTTAAGTACTCTGAACATCGAAACCACACCAAGCACTTTTCTCCGCCATTAATGGCGCCTAAGCTCGTCAGGATCTCTGTAACTGACGAAGATGCCACTGATTCTTCTAAAACCCGCCGTGCCGACTCCTTCTGTTCGAACTGCGATTCGTTTTACCCCAACGATATCTTCGACTTCCAACCGCCGATTCCGTCACTATTCGGCGATACAGCTCTCAACGACGCCGTTTTGAGGGGCGACTACGGCAGTAGCATGTTTATTAACCCGGATGATGATTTCGGGTTCGAGTTAGGATTCGGGTTCAGACCCTCCACGTGGCATATGAGTGAAAATTCTTTCCAAGACATCAGCGACATATTCGGGTCGGATCCTCTCGTTGCGCTTTAA

Coding sequence (CDS)

ATGGAAGGAATGGATTTGTTCTCCAGTCTTCTTGTACCTTCGGTTAAGTACTCTGAACATCGAAACCACACCAAGCACTTTTCTCCGCCATTAATGGCGCCTAAGCTCGTCAGGATCTCTGTAACTGACGAAGATGCCACTGATTCTTCTAAAACCCGCCGTGCCGACTCCTTCTGTTCGAACTGCGATTCGTTTTACCCCAACGATATCTTCGACTTCCAACCGCCGATTCCGTCACTATTCGGCGATACAGCTCTCAACGACGCCGTTTTGAGGGGCGACTACGGCAGTAGCATGTTTATTAACCCGGATGATGATTTCGGGTTCGAGTTAGGATTCGGGTTCAGACCCTCCACGTGGCATATGAGTGAAAATTCTTTCCAAGACATCAGCGACATATTCGGGTCGGATCCTCTCGTTGCGCTTTAA

Protein sequence

MEGMDLFSSLLVPSVKYSEHRNHTKHFSPPLMAPKLVRISVTDEDATDSSKTRRADSFCSNCDSFYPNDIFDFQPPIPSLFGDTALNDAVLRGDYGSSMFINPDDDFGFELGFGFRPSTWHMSENSFQDISDIFGSDPLVAL
BLAST of Cp4.1LG01g00340 vs. Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.4e-07
Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 1

Query: 65  FYPNDIFDFQPPI-PSLFGDTALNDAVLRGDYGSSMFINPDDDFGFELGFGFRPSTWHMS 124
           F  +D+FDF+  + P   G     + +   D  + M      +FGF+ G G   S+WHM 
Sbjct: 274 FSDDDVFDFRSSVVPDYLGGDLFGEDLFTADMCTDM------NFGFDFGSGL--SSWHM- 333

Query: 125 ENSFQDISDIFGSDPLVAL 143
           E+ FQDI D+FGSDPL+A+
Sbjct: 334 EDHFQDIGDLFGSDPLLAV 343

BLAST of Cp4.1LG01g00340 vs. TrEMBL
Match: A0A0A0KWY5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G051360 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.1e-28
Identity = 63/86 (73.26%), Postives = 70/86 (81.40%), Query Frame = 1

Query: 57  SFCSNCDSFYPNDIFDFQPPIPSLFGDTALNDAVLRGDYGSSMFINPDDDFGFELGFGFR 116
           SF SNCD+F+PNDIFDFQ P+PS F D  LNDA+L+GDYGSSMFINP DD  FE GFGF 
Sbjct: 236 SFHSNCDTFFPNDIFDFQAPVPSPFEDKLLNDALLKGDYGSSMFINPGDD--FEFGFGFG 295

Query: 117 PSTWHMSENSFQDISDIFGSDPLVAL 143
            STWH  E+SF D SDIFGSDPL+AL
Sbjct: 296 LSTWHTVEDSFLDFSDIFGSDPLLAL 319

BLAST of Cp4.1LG01g00340 vs. TrEMBL
Match: A0A059CGU5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01775 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.2e-10
Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 1

Query: 40  SVTDEDATDSSKTRRADSFCSNCDSFYPNDIFDFQPPIPSLFGDTALNDAVLRGDYGSSM 99
           S  DE    ++ +  A SF    +S  P+D FDF+   PSLF + A     +  D     
Sbjct: 221 SAGDESCASANASEHAASF----ESLLPDDFFDFRSSAPSLFDEYASFGESMFKDDVVDA 280

Query: 100 FINPDDDFGFELGFGFRPSTWHMSENSFQDISDIFGSDPLVAL 143
           F+NP +DFGF    G   S W + ++ FQDI D+FGSDPL+A+
Sbjct: 281 FMNPGEDFGFGFCSGSGSSCWTVDDDHFQDIGDLFGSDPLLAM 319

BLAST of Cp4.1LG01g00340 vs. TrEMBL
Match: B9RCN4_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_1690990 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.2e-10
Identity = 50/162 (30.86%), Postives = 83/162 (51.23%), Query Frame = 1

Query: 1   MEGMDLFSSLLVPSVKYSEHRN---HTKHFSPPLMAPKLVRISVTDEDATD-----SSKT 60
           + G D  ++ + P  K SE  N    +++   P+   +    + ++E+A       SSK 
Sbjct: 160 LRGSDALTNFITPPAKLSEPSNSGEESQNVCSPISVLRFPSSTSSNEEAESQGAVFSSKE 219

Query: 61  RR-----------ADSFCSNCDSFYPNDIFDFQPPIPSLFGDTAL-NDAVLRGDYGSSMF 120
                        +++F S C S +PN  FDFQ  +  +F +T +  D  L  D G  MF
Sbjct: 220 NNEIRDMKEESSVSENF-SECSSMFPNYFFDFQTSMRDIFEETNMVQDGFLSDDLGD-MF 279

Query: 121 INPDDDFGFELGFGFRPSTWHMSENSFQDISDIFGSDPLVAL 143
           ++   DFGF L      S+W+ ++++FQDI+D+FGSDPL+A+
Sbjct: 280 LDTSVDFGFGL------SSWNNTQDNFQDIADLFGSDPLIAI 313

BLAST of Cp4.1LG01g00340 vs. TrEMBL
Match: A5BPK7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007771 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.5e-10
Identity = 49/129 (37.98%), Postives = 70/129 (54.26%), Query Frame = 1

Query: 24  TKHFSPPLMA-PKLVRISVTDEDATDSSKTRR-------ADSFC--SNCDSFYPNDIFDF 83
           T   SPP +  PK+  ++VT   + + S+ +        +D+F   S  D+ + ND FDF
Sbjct: 172 TNFASPPAVTKPKIEPVTVTCSSSGEESQQQSLLSDLGVSDNFLDVSEFDTLFVNDAFDF 231

Query: 84  QPPIPSLFGDTALNDAVLRGDYGSSMFINPDDDFGFELGFGFRPSTWHMSENSFQDISDI 143
           Q  +P  FG+T L D++LR D  S +F+   +DFGF   F   P      +  FQDI D+
Sbjct: 232 QSSVPEFFGETNLLDSILREDC-SDIFLKSSEDFGFR--FPTSPV-----DEYFQDIGDL 291

BLAST of Cp4.1LG01g00340 vs. TrEMBL
Match: A0A0C5AMM8_BETPL (ERF9 protein OS=Betula platyphylla GN=ERF9 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.5e-09
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 1

Query: 60  SNCDSFYPNDIFDFQPPIPSLFGDTALNDAVLRGDYGSSMFINPDDDFGFELGFGFRPST 119
           S  DSF PN+IFDFQ  +P  F +T+L  +V   +Y   MF++  ++F    GFGF  S 
Sbjct: 248 SALDSFIPNNIFDFQTSVPDPFDETSLRGSVFGEEYCGDMFLSSCENF----GFGF--SR 307

Query: 120 WHMSENSFQDISDIFGSDPLV 141
            H+ ++ FQDI DIFGSDPLV
Sbjct: 308 LHV-DDYFQDIGDIFGSDPLV 321

BLAST of Cp4.1LG01g00340 vs. TAIR10
Match: AT4G23750.1 (AT4G23750.1 cytokinin response factor 2)

HSP 1 Score: 55.1 bits (131), Expect = 4.2e-08
Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 1

Query: 65  FYPNDIFDFQPPI-PSLFGDTALNDAVLRGDYGSSMFINPDDDFGFELGFGFRPSTWHMS 124
           F  +D+FDF+  + P   G     + +   D  + M      +FGF+ G G   S+WHM 
Sbjct: 274 FSDDDVFDFRSSVVPDYLGGDLFGEDLFTADMCTDM------NFGFDFGSGL--SSWHM- 333

Query: 125 ENSFQDISDIFGSDPLVAL 143
           E+ FQDI D+FGSDPL+A+
Sbjct: 334 EDHFQDIGDLFGSDPLLAV 343

BLAST of Cp4.1LG01g00340 vs. TAIR10
Match: AT4G11140.1 (AT4G11140.1 cytokinin response factor 1)

HSP 1 Score: 48.1 bits (113), Expect = 5.1e-06
Identity = 28/79 (35.44%), Postives = 42/79 (53.16%), Query Frame = 1

Query: 65  FYPNDIFDFQPPIPSLFGDTALNDAVLRGD-YGSSMFINPDDDFGFELGFGFRPSTWHMS 124
           F  +D+F F   +   FG          GD +G ++F +     GF  G G   S+WH+ 
Sbjct: 220 FSDDDVFGFSTSMSESFG----------GDLFGDNLFADMSFGSGFGFGSGSGFSSWHV- 279

Query: 125 ENSFQDISDIFGSDPLVAL 143
           E+ FQDI D+FGSDP++ +
Sbjct: 280 EDHFQDIGDLFGSDPVLTV 287

BLAST of Cp4.1LG01g00340 vs. NCBI nr
Match: gi|659102142|ref|XP_008451973.1| (PREDICTED: ethylene-responsive transcription factor CRF2-like [Cucumis melo])

HSP 1 Score: 136.0 bits (341), Expect = 5.3e-29
Identity = 66/95 (69.47%), Postives = 74/95 (77.89%), Query Frame = 1

Query: 48  DSSKTRRADSFCSNCDSFYPNDIFDFQPPIPSLFGDTALNDAVLRGDYGSSMFINPDDDF 107
           D S+     SF SNCD+F+PNDIFDFQPP+PS F D  LNDA+L+GDYGSSMFINP DD 
Sbjct: 223 DESEKFSDFSFHSNCDTFFPNDIFDFQPPVPSPFDDKLLNDALLKGDYGSSMFINPGDD- 282

Query: 108 GFELGFGFRPSTWHMSENSFQDISDIFGSDPLVAL 143
            FE GFGF  STWH  E+SF D SDIFGSDPL+AL
Sbjct: 283 -FEFGFGFGLSTWHTVEDSFLDFSDIFGSDPLLAL 315

BLAST of Cp4.1LG01g00340 vs. NCBI nr
Match: gi|449464098|ref|XP_004149766.1| (PREDICTED: ethylene-responsive transcription factor CRF2-like [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 5.8e-28
Identity = 63/86 (73.26%), Postives = 70/86 (81.40%), Query Frame = 1

Query: 57  SFCSNCDSFYPNDIFDFQPPIPSLFGDTALNDAVLRGDYGSSMFINPDDDFGFELGFGFR 116
           SF SNCD+F+PNDIFDFQ P+PS F D  LNDA+L+GDYGSSMFINP DD  FE GFGF 
Sbjct: 236 SFHSNCDTFFPNDIFDFQAPVPSPFEDKLLNDALLKGDYGSSMFINPGDD--FEFGFGFG 295

Query: 117 PSTWHMSENSFQDISDIFGSDPLVAL 143
            STWH  E+SF D SDIFGSDPL+AL
Sbjct: 296 LSTWHTVEDSFLDFSDIFGSDPLLAL 319

BLAST of Cp4.1LG01g00340 vs. NCBI nr
Match: gi|702323569|ref|XP_010053170.1| (PREDICTED: ethylene-responsive transcription factor CRF2 [Eucalyptus grandis])

HSP 1 Score: 73.6 bits (179), Expect = 3.2e-10
Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 1

Query: 40  SVTDEDATDSSKTRRADSFCSNCDSFYPNDIFDFQPPIPSLFGDTALNDAVLRGDYGSSM 99
           S  DE    ++ +  A SF    +S  P+D FDF+   PSLF + A     +  D     
Sbjct: 221 SAGDESCASANASEHAASF----ESLLPDDFFDFRSSAPSLFDEYASFGESMFKDDVVDA 280

Query: 100 FINPDDDFGFELGFGFRPSTWHMSENSFQDISDIFGSDPLVAL 143
           F+NP +DFGF    G   S W + ++ FQDI D+FGSDPL+A+
Sbjct: 281 FMNPGEDFGFGFCSGSGSSCWTVDDDHFQDIGDLFGSDPLLAM 319

BLAST of Cp4.1LG01g00340 vs. NCBI nr
Match: gi|255537703|ref|XP_002509918.1| (PREDICTED: ethylene-responsive transcription factor CRF2 [Ricinus communis])

HSP 1 Score: 73.6 bits (179), Expect = 3.2e-10
Identity = 50/162 (30.86%), Postives = 83/162 (51.23%), Query Frame = 1

Query: 1   MEGMDLFSSLLVPSVKYSEHRN---HTKHFSPPLMAPKLVRISVTDEDATD-----SSKT 60
           + G D  ++ + P  K SE  N    +++   P+   +    + ++E+A       SSK 
Sbjct: 160 LRGSDALTNFITPPAKLSEPSNSGEESQNVCSPISVLRFPSSTSSNEEAESQGAVFSSKE 219

Query: 61  RR-----------ADSFCSNCDSFYPNDIFDFQPPIPSLFGDTAL-NDAVLRGDYGSSMF 120
                        +++F S C S +PN  FDFQ  +  +F +T +  D  L  D G  MF
Sbjct: 220 NNEIRDMKEESSVSENF-SECSSMFPNYFFDFQTSMRDIFEETNMVQDGFLSDDLGD-MF 279

Query: 121 INPDDDFGFELGFGFRPSTWHMSENSFQDISDIFGSDPLVAL 143
           ++   DFGF L      S+W+ ++++FQDI+D+FGSDPL+A+
Sbjct: 280 LDTSVDFGFGL------SSWNNTQDNFQDIADLFGSDPLIAI 313

BLAST of Cp4.1LG01g00340 vs. NCBI nr
Match: gi|147801286|emb|CAN77118.1| (hypothetical protein VITISV_007771 [Vitis vinifera])

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 49/129 (37.98%), Postives = 70/129 (54.26%), Query Frame = 1

Query: 24  TKHFSPPLMA-PKLVRISVTDEDATDSSKTRR-------ADSFC--SNCDSFYPNDIFDF 83
           T   SPP +  PK+  ++VT   + + S+ +        +D+F   S  D+ + ND FDF
Sbjct: 172 TNFASPPAVTKPKIEPVTVTCSSSGEESQQQSLLSDLGVSDNFLDVSEFDTLFVNDAFDF 231

Query: 84  QPPIPSLFGDTALNDAVLRGDYGSSMFINPDDDFGFELGFGFRPSTWHMSENSFQDISDI 143
           Q  +P  FG+T L D++LR D  S +F+   +DFGF   F   P      +  FQDI D+
Sbjct: 232 QSSVPEFFGETNLLDSILREDC-SDIFLKSSEDFGFR--FPTSPV-----DEYFQDIGDL 291

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CRF2_ARATH7.4e-0739.24Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE... [more]
Match NameE-valueIdentityDescription
A0A0A0KWY5_CUCSA4.1e-2873.26Uncharacterized protein OS=Cucumis sativus GN=Csa_4G051360 PE=4 SV=1[more]
A0A059CGU5_EUCGR2.2e-1038.83Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01775 PE=4 SV=1[more]
B9RCN4_RICCO2.2e-1030.86DNA binding protein, putative OS=Ricinus communis GN=RCOM_1690990 PE=4 SV=1[more]
A5BPK7_VITVI8.5e-1037.98Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007771 PE=4 SV=1[more]
A0A0C5AMM8_BETPL5.5e-0948.15ERF9 protein OS=Betula platyphylla GN=ERF9 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT4G23750.14.2e-0839.24 cytokinin response factor 2[more]
AT4G11140.15.1e-0635.44 cytokinin response factor 1[more]
Match NameE-valueIdentityDescription
gi|659102142|ref|XP_008451973.1|5.3e-2969.47PREDICTED: ethylene-responsive transcription factor CRF2-like [Cucumis melo][more]
gi|449464098|ref|XP_004149766.1|5.8e-2873.26PREDICTED: ethylene-responsive transcription factor CRF2-like [Cucumis sativus][more]
gi|702323569|ref|XP_010053170.1|3.2e-1038.83PREDICTED: ethylene-responsive transcription factor CRF2 [Eucalyptus grandis][more]
gi|255537703|ref|XP_002509918.1|3.2e-1030.86PREDICTED: ethylene-responsive transcription factor CRF2 [Ricinus communis][more]
gi|147801286|emb|CAN77118.1|1.2e-0937.98hypothetical protein VITISV_007771 [Vitis vinifera][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g00340.1Cp4.1LG01g00340.1mRNA


The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g00340Cp4.1LG14g02370Cucurbita pepo (Zucchini)cpecpeB233
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g00340Cucurbita pepo (Zucchini)cpecpeB206
Cp4.1LG01g00340Cucumber (Gy14) v1cgycpeB0239
Cp4.1LG01g00340Cucurbita maxima (Rimu)cmacpeB324
Cp4.1LG01g00340Cucurbita maxima (Rimu)cmacpeB350
Cp4.1LG01g00340Cucurbita moschata (Rifu)cmocpeB287
Cp4.1LG01g00340Wild cucumber (PI 183967)cpecpiB431
Cp4.1LG01g00340Cucumber (Chinese Long) v2cpecuB432
Cp4.1LG01g00340Melon (DHL92) v3.5.1cpemeB362
Cp4.1LG01g00340Cucumber (Chinese Long) v3cpecucB0538