Cp4.1LG01g00230 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g00230
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
LocationCp4.1LG01 : 3775809 .. 3779109 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATGGTGTTGGTATCGACCAATGCAAACAACTTACTCTCAAAGCTAGCCAAAGGCAACGGCCACGGCGAGGATTCTCCTTATTTCGACGGCTGGAAGGCCTACGACACTGNCCAACACAAGTCAACCACACAACCCACCTCCACTCACCTCTTCGCTTGCCCTTTCCATGGCTGTCCCCTTCCCCGTCTTCGCTTCTGCCACCACCGCCACAACCTCCCACCAATCACTTTCTCTTTCCGTCTACCCCCGTTCCTTCCCCAGAACAAATTTCAATGTTGTTTCCTCCTCCTCTTCGCGCCCTTCCATCCGTGTGAATTCTGCCGCTTCTCCCTCTGTGGAGGCGGCCACCGCCGTCGACTCTGATCGGGCTGCCGCATCAGATTCTCGGTCTAAAGCCTTGCCGTTTCGGATTGGACATGGGTTCGATCTCCATAGGTTGGAGCCTGGGTATCCTTTGATTATTGGGGGAATTAATATTCCCCATGACAGAGGCTGCGAGGCTCATTCCGATGGTAATTTCTTTGCTTCTAGTTTGTTTTCCTGTTTCTGTGTTCTTGTTGGTTGCTGTTCTGCTGAAGAATTAGGGAATCTTCTTACGAACTTAATTGTTTGTATTCTAATTCTTTAAATAATTGGCTCAATTTTGTTGGTTTCATTCATTTCTTGATTGCAGCAATGACGAATTCTAAATTTCTACATGGAATGAGGGAATTTTATATTTACAAACTTTTAAATTTTGAAGTGGTTCTTTGTTTTGTTGATTTAGGGGATGTTCTACTTCACTGTGTGGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCTGATATTGGACAAATCTTTCCAGATTCAGATCCCAAATGGAAGGGTGCCCCTTCATCTGTTTTCATTAAAGAAGCTGTAAGTAGTTCTGGCATACCAAATTCAAACTCACTGCCAAGTTTTGTTATCCTCTTTGCCTTGATTAATTTAAAATGATCTTAGGATTCTCTGGTTGCTTCGCTTTCATACTTGATATTATGATACCTTTATGTTTGCTTGAAGTTCACTTTAGGGGGACTAGTATGACCAATTATGAGAGGATGAAAAGTATAAGAAAGTAGAGCTTTTATTTGAGGTTGTAGGGAAAAATGAATGACTTTTAGAGAATATTAATGAATTTCTTCGTTAAAAGAAAGAAAAATTGATGTGAATGTTGTTGGAAGATAGGCTTTGTGAGATCCCACGTCGGTTGGGAAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAACATACGTGTTTTAAAAACCTTGAGGAGAATCCCAAAGGAGAAGGCCCAAAGAGAACAATATCTGCTAGCGGTGGGTTTGCACCGTTACAAATGGTATTAGAGCCAGACACCGGGTGATGTGCTAGTGGAAGGCTGAGTCCCGAAGGAGGGTGGACATGAGGCTGTGTGCCAGCGAGGAGCTGGGCCCCAAAAGAGGGTGGATTGTGAGATCTCACATTGGTTGGGAGGAGAACGAAACATTCTTTATAAGAGTGTGGAAACCTCTCCCTAGCAGACGTGTTTTAAAAACCTTGAGGAGAAGCTCGAAAGGGAAAACCCAAAAAGGACAATATCTACTAGCAGTGGGCTTGGGCCGTTACGGGCTTGAGGTGTTTAGGCACATGCCTCAAGCATACTTCATTAAGGGATCCTCACTTCAAAAGCGAGGGGCAGAGAAAGGAAGTTCTACACAAACAGGGGAGCCTACCTTAAGGTGTTTAGGCACATGCCTCAAGCATACTTCATTAAGGGATCCTCACTTCAAAAGCGAGGGGCAGAGAAAGGAAGTTCTACACAAACAGGGGAGCCTACCTTAAGGTGTTTAGGCACATGCCTCAAGCATACTTCATTAAGGGATCCTCACTTCAAAAGCGAGGGGCAGAGAAAGGAAGTTCTACACAAACAGGGGAGCCTACCTTAAGGTGTTTAGGCACATGCCTCAAGCATACTTCATTAAGGGATCCTCACTTCAAAAGCGAGGGGCAGAGAAAGGAAGTTCTACACAAACAGGGGAGCCTAAGAAATTCTTCAAAACCAAAAGGAAGTGCGGAAGGATTTTCCGATTCACATTTGTATCAAAAGAGAAGAAAAGCTGCAAATCTTATAACCTTGGATTTCTCGTTTACTTCCCCCTCCGAAAAATACCATATGTTTCTGTAGTAGGGTCATGTAGTTGTCTGTCTTGTGTGAAATATTTTGGTGCACATAAGCTAGCTTGGACACTCCTAGATAAAAGATCTAGGTGCACGTAAGCTACCTTGGACACTCATAGATAAAAGATCTACGTGCACGTAAGCTAGCTTGGACACTCGCAGATAAAGAAAAGAATGGTGAGGTAAACATCCCTAATGAGTCTCTGGGAAAGGTAATCAATAATGAGAGACCTTTGTTCACCTGCTCTGTAGTTCTTCAATCTTTGTTAAACTATTGATTCATGTGTGCTTAAATATCATCCCAAAGTGAACACATAGAACATTGTAGGGGTACAAAATTTTAGACTTTCTCCTCTAATCTCGTATGAGCATATTAAAACACCATGGAATTTGAGGCCGATGAATCCATCTAGTAAACGGAAGTCGAAGTAAATAGTTTGAATTCGGTCTATTTTAGACTAAATAATGTTCCATTTTGTGATTGATGAGGATGTTTGGTGTTAATTTTGGGTGATATTCCAGGTGAGACTGATGCACGAGGCAGGTTATGAGATAGGAAACTTGGATGCCACATTGATACTCCAAAGACCAAAGCTTAGCCCTCACAAGGAAGCTATCCGAGCAAACCTCTCCGATCTTCTGGGAGCCGACCAATCTGTCGTGAATCTGAAGGCAAAAACACACGAGAAGGTCGACAGCCTCGGCGAAAACCGAAGCATTGCTGCCCATACGGTGGTCCTCCTAATGAGGAGATAGAACCCCTACCATTACTGCTGCTGCTGCTTTGTTAGTGTAATAGCAACAACACTGCTCCATTTCAAGTGGAATTTGCTTTAGTGTCAATACTTTGAATCTCCCCTCCCTTCCACAGTTAAACGTTTTAATCATTCAACAACGTTAAAATGAAAATGATATGGTGAAGAACATTAGAAATTGGCTACAATTATTATTATTTATTTTTTTTTTTTTCTTCTTGTTCTTGGTGTGTGAAAGATGTAAAGATGAGGTGGAAATTACTCTTCCATTTTGTCTAAAGCCAGTAATCATTAATTATATCTGAGTCGAATTTTGTAAAATTGGACCATATTTAATGTCCAATTGGACCAT

mRNA sequence

AAAATGGTGTTGGTATCGACCAATGCAAACAACTTACTCTCAAAGCTAGCCAAAGGCAACGGCCACGGCGAGGATTCTCCTTATTTCGACGGCTGGAAGGCCTACGACACTGNCCAACACAAGTCAACCACACAACCCACCTCCACTCACCTCTTCGCTTGCCCTTTCCATGGCTGTCCCCTTCCCCGTCTTCGCTTCTGCCACCACCGCCACAACCTCCCACCAATCACTTTCTCTTTCCGTCTACCCCCGTTCCTTCCCCAGAACAAATTTCAATGTTGTTTCCTCCTCCTCTTCGCGCCCTTCCATCCGTGTGAATTCTGCCGCTTCTCCCTCTGTGGAGGCGGCCACCGCCGTCGACTCTGATCGGGCTGCCGCATCAGATTCTCGGTCTAAAGCCTTGCCGTTTCGGATTGGACATGGGTTCGATCTCCATAGGTTGGAGCCTGGGTATCCTTTGATTATTGGGGGAATTAATATTCCCCATGACAGAGGCTGCGAGGCTCATTCCGATGGGGATGTTCTACTTCACTGTGTGGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCTGATATTGGACAAATCTTTCCAGATTCAGATCCCAAATGGAAGGGTGCCCCTTCATCTGTTTTCATTAAAGAAGCTGTGAGACTGATGCACGAGGCAGGTTATGAGATAGGAAACTTGGATGCCACATTGATACTCCAAAGACCAAAGCTTAGCCCTCACAAGGAAGCTATCCGAGCAAACCTCTCCGATCTTCTGGGAGCCGACCAATCTGTCGTGAATCTGAAGGCAAAAACACACGAGAAGGTCGACAGCCTCGGCGAAAACCGAAGCATTGCTGCCCATACGGTGGTCCTCCTAATGAGGAGATAGAACCCCTACCATTACTGCTGCTGCTGCTTTGTTAGTGTAATAGCAACAACACTGCTCCATTTCAAGTGGAATTTGCTTTAGTGTCAATACTTTGAATCTCCCCTCCCTTCCACAGTTAAACGTTTTAATCATTCAACAACGTTAAAATGAAAATGATATGGTGAAGAACATTAGAAATTGGCTACAATTATTATTATTTATTTTTTTTTTTTTCTTCTTGTTCTTGGTGTGTGAAAGATGTAAAGATGAGGTGGAAATTACTCTTCCATTTTGTCTAAAGCCAGTAATCATTAATTATATCTGAGTCGAATTTTGTAAAATTGGACCATATTTAATGTCCAATTGGACCAT

Coding sequence (CDS)

ATGGCTGTCCCCTTCCCCGTCTTCGCTTCTGCCACCACCGCCACAACCTCCCACCAATCACTTTCTCTTTCCGTCTACCCCCGTTCCTTCCCCAGAACAAATTTCAATGTTGTTTCCTCCTCCTCTTCGCGCCCTTCCATCCGTGTGAATTCTGCCGCTTCTCCCTCTGTGGAGGCGGCCACCGCCGTCGACTCTGATCGGGCTGCCGCATCAGATTCTCGGTCTAAAGCCTTGCCGTTTCGGATTGGACATGGGTTCGATCTCCATAGGTTGGAGCCTGGGTATCCTTTGATTATTGGGGGAATTAATATTCCCCATGACAGAGGCTGCGAGGCTCATTCCGATGGGGATGTTCTACTTCACTGTGTGGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCTGATATTGGACAAATCTTTCCAGATTCAGATCCCAAATGGAAGGGTGCCCCTTCATCTGTTTTCATTAAAGAAGCTGTGAGACTGATGCACGAGGCAGGTTATGAGATAGGAAACTTGGATGCCACATTGATACTCCAAAGACCAAAGCTTAGCCCTCACAAGGAAGCTATCCGAGCAAACCTCTCCGATCTTCTGGGAGCCGACCAATCTGTCGTGAATCTGAAGGCAAAAACACACGAGAAGGTCGACAGCCTCGGCGAAAACCGAAGCATTGCTGCCCATACGGTGGTCCTCCTAATGAGGAGATAG

Protein sequence

MAVPFPVFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSVEAATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR
Homology
[Close]
BLAST of Cp4.1LG01g00230 vs. Swiss-Prot
Match: ISPF_ARATH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=ISPF PE=1 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 7.8e-86
Identity = 161/197 (81.73%), Postives = 173/197 (87.82%), Query Frame = 1 

Query: 40  SSSSRPSIRVNSAASPSVEAATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLII 99
           S S RPS  V++A+S       AVD + +  S+  +K LPFRIGHGFDLHRLEPGYPLII
Sbjct: 42  SLSCRPSASVSAASS-------AVDVNESVTSEKPTKTLPFRIGHGFDLHRLEPGYPLII 101

Query: 100 GGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEA 159
           GGI IPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEA
Sbjct: 102 GGIVIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEA 161

Query: 160 VRLMHEAGYEIGNLDATLILQRPKLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSL 219
           VRLM EAGYEIGNLDATLILQRPK+SPHKE IR+NLS LLGAD SVVNLKAKTHEKVDSL
Sbjct: 162 VRLMDEAGYEIGNLDATLILQRPKISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSL 221

Query: 220 GENRSIAAHTVVLLMRR 237
           GENRSIAAHTV+LLM++
Sbjct: 222 GENRSIAAHTVILLMKK 231

[Close]
BLAST of Cp4.1LG01g00230 vs. Swiss-Prot
Match: ISPF_ORYSJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=ISPF PE=2 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 1.2e-83
Identity = 156/200 (78.00%), Postives = 176/200 (88.00%), Query Frame = 1 

Query: 39  SSSSSRPSIRVNSAASPSVEAATAVDSDR--AAASDSRSKALPFRIGHGFDLHRLEPGYP 98
           S+S +RPS+R+     PS  AA AV ++   A A+  +  ALPFR+GHGFDLHRLEPG P
Sbjct: 26  SASPARPSLRLRR---PSTLAAAAVQAEHQPAVAAAPKPPALPFRVGHGFDLHRLEPGLP 85

Query: 99  LIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFI 158
           LIIGGI+IPHDRGC+AHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDP+WKGA SSVF+
Sbjct: 86  LIIGGIDIPHDRGCDAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPRWKGADSSVFM 145

Query: 159 KEAVRLMHEAGYEIGNLDATLILQRPKLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKV 218
           +EAV+LMHEAGYE+GNLDATLILQ+PK+SP KE IR+NL DLLGAD SVVNLKAKTHEKV
Sbjct: 146 REAVKLMHEAGYELGNLDATLILQKPKISPFKETIRSNLCDLLGADPSVVNLKAKTHEKV 205

Query: 219 DSLGENRSIAAHTVVLLMRR 237
           DSLGENRSIAAHTVVLLMR+
Sbjct: 206 DSLGENRSIAAHTVVLLMRK 222

[Close]
BLAST of Cp4.1LG01g00230 vs. Swiss-Prot
Match: ISPF_CATRO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharanthus roseus GN=ISPF PE=2 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 6.2e-83
Identity = 165/233 (70.82%), Postives = 188/233 (80.69%), Query Frame = 1 

Query: 14  ATTSHQSLSLSVYPRSFPRTNF--NVVSSSSSRPS-IRVNSAASPSVE-------AATAV 73
           AT+ + S ++     +  R NF  + V  S + PS IR+++  S ++        +  AV
Sbjct: 4   ATSFYCSTAIPSKKTNQNRENFLCSPVGGSKTTPSYIRLSTRQSRTLSLVVSAAASGAAV 63

Query: 74  DSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCV 133
           +++   A+ + SK L FR+GHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCV
Sbjct: 64  EAEPKFAAVTPSKILSFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCV 123

Query: 134 VDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQRPK 193
           VDAILGALGLPDIGQIFPD+DPKWKGAPSSVFIKEAVRLM EAGYE+GNLDATLILQRPK
Sbjct: 124 VDAILGALGLPDIGQIFPDTDPKWKGAPSSVFIKEAVRLMDEAGYELGNLDATLILQRPK 183

Query: 194 LSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 237
           +SPHKEAIR NL  LLGAD  VVNLKAKTHEKVDSLGENRSIAAHTVVLLMR+
Sbjct: 184 VSPHKEAIRQNLCQLLGADPCVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 236

[Close]
BLAST of Cp4.1LG01g00230 vs. Swiss-Prot
Match: ISPF_CUPMC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34) GN=ispF PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.3e-43
Identity = 85/156 (54.49%), Postives = 110/156 (70.51%), Query Frame = 1 

Query: 81  RIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIF 140
           RIG G+D+H L PG  LI+GG++IPHDRG   HSD D LLH V DA+ GA  L DIG+ F
Sbjct: 7   RIGQGYDVHALVPGRKLILGGVDIPHDRGLLGHSDADALLHAVTDALFGAAALGDIGRHF 66

Query: 141 PDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPHKEAIRANLSDLLG 200
           PD+DP + GA S V ++EAVR + EAGYEIGN+DAT+I Q+PKL+PH   + ANL++ LG
Sbjct: 67  PDTDPNFAGADSRVLLREAVRRVREAGYEIGNVDATVIAQKPKLAPHISGMVANLAEDLG 126

Query: 201 ADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 237
              +  N+KAKT+EK+   G+   I A   VL+ RR
Sbjct: 127 LPVTRCNVKAKTNEKLGFEGKEEGIVAQAAVLIYRR 162

[Close]
BLAST of Cp4.1LG01g00230 vs. Swiss-Prot
Match: ISPF_THISH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) GN=ispF PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.6e-43
Identity = 80/153 (52.29%), Postives = 108/153 (70.59%), Query Frame = 1 

Query: 81  RIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIF 140
           RIGHG+D+H  + G  +++GG+ IPH +   AHSDGDVL+H + DA+LGA  L DIG+ F
Sbjct: 5   RIGHGYDVHAFKAGGHVVLGGVRIPHAKAFAAHSDGDVLIHALCDALLGAAALGDIGRHF 64

Query: 141 PDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPHKEAIRANLSDLLG 200
           PD+DP +KGA S V ++  V L+HE GY +GN+DAT+I Q PK++PH EA+RANL+D LG
Sbjct: 65  PDTDPAYKGADSRVLLRRVVELLHEQGYRVGNVDATIIAQAPKMAPHIEAMRANLADDLG 124

Query: 201 ADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLL 234
                VN+KA T E++   G    IAAH V L+
Sbjct: 125 VALECVNVKATTTERLGFAGREEGIAAHAVALI 157

[Close]
BLAST of Cp4.1LG01g00230 vs. TrEMBL
Match: A0A0A0KWV1_CUCSA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucumis sativus GN=Csa_4G049620 PE=3 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 5.4e-102
Identity = 199/239 (83.26%), Postives = 209/239 (87.45%), Query Frame = 1 

Query: 1   MAVPFPVFASATTATTSHQSLSLSVYPRSFPRTNFNVVSS---SSSRPSIRVNSAASPSV 60
           MA+  P+FAS   ATTSHQSLSLS+YP SFP T F  +SS   SSS PS RVNSAAS SV
Sbjct: 1   MALSAPLFASPAAATTSHQSLSLSLYPPSFPTTKFTPLSSFSSSSSLPSFRVNSAASHSV 60

Query: 61  EAATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGD 120
            + TA+ SD      S SK LPFR+GHGFDLHRLEPGYPLIIGGI+IPHDRGCEAHSDGD
Sbjct: 61  SSTTAIKSD------SPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGD 120

Query: 121 VLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATL 180
           VLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEAVRLMHEAGY+IGNLDATL
Sbjct: 121 VLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMHEAGYDIGNLDATL 180

Query: 181 ILQRPKLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 237
           ILQRPKLSPHKEAIRA LS+LLGAD SVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR
Sbjct: 181 ILQRPKLSPHKEAIRAKLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 233

[Close]
BLAST of Cp4.1LG01g00230 vs. TrEMBL
Match: W9SB94_9ROSA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Morus notabilis GN=L484_006708 PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.4e-89
Identity = 179/237 (75.53%), Postives = 201/237 (84.81%), Query Frame = 1 

Query: 7   VFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRP-SIRVNS------AASPSVEA 66
           ++AS+    +S +  SLS +PRS   T  N  +  SS P S+R++S      +A PS  A
Sbjct: 8   LYASSLLPKSSAKYPSLSSFPRSSLFTPPNSTNLFSSSPLSLRLSSTTTPPPSAVPSASA 67

Query: 67  ATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVL 126
           A A+++  + AS +  K+LPFR+GHGFDLHRLEPGYPLIIGGINIPH+RGCEAHSDGDVL
Sbjct: 68  AAALEAQPSPASATPLKSLPFRVGHGFDLHRLEPGYPLIIGGINIPHERGCEAHSDGDVL 127

Query: 127 LHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLIL 186
           LHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLIL
Sbjct: 128 LHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLIL 187

Query: 187 QRPKLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 237
           QRPKLSPHKEAIRANLS+LLGAD +VVNLKAKTHEKVDSLGENRSIAAHTVVLLMR+
Sbjct: 188 QRPKLSPHKEAIRANLSELLGADPAVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 244

[Close]
BLAST of Cp4.1LG01g00230 vs. TrEMBL
Match: A0A0M3SH19_MORAL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Morus alba PE=2 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.5e-88
Identity = 177/241 (73.44%), Postives = 199/241 (82.57%), Query Frame = 1 

Query: 7   VFASATTATTSHQSLSLSVYPRS--FPRTNFNVVSSSSSRPSIRVNSAASPSVEA----- 66
           ++AS+    ++ +S SLS +PRS  F   N      SSS  S+R +S  +P   A     
Sbjct: 8   LYASSLLPKSAAKSPSLSCFPRSSLFTPPNSTTNLFSSSPLSLRSSSTTTPPPSAVPSAS 67

Query: 67  ----ATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSD 126
               A A+++  + AS + SK+LPFR+GHGFDLHRLEPGYPLIIGGINIPH+RGCEAHSD
Sbjct: 68  ANATAAALEAQPSPASATPSKSLPFRVGHGFDLHRLEPGYPLIIGGINIPHERGCEAHSD 127

Query: 127 GDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDA 186
           GDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFI+EAVRLMHEAGYEIGNLDA
Sbjct: 128 GDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIREAVRLMHEAGYEIGNLDA 187

Query: 187 TLILQRPKLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMR 237
           TLILQRPKLSPHKEAIRANLS+LLGAD +VVNLKAKTHEKVDSLGENRSIAAHTVVLLMR
Sbjct: 188 TLILQRPKLSPHKEAIRANLSELLGADPAVVNLKAKTHEKVDSLGENRSIAAHTVVLLMR 247

[Close]
BLAST of Cp4.1LG01g00230 vs. TrEMBL
Match: B9GKD1_POPTR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Populus trichocarpa GN=POPTR_0001s09860g PE=3 SV=2)

HSP 1 Score: 331.3 bits (848), Expect = 9.9e-88
Identity = 165/229 (72.05%), Postives = 191/229 (83.41%), Query Frame = 1 

Query: 8   FASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSVEAATAVDSDR 67
           ++  TT T +++S+S+ + P ++   +         R ++ +++A++      TA+  D 
Sbjct: 13  YSPITTKTRNNKSVSIPLQPGAYISRHVKFAVPIQKRTTLSISAAST------TAIQVDG 72

Query: 68  AAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAI 127
              S   SK LPFR+GHGFDLHRLEPGYPLIIGGI++PHDRGCEAHSDGDVLLHCVVDA+
Sbjct: 73  PTTSSKASKTLPFRVGHGFDLHRLEPGYPLIIGGIDVPHDRGCEAHSDGDVLLHCVVDAV 132

Query: 128 LGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPH 187
           LGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPH
Sbjct: 133 LGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPH 192

Query: 188 KEAIRANLSDLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 237
           KEAIRANLS+LLGAD SVVNLKAKTHEKVDSLGENRSIAAHTVVLLM++
Sbjct: 193 KEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMKK 235

[Close]
BLAST of Cp4.1LG01g00230 vs. TrEMBL
Match: A0A061G6M7_THECC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Theobroma cacao GN=TCM_016340 PE=3 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 2.9e-87
Identity = 175/234 (74.79%), Postives = 192/234 (82.05%), Query Frame = 1 

Query: 7   VFASATTATTSHQSLSLSVYPRSFPRTNFNVV----SSSSSRPSIRVNSAASPSVEAATA 66
           + A  T  T S++S+ L   PR     + N +    SSSSS  +  + ++ SP    AT+
Sbjct: 127 IIAKPTPTTISNKSILLP-NPRIITARHHNNILQSASSSSSSSAFTLTASISPG---ATS 186

Query: 67  VDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHC 126
           V  D    S   SK+LPFR+GHGFDLHRLEPGYPLIIGGI+IPHDRGCEAHSDGDVLLHC
Sbjct: 187 VAVDGPTTSTKPSKSLPFRVGHGFDLHRLEPGYPLIIGGIDIPHDRGCEAHSDGDVLLHC 246

Query: 127 VVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQRP 186
           VVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHE GYEIGNLDATLILQRP
Sbjct: 247 VVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEVGYEIGNLDATLILQRP 306

Query: 187 KLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 237
           KLSPHKEAI+ANLS+LLGAD SVVNLKAKTHEKVDSLGENRSIAAHTVVLLMR+
Sbjct: 307 KLSPHKEAIKANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 356

[Close]
BLAST of Cp4.1LG01g00230 vs. TAIR10
Match: AT1G63970.1 (AT1G63970.1 isoprenoid F)

HSP 1 Score: 318.2 bits (814), Expect = 4.4e-87
Identity = 161/197 (81.73%), Postives = 173/197 (87.82%), Query Frame = 1 

Query: 40  SSSSRPSIRVNSAASPSVEAATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLII 99
           S S RPS  V++A+S       AVD + +  S+  +K LPFRIGHGFDLHRLEPGYPLII
Sbjct: 42  SLSCRPSASVSAASS-------AVDVNESVTSEKPTKTLPFRIGHGFDLHRLEPGYPLII 101

Query: 100 GGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEA 159
           GGI IPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEA
Sbjct: 102 GGIVIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEA 161

Query: 160 VRLMHEAGYEIGNLDATLILQRPKLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSL 219
           VRLM EAGYEIGNLDATLILQRPK+SPHKE IR+NLS LLGAD SVVNLKAKTHEKVDSL
Sbjct: 162 VRLMDEAGYEIGNLDATLILQRPKISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSL 221

Query: 220 GENRSIAAHTVVLLMRR 237
           GENRSIAAHTV+LLM++
Sbjct: 222 GENRSIAAHTVILLMKK 231

[Close]
BLAST of Cp4.1LG01g00230 vs. NCBI nr
Match: gi|659102205|ref|XP_008452007.1| (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Cucumis melo])

HSP 1 Score: 384.4 bits (986), Expect = 1.4e-103
Identity = 200/236 (84.75%), Postives = 208/236 (88.14%), Query Frame = 1 

Query: 1   MAVPFPVFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSVEAA 60
           MAV  P FAS   ATTSHQS SLS YP SFPR  F  +SSSSS PS RVNSA S SV + 
Sbjct: 1   MAVSAPFFASPPAATTSHQSPSLSFYPPSFPRRIFTPLSSSSSLPSFRVNSAVSHSVSST 60

Query: 61  TAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLL 120
           TA++SD      S SK LPFR+GHGFDLHRLEPGYPLIIGGI+IPHDRGCEAHSDGDVLL
Sbjct: 61  TAIESD------SPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLL 120

Query: 121 HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQ 180
           HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGY+IGNLDATLILQ
Sbjct: 121 HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQ 180

Query: 181 RPKLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 237
           RPKLSPHKEAIRANLS+LLGAD SVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR
Sbjct: 181 RPKLSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 230

[Close]
BLAST of Cp4.1LG01g00230 vs. NCBI nr
Match: gi|449457594|ref|XP_004146533.1| (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Cucumis sativus])

HSP 1 Score: 378.6 bits (971), Expect = 7.8e-102
Identity = 199/239 (83.26%), Postives = 209/239 (87.45%), Query Frame = 1 

Query: 1   MAVPFPVFASATTATTSHQSLSLSVYPRSFPRTNFNVVSS---SSSRPSIRVNSAASPSV 60
           MA+  P+FAS   ATTSHQSLSLS+YP SFP T F  +SS   SSS PS RVNSAAS SV
Sbjct: 1   MALSAPLFASPAAATTSHQSLSLSLYPPSFPTTKFTPLSSFSSSSSLPSFRVNSAASHSV 60

Query: 61  EAATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGD 120
            + TA+ SD      S SK LPFR+GHGFDLHRLEPGYPLIIGGI+IPHDRGCEAHSDGD
Sbjct: 61  SSTTAIKSD------SPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGD 120

Query: 121 VLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATL 180
           VLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEAVRLMHEAGY+IGNLDATL
Sbjct: 121 VLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMHEAGYDIGNLDATL 180

Query: 181 ILQRPKLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 237
           ILQRPKLSPHKEAIRA LS+LLGAD SVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR
Sbjct: 181 ILQRPKLSPHKEAIRAKLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 233

[Close]
BLAST of Cp4.1LG01g00230 vs. NCBI nr
Match: gi|703160811|ref|XP_010112628.1| (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Morus notabilis])

HSP 1 Score: 337.4 bits (864), Expect = 2.0e-89
Identity = 179/237 (75.53%), Postives = 201/237 (84.81%), Query Frame = 1 

Query: 7   VFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRP-SIRVNS------AASPSVEA 66
           ++AS+    +S +  SLS +PRS   T  N  +  SS P S+R++S      +A PS  A
Sbjct: 8   LYASSLLPKSSAKYPSLSSFPRSSLFTPPNSTNLFSSSPLSLRLSSTTTPPPSAVPSASA 67

Query: 67  ATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVL 126
           A A+++  + AS +  K+LPFR+GHGFDLHRLEPGYPLIIGGINIPH+RGCEAHSDGDVL
Sbjct: 68  AAALEAQPSPASATPLKSLPFRVGHGFDLHRLEPGYPLIIGGINIPHERGCEAHSDGDVL 127

Query: 127 LHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLIL 186
           LHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLIL
Sbjct: 128 LHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLIL 187

Query: 187 QRPKLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 237
           QRPKLSPHKEAIRANLS+LLGAD +VVNLKAKTHEKVDSLGENRSIAAHTVVLLMR+
Sbjct: 188 QRPKLSPHKEAIRANLSELLGADPAVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 244

[Close]
BLAST of Cp4.1LG01g00230 vs. NCBI nr
Match: gi|720017076|ref|XP_010261353.1| (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 337.4 bits (864), Expect = 2.0e-89
Identity = 184/243 (75.72%), Postives = 204/243 (83.95%), Query Frame = 1 

Query: 1   MAVPFPVFASATTA-TTSHQSLSLSVYPRSF-PRTNFNVVS----SSSSRPSIRVNSAAS 60
           MA+  P+FAS   A TT+  +L L +   SF P  N +  S    SSSSRPS+   S+ S
Sbjct: 1   MAMASPIFASVIPAKTTAKPTLFLPIASSSFRPCNNGSHFSPGRVSSSSRPSL---SSIS 60

Query: 61  PSVEA-ATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAH 120
           P   A AT+V+ ++   S + SK+LPFR+GHGFDLHRLEPGYPLIIGGINIPHDRGCEAH
Sbjct: 61  PLTAASATSVEVEKEPTSRNSSKSLPFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAH 120

Query: 121 SDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNL 180
           SDGDVLLHCVVDAILGALGLPDIGQIFPD+DPKWKGA SSVFIKEAVRLMHEAGYE+GNL
Sbjct: 121 SDGDVLLHCVVDAILGALGLPDIGQIFPDNDPKWKGAASSVFIKEAVRLMHEAGYELGNL 180

Query: 181 DATLILQRPKLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLL 237
           DATLILQRPKLSPHKEAI+ANLS+LLGAD SVVNLKAKTHEKVDSLGENRSIAAHTVVLL
Sbjct: 181 DATLILQRPKLSPHKEAIKANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLL 240

[Close]
BLAST of Cp4.1LG01g00230 vs. NCBI nr
Match: gi|927030530|gb|ALD62475.1| (2-C-methyl-D-erythritol 2,4- cyclodiphosphate synthase [Morus alba])

HSP 1 Score: 334.0 bits (855), Expect = 2.2e-88
Identity = 177/241 (73.44%), Postives = 199/241 (82.57%), Query Frame = 1 

Query: 7   VFASATTATTSHQSLSLSVYPRS--FPRTNFNVVSSSSSRPSIRVNSAASPSVEA----- 66
           ++AS+    ++ +S SLS +PRS  F   N      SSS  S+R +S  +P   A     
Sbjct: 8   LYASSLLPKSAAKSPSLSCFPRSSLFTPPNSTTNLFSSSPLSLRSSSTTTPPPSAVPSAS 67

Query: 67  ----ATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSD 126
               A A+++  + AS + SK+LPFR+GHGFDLHRLEPGYPLIIGGINIPH+RGCEAHSD
Sbjct: 68  ANATAAALEAQPSPASATPSKSLPFRVGHGFDLHRLEPGYPLIIGGINIPHERGCEAHSD 127

Query: 127 GDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDA 186
           GDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFI+EAVRLMHEAGYEIGNLDA
Sbjct: 128 GDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIREAVRLMHEAGYEIGNLDA 187

Query: 187 TLILQRPKLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMR 237
           TLILQRPKLSPHKEAIRANLS+LLGAD +VVNLKAKTHEKVDSLGENRSIAAHTVVLLMR
Sbjct: 188 TLILQRPKLSPHKEAIRANLSELLGADPAVVNLKAKTHEKVDSLGENRSIAAHTVVLLMR 247

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g00230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ISPF_ARATH7.8e-8681.732-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Arabidop... [more]
ISPF_ORYSJ1.2e-8378.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Oryza sa... [more]
ISPF_CATRO6.2e-8370.822-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharan... [more]
ISPF_CUPMC1.3e-4354.492-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cupriavidus metallidura... [more]
ISPF_THISH1.6e-4352.292-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thioalkalivibrio sulfid... [more]
BLAST of Cp4.1LG01g00230 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWV1_CUCSA5.4e-10283.262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucumis sativus GN=Csa_... [more]
W9SB94_9ROSA1.4e-8975.532-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Morus notabilis GN=L484... [more]
A0A0M3SH19_MORAL1.5e-8873.442-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Morus alba PE=2 SV=1[more]
B9GKD1_POPTR9.9e-8872.052-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Populus trichocarpa GN=... [more]
A0A061G6M7_THECC2.9e-8774.792-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Theobroma cacao GN=TCM_... [more]
BLAST of Cp4.1LG01g00230 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G63970.14.4e-8781.73 isoprenoid F[more]
BLAST of Cp4.1LG01g00230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659102205|ref|XP_008452007.1|1.4e-10384.75PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic ... [more]
gi|449457594|ref|XP_004146533.1|7.8e-10283.26PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic ... [more]
gi|703160811|ref|XP_010112628.1|2.0e-8975.532-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Morus notabilis][more]
gi|720017076|ref|XP_010261353.1|2.0e-8975.72PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic ... [more]
gi|927030530|gb|ALD62475.1|2.2e-8873.442-C-methyl-D-erythritol 2,4- cyclodiphosphate synthase [Morus alba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016114terpenoid biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:00086852-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
Vocabulary: INTERPRO
TermDefinition
IPR020555MECDP_synthase_CS
IPR003526MECDP_synthase
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0016114 terpenoid biosynthetic process
cellular_component GO:0009570 chloroplast stroma
molecular_function GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g00230.1Cp4.1LG01g00230.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0035262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthaseGENE3DG3DSA:3.30.1330.50coord: 78..235
score: 1.0
IPR0035262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthaseHAMAPMF_00107IspFcoord: 80..235
score: 33
IPR0035262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthasePFAMPF02542YgbBcoord: 80..233
score: 1.4
IPR0035262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthaseTIGRFAMsTIGR00151TIGR00151coord: 81..235
score: 2.1
IPR0035262-C-methyl-D-erythritol 2,4-cyclodiphosphate synthaseunknownSSF69765IpsF-likecoord: 79..235
score: 5.89
IPR0205552-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved sitePROSITEPS01350ISPFcoord: 114..129
scor
NoneNo IPR availablePANTHERPTHR32125FAMILY NOT NAMEDcoord: 78..236
score: 3.7

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g00230Cucumber (Gy14) v2cgybcpeB508
Cp4.1LG01g00230Melon (DHL92) v3.6.1cpemedB486
Cp4.1LG01g00230Silver-seed gourdcarcpeB0839
Cp4.1LG01g00230Silver-seed gourdcarcpeB1302
Cp4.1LG01g00230Cucumber (Chinese Long) v3cpecucB0503
Cp4.1LG01g00230Cucumber (Chinese Long) v3cpecucB0538
Cp4.1LG01g00230Wax gourdcpewgoB0510
Cp4.1LG01g00230Cucurbita pepo (Zucchini)cpecpeB206
Cp4.1LG01g00230Cucurbita pepo (Zucchini)cpecpeB233
Cp4.1LG01g00230Cucumber (Gy14) v1cgycpeB0239
Cp4.1LG01g00230Cucurbita maxima (Rimu)cmacpeB324
Cp4.1LG01g00230Cucurbita maxima (Rimu)cmacpeB350
Cp4.1LG01g00230Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g00230Cucurbita moschata (Rifu)cmocpeB287
Cp4.1LG01g00230Cucurbita moschata (Rifu)cmocpeB313
Cp4.1LG01g00230Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g00230Wild cucumber (PI 183967)cpecpiB405
Cp4.1LG01g00230Wild cucumber (PI 183967)cpecpiB431
Cp4.1LG01g00230Cucumber (Chinese Long) v2cpecuB406
Cp4.1LG01g00230Cucumber (Chinese Long) v2cpecuB432
Cp4.1LG01g00230Bottle gourd (USVL1VR-Ls)cpelsiB379
Cp4.1LG01g00230Watermelon (Charleston Gray)cpewcgB405
Cp4.1LG01g00230Watermelon (97103) v1cpewmB408
Cp4.1LG01g00230Melon (DHL92) v3.5.1cpemeB362
Cp4.1LG01g00230Melon (DHL92) v3.5.1cpemeB415