Cp4.1LG00g09400 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG00g09400
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTranscription factor MYB101
LocationCp4.1LG00 : 29160397 .. 29160941 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCATCAAGGCTACACACACAAGCCACTCAACTAGCAAAAGCTCACCTCCTCCAAAATGTATTACAAATTCTAAGCTCTCCTTCTTCTCTAGCCATTTCAAATAACCTCTTCAACACACAACAAATCACAGACCTCCTAACTTATAATCACCCCATTGGATCTTCTTTTCAAACCTTCCCAAGTAACATACAACCCCTACAAGAACCACTATCATGTGACGACTACGCGACAACCACTCCTACGTTAGCGTTGGAAAACGATTGCAATCGAGCGGAGTCTTTTTACGACATGAGTCAATGCCCACACTCACTTCCCGACTTGATTCCAGCTTCTCCCGAATGCTCGAAAATACCAACCGCCATAGAAAATAACTGGGTAGATATCATGGATGACGAAACTTCCAATTCTTACTGGAAACATGCGATAAAGTAAGTGAATACGAATAAAAATCACTCGTTTCATAAGTACTTTAAATTATATCAAAATTACACGATTTTTTTTTTTCTTTGAACAGCCAAACTCCTCCGCCGCCATGGTCGGTCTCG

mRNA sequence

TCATCAAGGCTACACACACAAGCCACTCAACTAGCAAAAGCTCACCTCCTCCAAAATGTATTACAAATTCTAAGCTCTCCTTCTTCTCTAGCCATTTCAAATAACCTCTTCAACACACAACAAATCACAGACCTCCTAACTTATAATCACCCCATTGGATCTTCTTTTCAAACCTTCCCAAGTAACATACAACCCCTACAAGAACCACTATCATGTGACGACTACGCGACAACCACTCCTACGTTAGCGTTGGAAAACGATTGCAATCGAGCGGAGTCTTTTTACGACATGAGTCAATGCCCACACTCACTTCCCGACTTGATTCCAGCTTCTCCCGAATGCTCGAAAATACCAACCGCCATAGAAAATAACTGGGTAGATATCATGGATGACGAAACTTCCAATTCTTACTGGAAACATGCGATAAACCAAACTCCTCCGCCGCCATGGTCGGTCTCG

Coding sequence (CDS)

TCATCAAGGCTACACACACAAGCCACTCAACTAGCAAAAGCTCACCTCCTCCAAAATGTATTACAAATTCTAAGCTCTCCTTCTTCTCTAGCCATTTCAAATAACCTCTTCAACACACAACAAATCACAGACCTCCTAACTTATAATCACCCCATTGGATCTTCTTTTCAAACCTTCCCAAGTAACATACAACCCCTACAAGAACCACTATCATGTGACGACTACGCGACAACCACTCCTACGTTAGCGTTGGAAAACGATTGCAATCGAGCGGAGTCTTTTTACGACATGAGTCAATGCCCACACTCACTTCCCGACTTGATTCCAGCTTCTCCCGAATGCTCGAAAATACCAACCGCCATAGAAAATAACTGGGTAGATATCATGGATGACGAAACTTCCAATTCTTACTGGAAACATGCGATAAACCAAACTCCTCCGCCGCCATGGTCGGTCTCG

Protein sequence

SSRLHTQATQLAKAHLLQNVLQILSSPSSLAISNNLFNTQQITDLLTYNHPIGSSFQTFPSNIQPLQEPLSCDDYATTTPTLALENDCNRAESFYDMSQCPHSLPDLIPASPECSKIPTAIENNWVDIMDDETSNSYWKHAINQTPPPPWSVS
Homology
[Close]
BLAST of Cp4.1LG00g09400 vs. TrEMBL
Match: A0A0A0LND6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G439230 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 5.0e-40
Identity = 97/143 (67.83%), Postives = 110/143 (76.92%), Query Frame = 1 

Query: 3   RLHTQATQLAKAHLLQNVLQILSSPSSLAIS-NNLFNTQQITDLLTYNHPIGSSFQTFPS 62
           RL   ATQLAKA LLQN+LQ+L+S SSL+IS NNLFNTQQI D L YN PIGS FQ  P 
Sbjct: 157 RLQNDATQLAKAQLLQNLLQLLASQSSLSISNNNLFNTQQILD-LNYNLPIGSFFQNIPI 216

Query: 63  NIQPLQEPLSCDDY-ATTTPTLALENDCNRAESFYDMSQCPHSLPDLIPASPECSKIPTA 122
           NI+P Q PLSCDDY A T   L  END +R ++FYDM+Q  +SLP+LIPASPECSKIPTA
Sbjct: 217 NIEPPQGPLSCDDYTAATDGALGFENDNDRIKTFYDMNQRLNSLPNLIPASPECSKIPTA 276

Query: 123 IENNW-VDIMDDETSNSYWKHAI 143
           IENNW  D+MD E S+S WKH I
Sbjct: 277 IENNWDDDLMDVEASDSSWKHVI 298

[Close]
BLAST of Cp4.1LG00g09400 vs. TrEMBL
Match: F6HEE4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0039g01710 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.3e-08
Identity = 54/189 (28.57%), Postives = 81/189 (42.86%), Query Frame = 1 

Query: 3   RLHTQATQLAKAHLLQNVLQIL-SSPSSL---AISNNLFNTQQITDLLTYNHPIGS---- 62
           RL + ATQLAK HLL N+LQ+L +SP++L     + NLF T    D   Y +P  +    
Sbjct: 159 RLQSDATQLAKLHLLHNLLQVLGTSPTALPPNMEAGNLFGTPSFMDHQAYEYPTSNPQLN 218

Query: 63  ------------SFQTFPSNIQPLQEPLSCDDYATTTPTLALENDCNRAESFYDMSQCPH 122
                       +  + PS + P +          +       ND +   S Y       
Sbjct: 219 GLIGLHPTDPAQTLSSIPSFVPPQEPGFEYQTMENSKVCAGNNNDGDELGSLY------- 278

Query: 123 SLPDLIPASPECSKI---------------PTAIENN---WVDIMDDETSNSYWKHAINQ 154
           ++P L+ ASPE S +               P++       W ++MDDE S+SYW+  I+Q
Sbjct: 279 AIPALVSASPEPSTVNQKEKKIEPAHDISNPSSTSTTFEAWGELMDDEASDSYWRDLIDQ 338

[Close]
BLAST of Cp4.1LG00g09400 vs. TrEMBL
Match: A0A0D2TRP4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G348600 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.3e-07
Identity = 58/177 (32.77%), Postives = 78/177 (44.07%), Query Frame = 1 

Query: 2   SRLHTQATQLAKAHLLQNVLQILSSPSSLAISNNLFNTQQITDLLTYNHPIGSSFQTFPS 61
           +RL   A  LAK HLL N+LQIL +P+  A+      T +    L +  P    +Q  PS
Sbjct: 163 NRLQLDAATLAKLHLLHNMLQILGTPAINAMDFLSGPTFRENHQLYHLQPNTGEYQ--PS 222

Query: 62  N-IQPLQEPLSCDDYATTTPTLALENDCNRAESFYDMSQCPHS----LPDLIPASPECSK 121
           N I+  Q      D   ++    + ND   +  F   +  P S    LP LIPASPE   
Sbjct: 223 NLIEASQNTHPLKDLKFSS---YINNDRFASSLFVANNNIPSSSIPQLPALIPASPEHR- 282

Query: 122 IPTAIENN--------------------WVDIMDDETSNSYWKHAINQTPPPPWSVS 154
            P  +ENN                    W D+MDDE S+SYW+  I+Q     W +S
Sbjct: 283 -PAVVENNKINNPNEISNPSSTSTTFEAWGDLMDDEASDSYWRDIIDQASSQSWPIS 332

[Close]
BLAST of Cp4.1LG00g09400 vs. TAIR10
Match: AT3G02940.1 (AT3G02940.1 myb domain protein 107)

HSP 1 Score: 48.1 bits (113), Expect = 5.5e-06
Identity = 43/169 (25.44%), Postives = 71/169 (42.01%), Query Frame = 1 

Query: 1   SSRLHTQATQLAKAHLLQNVLQILSSPSSLA------ISNNLFNTQQ-ITDLLTYNHPIG 60
           +  +   AT +AKA LL +++Q+LS+ ++ +       +NNLF     + +L    +P  
Sbjct: 155 NQNIQLDATSVAKAQLLHSMIQVLSNNNTSSSFDIHHTTNNLFGQSSFLENLPNIENPYD 214

Query: 61  SSFQTFPSNIQPLQEPLSCDDYATTTPTLALENDCNRAESFYDMSQCPHSLPDLIPASPE 120
            +      + QPL      D +++    +A ++D N        S        ++  + E
Sbjct: 215 QTQGLSHIDDQPL------DSFSSPIRVVAYQHDQNFIPPLISTSPDESKETQMMVKNKE 274

Query: 121 CSKIPTAIENN------------WVDIMDDETSNSYWKHAINQTPPPPW 151
             K      N             W DI+DDE S+SYWK  I QT   PW
Sbjct: 275 IMKYNDHTSNPSSTSTFTQDHQPWCDIIDDEASDSYWKEIIEQTCSEPW 317

[Close]
BLAST of Cp4.1LG00g09400 vs. NCBI nr
Match: gi|778673902|ref|XP_011650084.1| (PREDICTED: transcription repressor MYB6-like [Cucumis sativus])

HSP 1 Score: 181.0 bits (458), Expect = 1.5e-42
Identity = 102/149 (68.46%), Postives = 117/149 (78.52%), Query Frame = 1 

Query: 8   ATQLAKAHLLQNVLQILSSPSSLAISNN-LFNTQQITDLLTYNHPIGSSFQTFPSNIQPL 67
           ATQLAKA LLQN+LQ+L+S SSL+ISNN LFNTQQI DL  YN PIGS FQ  P NI+P 
Sbjct: 150 ATQLAKAQLLQNLLQLLASQSSLSISNNNLFNTQQILDL-NYNLPIGSFFQNIPINIEPP 209

Query: 68  QEPLSCDDY-ATTTPTLALENDCNRAESFYDMSQCPHSLPDLIPASPECSKIPTAIENNW 127
           Q PLSCDDY A T   L  END +R ++FYDM+Q  +SLP+LIPASPECSKIPTAIENNW
Sbjct: 210 QGPLSCDDYTAATDGALGFENDNDRIKTFYDMNQRLNSLPNLIPASPECSKIPTAIENNW 269

Query: 128 -VDIMDDETSNSYWKHAINQTPPPPWSVS 154
             D+MD E S+S WKH I+QT PP W+VS
Sbjct: 270 DDDLMDVEASDSSWKHVIDQT-PPSWTVS 296

[Close]
BLAST of Cp4.1LG00g09400 vs. NCBI nr
Match: gi|659118546|ref|XP_008459176.1| (PREDICTED: myb-related protein Hv1-like [Cucumis melo])

HSP 1 Score: 177.2 bits (448), Expect = 2.2e-41
Identity = 98/149 (65.77%), Postives = 115/149 (77.18%), Query Frame = 1 

Query: 8   ATQLAKAHLLQNVLQILSSPSSLAISNN-LFNTQQITDLLTYNHPIGSSFQTFPSNIQPL 67
           ATQLAKA LLQN+LQ+L+S SSL+ISNN +FNTQQI DL  YN PIGS  Q  P NI+P 
Sbjct: 173 ATQLAKAQLLQNLLQLLASQSSLSISNNNVFNTQQILDL-NYNLPIGSFLQNIPINIEPP 232

Query: 68  QEPLSCDDYATTTP-TLALENDCNRAESFYDMSQCPHSLPDLIPASPECSKIPTAIENNW 127
           QEPLSCDDY   T   L  +ND +R ++FYDM+Q  +SLP+LIPASPECSKIPT IENNW
Sbjct: 233 QEPLSCDDYTVGTDGVLGFQNDTDRIKTFYDMNQRLNSLPNLIPASPECSKIPTTIENNW 292

Query: 128 -VDIMDDETSNSYWKHAINQTPPPPWSVS 154
             D+MD E S+S WKH I+QT PP W+VS
Sbjct: 293 EEDLMDVEASDSSWKHVIDQT-PPSWTVS 319

[Close]
BLAST of Cp4.1LG00g09400 vs. NCBI nr
Match: gi|700208296|gb|KGN63415.1| (hypothetical protein Csa_2G439230 [Cucumis sativus])

HSP 1 Score: 172.2 bits (435), Expect = 7.2e-40
Identity = 97/143 (67.83%), Postives = 110/143 (76.92%), Query Frame = 1 

Query: 3   RLHTQATQLAKAHLLQNVLQILSSPSSLAIS-NNLFNTQQITDLLTYNHPIGSSFQTFPS 62
           RL   ATQLAKA LLQN+LQ+L+S SSL+IS NNLFNTQQI D L YN PIGS FQ  P 
Sbjct: 157 RLQNDATQLAKAQLLQNLLQLLASQSSLSISNNNLFNTQQILD-LNYNLPIGSFFQNIPI 216

Query: 63  NIQPLQEPLSCDDY-ATTTPTLALENDCNRAESFYDMSQCPHSLPDLIPASPECSKIPTA 122
           NI+P Q PLSCDDY A T   L  END +R ++FYDM+Q  +SLP+LIPASPECSKIPTA
Sbjct: 217 NIEPPQGPLSCDDYTAATDGALGFENDNDRIKTFYDMNQRLNSLPNLIPASPECSKIPTA 276

Query: 123 IENNW-VDIMDDETSNSYWKHAI 143
           IENNW  D+MD E S+S WKH I
Sbjct: 277 IENNWDDDLMDVEASDSSWKHVI 298

[Close]
BLAST of Cp4.1LG00g09400 vs. NCBI nr
Match: gi|359489983|ref|XP_003634006.1| (PREDICTED: transcription factor MYB39 [Vitis vinifera])

HSP 1 Score: 67.0 bits (162), Expect = 3.2e-08
Identity = 54/189 (28.57%), Postives = 81/189 (42.86%), Query Frame = 1 

Query: 3   RLHTQATQLAKAHLLQNVLQIL-SSPSSL---AISNNLFNTQQITDLLTYNHPIGS---- 62
           RL + ATQLAK HLL N+LQ+L +SP++L     + NLF T    D   Y +P  +    
Sbjct: 159 RLQSDATQLAKLHLLHNLLQVLGTSPTALPPNMEAGNLFGTPSFMDHQAYEYPTSNPQLN 218

Query: 63  ------------SFQTFPSNIQPLQEPLSCDDYATTTPTLALENDCNRAESFYDMSQCPH 122
                       +  + PS + P +          +       ND +   S Y       
Sbjct: 219 GLIGLHPTDPAQTLSSIPSFVPPQEPGFEYQTMENSKVCAGNNNDGDELGSLY------- 278

Query: 123 SLPDLIPASPECSKI---------------PTAIENN---WVDIMDDETSNSYWKHAINQ 154
           ++P L+ ASPE S +               P++       W ++MDDE S+SYW+  I+Q
Sbjct: 279 AIPALVSASPEPSTVNQKEKKIEPAHDISNPSSTSTTFEAWGELMDDEASDSYWRDLIDQ 338

[Close]
BLAST of Cp4.1LG00g09400 vs. NCBI nr
Match: gi|823199168|ref|XP_012434825.1| (PREDICTED: transcription factor MYB39-like isoform X1 [Gossypium raimondii])

HSP 1 Score: 62.0 bits (149), Expect = 1.0e-06
Identity = 58/177 (32.77%), Postives = 78/177 (44.07%), Query Frame = 1 

Query: 2   SRLHTQATQLAKAHLLQNVLQILSSPSSLAISNNLFNTQQITDLLTYNHPIGSSFQTFPS 61
           +RL   A  LAK HLL N+LQIL +P+  A+      T +    L +  P    +Q  PS
Sbjct: 163 NRLQLDAATLAKLHLLHNMLQILGTPAINAMDFLSGPTFRENHQLYHLQPNTGEYQ--PS 222

Query: 62  N-IQPLQEPLSCDDYATTTPTLALENDCNRAESFYDMSQCPHS----LPDLIPASPECSK 121
           N I+  Q      D   ++    + ND   +  F   +  P S    LP LIPASPE   
Sbjct: 223 NLIEASQNTHPLKDLKFSS---YINNDRFASSLFVANNNIPSSSIPQLPALIPASPEHR- 282

Query: 122 IPTAIENN--------------------WVDIMDDETSNSYWKHAINQTPPPPWSVS 154
            P  +ENN                    W D+MDDE S+SYW+  I+Q     W +S
Sbjct: 283 -PAVVENNKINNPNEISNPSSTSTTFEAWGDLMDDEASDSYWRDIIDQASSQSWPIS 332

The following BLAST results are available for this feature:
BLAST of Cp4.1LG00g09400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG00g09400 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LND6_CUCSA5.0e-4067.83Uncharacterized protein OS=Cucumis sativus GN=Csa_2G439230 PE=4 SV=1[more]
F6HEE4_VITVI2.3e-0828.57Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0039g01710 PE=4 SV=... [more]
A0A0D2TRP4_GOSRA7.3e-0732.77Uncharacterized protein OS=Gossypium raimondii GN=B456_007G348600 PE=4 SV=1[more]
BLAST of Cp4.1LG00g09400 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G02940.15.5e-0625.44 myb domain protein 107[more]
BLAST of Cp4.1LG00g09400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778673902|ref|XP_011650084.1|1.5e-4268.46PREDICTED: transcription repressor MYB6-like [Cucumis sativus][more]
gi|659118546|ref|XP_008459176.1|2.2e-4165.77PREDICTED: myb-related protein Hv1-like [Cucumis melo][more]
gi|700208296|gb|KGN63415.1|7.2e-4067.83hypothetical protein Csa_2G439230 [Cucumis sativus][more]
gi|359489983|ref|XP_003634006.1|3.2e-0828.57PREDICTED: transcription factor MYB39 [Vitis vinifera][more]
gi|823199168|ref|XP_012434825.1|1.0e-0632.77PREDICTED: transcription factor MYB39-like isoform X1 [Gossypium raimondii][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG00g09400.1Cp4.1LG00g09400.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG00g09400Cucumber (Chinese Long) v3cpecucB0010
Cp4.1LG00g09400Cucurbita pepo (Zucchini)cpecpeB001