Cp4.1LG00g09070 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG00g09070
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG00 : 28441325 .. 28441923 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAACTCAGCCATCTCCAGAATCTGCACCCAGAAGCAGGTGGATCAAGATCACAGTAGTTGGACTTCCTCCATGGACGACCTCCTCTTATTCGACCACTCTAAAACAATTTCATATCACTTTCAAAACGCCGCCGTCTTTTCTTCCTCCGATGACGACGATCTCCAAGACACTGCAACTTCTCCGCCTCATCCTTCCATAATTTCCGACGTACATTACATTCTCAGCTATATAAATTATCATCCAAAACTTTTGCTTACACTTTTTTTTAAACTGGGTTTTGTGTTTTGAATCAGATGGATGGGCTTAGCTCCAAGCAAAAGAAGCAGCAGCAGCTCAGTGCCATGATCAATCAAACAAAACACAAGGTTTGTAATTTTTTAGTGTTTTTACATTAAAAATCCATTCTTTGATGCAATTTTAACTGTGATTTTGGGGTTTTGATTTTGTAGGGGAAAGAAATTGAGGAATTTGGGGAAGTTGAAGATAGAATTGAAGTGGGTTTTGTGGGGAGGGATAATAATTGTAGCACAGGGCTCAAGAACATTGGCCTTTGCTTGGTTCCTGTATCCATGGCTATCAATTATTTTGGTTAG

mRNA sequence

ATGGAAAACTCAGCCATCTCCAGAATCTGCACCCAGAAGCAGGTGGATCAAGATCACAGTAGTTGGACTTCCTCCATGGACGACCTCCTCTTATTCGACCACTCTAAAACAATTTCATATCACTTTCAAAACGCCGCCGTCTTTTCTTCCTCCGATGACGACGATCTCCAAGACACTGCAACTTCTCCGCCTCATCCTTCCATAATTTCCGACATGGATGGGCTTAGCTCCAAGCAAAAGAAGCAGCAGCAGCTCAGTGCCATGATCAATCAAACAAAACACAAGGGGAAAGAAATTGAGGAATTTGGGGAAGTTGAAGATAGAATTGAAGTGGGTTTTGTGGGGAGGGATAATAATTGTAGCACAGGGCTCAAGAACATTGGCCTTTGCTTGGTTCCTGTATCCATGGCTATCAATTATTTTGGTTAG

Coding sequence (CDS)

ATGGAAAACTCAGCCATCTCCAGAATCTGCACCCAGAAGCAGGTGGATCAAGATCACAGTAGTTGGACTTCCTCCATGGACGACCTCCTCTTATTCGACCACTCTAAAACAATTTCATATCACTTTCAAAACGCCGCCGTCTTTTCTTCCTCCGATGACGACGATCTCCAAGACACTGCAACTTCTCCGCCTCATCCTTCCATAATTTCCGACATGGATGGGCTTAGCTCCAAGCAAAAGAAGCAGCAGCAGCTCAGTGCCATGATCAATCAAACAAAACACAAGGGGAAAGAAATTGAGGAATTTGGGGAAGTTGAAGATAGAATTGAAGTGGGTTTTGTGGGGAGGGATAATAATTGTAGCACAGGGCTCAAGAACATTGGCCTTTGCTTGGTTCCTGTATCCATGGCTATCAATTATTTTGGTTAG

Protein sequence

MENSAISRICTQKQVDQDHSSWTSSMDDLLLFDHSKTISYHFQNAAVFSSSDDDDLQDTATSPPHPSIISDMDGLSSKQKKQQQLSAMINQTKHKGKEIEEFGEVEDRIEVGFVGRDNNCSTGLKNIGLCLVPVSMAINYFG
Homology
[Close]
BLAST of Cp4.1LG00g09070 vs. TrEMBL
Match: A0A0A0L2F7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G078270 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.7e-34
Identity = 100/177 (56.50%), Postives = 117/177 (66.10%), Query Frame = 1 

Query: 1   MENSAISRICTQKQVD------QDHSSWT--SSMDDLLLFDHSKTI---SYH-FQNAAVF 60
           MENSA SRIC+ ++ D       +  SW+  SSMDDLL+FD   T    SY  FQ +   
Sbjct: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCC 60

Query: 61  SSS--------------------DDDDLQDTATSPPHPSIISDMDGLSSKQKKQQQLSAM 120
           SS+                     DDDL+DTATSPPHPSI+S MD  SSKQ+K+Q+  AM
Sbjct: 61  SSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQR--AM 120

Query: 121 INQTKHKGKEIEEFGEVEDRI-EVGFVGRDNN---CSTGLKNIGLCLVPVSMAINYF 142
           +NQTKHKG   E++GEVEDRI EVGFVGRDNN   CSTGLKNIGLCLVPVSMA+NYF
Sbjct: 121 MNQTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYF 175

[Close]
BLAST of Cp4.1LG00g09070 vs. TrEMBL
Match: B9SA47_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0185030 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-06
Identity = 42/115 (36.52%), Postives = 67/115 (58.26%), Query Frame = 1 

Query: 30  LLFDHSKTIS-YHFQNAAVFSSSDDDDLQDTATSPPHPSIISDMDGLSSKQKKQQQLSAM 89
           L  D++K+ S   F+      +  DD L+DTA+SP +   + D+    +K  KQ+ +   
Sbjct: 94  LPIDNNKSYSRLSFKKRKTKGALVDDSLEDTASSPVNSPKVYDIMNQFNKSIKQRDMDV- 153

Query: 90  INQTKHKGKEIEEFGEV-EDRIEVGFVGRDNNCSTGLKNIGLCLVPVSMAINYFG 143
              ++ KG  I    ++ +DR  +GF+GR+++ +T LK  GLCLVPVSM +NYFG
Sbjct: 154 ---SQDKGNNITSSDQLLDDRSNLGFLGRESD-NTELKKRGLCLVPVSMVVNYFG 203

[Close]
BLAST of Cp4.1LG00g09070 vs. NCBI nr
Match: gi|700201012|gb|KGN56145.1| (hypothetical protein Csa_3G078270 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 2.4e-34
Identity = 100/177 (56.50%), Postives = 117/177 (66.10%), Query Frame = 1 

Query: 1   MENSAISRICTQKQVD------QDHSSWT--SSMDDLLLFDHSKTI---SYH-FQNAAVF 60
           MENSA SRIC+ ++ D       +  SW+  SSMDDLL+FD   T    SY  FQ +   
Sbjct: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCC 60

Query: 61  SSS--------------------DDDDLQDTATSPPHPSIISDMDGLSSKQKKQQQLSAM 120
           SS+                     DDDL+DTATSPPHPSI+S MD  SSKQ+K+Q+  AM
Sbjct: 61  SSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQR--AM 120

Query: 121 INQTKHKGKEIEEFGEVEDRI-EVGFVGRDNN---CSTGLKNIGLCLVPVSMAINYF 142
           +NQTKHKG   E++GEVEDRI EVGFVGRDNN   CSTGLKNIGLCLVPVSMA+NYF
Sbjct: 121 MNQTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYF 175

[Close]
BLAST of Cp4.1LG00g09070 vs. NCBI nr
Match: gi|659126934|ref|XP_008463437.1| (PREDICTED: uncharacterized protein LOC103501601 [Cucumis melo])

HSP 1 Score: 141.0 bits (354), Expect = 1.6e-30
Identity = 95/177 (53.67%), Postives = 111/177 (62.71%), Query Frame = 1 

Query: 1   MENSAISRICTQKQVDQ------DHSSWT--SSMDDLLL--------------FDHSKTI 60
           MENSA SRIC+  + D+      +  SW+  SSMDDLL+              F      
Sbjct: 1   MENSANSRICSHGEEDRCEATFHEDPSWSTSSSMDDLLMFDVRSTIHSSSYEFFQTRLCC 60

Query: 61  SYHFQNAAVFSSSD----------DDDLQDTATSPPHPSIISDMDGLSSKQKKQQQLSAM 120
           S      A  S+S           DDDL+DTATSPPHPSI+S MD  SSKQ+K+Q+  A 
Sbjct: 61  SSAVDGGAQASASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDEPSSKQQKKQR--AT 120

Query: 121 INQTKHKGKEIEEFGEVEDR-IEVGFVGRDNN---CSTGLKNIGLCLVPVSMAINYF 142
           INQTKHKGK  E++GEVEDR I+VG VGRDNN   CSTGLKNIGLCLVPVSMA+NYF
Sbjct: 121 INQTKHKGKGSEDYGEVEDRIIQVGVVGRDNNKNYCSTGLKNIGLCLVPVSMALNYF 175

[Close]
BLAST of Cp4.1LG00g09070 vs. NCBI nr
Match: gi|778688383|ref|XP_011652737.1| (PREDICTED: uncharacterized protein LOC105435073 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 2.8e-30
Identity = 89/149 (59.73%), Postives = 102/149 (68.46%), Query Frame = 1 

Query: 21  SWTSSMDDLLLFDHSKTI---SYH-FQNAAVFSSS--------------------DDDDL 80
           S +SSMDDLL+FD   T    SY  FQ +   SS+                     DDDL
Sbjct: 9   STSSSMDDLLMFDVRTTTHSSSYESFQTSLCCSSAVDGGAQPSASSFRLKRRKMAADDDL 68

Query: 81  QDTATSPPHPSIISDMDGLSSKQKKQQQLSAMINQTKHKGKEIEEFGEVEDRI-EVGFVG 140
           +DTATSPPHPSI+S MD  SSKQ+K+Q+  AM+NQTKHKG   E++GEVEDRI EVGFVG
Sbjct: 69  EDTATSPPHPSIVSKMDERSSKQQKKQR--AMMNQTKHKGNGSEDYGEVEDRITEVGFVG 128

Query: 141 RDNN---CSTGLKNIGLCLVPVSMAINYF 142
           RDNN   CSTGLKNIGLCLVPVSMA+NYF
Sbjct: 129 RDNNKNHCSTGLKNIGLCLVPVSMALNYF 155

[Close]
BLAST of Cp4.1LG00g09070 vs. NCBI nr
Match: gi|255563729|ref|XP_002522866.1| (PREDICTED: uncharacterized protein LOC8280744 [Ricinus communis])

HSP 1 Score: 60.5 bits (145), Expect = 2.8e-06
Identity = 42/115 (36.52%), Postives = 67/115 (58.26%), Query Frame = 1 

Query: 30  LLFDHSKTIS-YHFQNAAVFSSSDDDDLQDTATSPPHPSIISDMDGLSSKQKKQQQLSAM 89
           L  D++K+ S   F+      +  DD L+DTA+SP +   + D+    +K  KQ+ +   
Sbjct: 94  LPIDNNKSYSRLSFKKRKTKGALVDDSLEDTASSPVNSPKVYDIMNQFNKSIKQRDMDV- 153

Query: 90  INQTKHKGKEIEEFGEV-EDRIEVGFVGRDNNCSTGLKNIGLCLVPVSMAINYFG 143
              ++ KG  I    ++ +DR  +GF+GR+++ +T LK  GLCLVPVSM +NYFG
Sbjct: 154 ---SQDKGNNITSSDQLLDDRSNLGFLGRESD-NTELKKRGLCLVPVSMVVNYFG 203

The following BLAST results are available for this feature:
BLAST of Cp4.1LG00g09070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG00g09070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2F7_CUCSA1.7e-3456.50Uncharacterized protein OS=Cucumis sativus GN=Csa_3G078270 PE=4 SV=1[more]
B9SA47_RICCO2.0e-0636.52Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0185030 PE=4 SV=1[more]
BLAST of Cp4.1LG00g09070 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG00g09070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201012|gb|KGN56145.1|2.4e-3456.50hypothetical protein Csa_3G078270 [Cucumis sativus][more]
gi|659126934|ref|XP_008463437.1|1.6e-3053.67PREDICTED: uncharacterized protein LOC103501601 [Cucumis melo][more]
gi|778688383|ref|XP_011652737.1|2.8e-3059.73PREDICTED: uncharacterized protein LOC105435073 [Cucumis sativus][more]
gi|255563729|ref|XP_002522866.1|2.8e-0636.52PREDICTED: uncharacterized protein LOC8280744 [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG00g09070.1Cp4.1LG00g09070.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33974FAMILY NOT NAMEDcoord: 51..142
score: 2.0
NoneNo IPR availablePANTHERPTHR33974:SF2GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MSD21coord: 51..142
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG00g09070Cucurbita pepo (Zucchini)cpecpeB001
Cp4.1LG00g09070Cucumber (Chinese Long) v3cpecucB0010