Cp4.1LG00g08890 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG00g08890
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionSuperoxide dismutase [Cu-Zn]
LocationCp4.1LG00 : 28028303 .. 28029262 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGTGCGAAATGGGCGCTCTCAAAGCCGTGGCGCTCATCACAGGAGGTGATCATTCCAACGTCAAAGGCTCCATTCAGTTCGTCCAAGATTCAAATGGTCTGTTTCTCTATGTGGGTTTTTGAATTCGATGCTTGTTTTTGGTTCTTCTGCGCCCATTTTTCATAGGGTTTTTGTAATCGATGCTTGTTTTTTGTTCTTCTGCGCCCATTTTTCATAGGGTTTTTGTAATCGTTGCTTGTTTTTGCTTCTTCTGCGCCCATTTTTCGAAGGGTTTTGTCTGCGATGATTGTTCTTGCTTGTTTTTGCACTTATTTCTGAAAGGATTTTGTGTGCGATGCTTGTTTTTGCTTCTTTTGCGCTCATTTCTTGTAGGGTTTTTGATAAACATGAACAGGTGCGACCCATGTTAATGGTAGATTAAGTGGGCTATCTCCTGGACTCCATGGCTTCCATATCCACGCTCTTGGAGATACCACAAATGGCTGCAACTCCACTGGTAATCCCTCTCTTTTTCTGCCCTAATTTCGCCTCGTTCCATTGGTTGAATCGATTTTTTCTTTGTTAGGGCCTCATTTTAATCCATTGAAGAAGAACCATGGAGCTCCTGGGGATTCAGAACGTCACGCTGGAGATCTGGGGAACATCTATGCAGGCCCTGATGGTTAGTAGAGTTTCTACTTTTTTTTTCCATTGGAATGTTCTTGAGCTCCTCGTATGACATTTTAGCTGTGGGATGTTTTAGGGGTTGCTGAAGTTTCCATTACAGATAGGCTGGTAAGTTTGCTAATCCTTATAGACTGCTTCTTATTCAGTGAGTTGTGCTTATGTGAGCCACTGTTGGGCTTCTAATTTGCATTTGTTCTTTGTGATGTGAGTTGTGGATTATATTTTCGTTGTTGTTCTTGTGTTTTGATGTGTAGATTTCACTTAAGGGACCTCATTCGATACTTGGACGGGCA

mRNA sequence

ACGTGCGAAATGGGCGCTCTCAAAGCCGTGGCGCTCATCACAGGAGGTGATCATTCCAACGTCAAAGGCTCCATTCAGTTCGTCCAAGATTCAAATGGTGCGACCCATGTTAATGGTAGATTAAGTGGGCTATCTCCTGGACTCCATGGCTTCCATATCCACGCTCTTGGAGATACCACAAATGGCTGCAACTCCACTGGGCCTCATTTTAATCCATTGAAGAAGAACCATGGAGCTCCTGGGGATTCAGAACGTCACGCTGGAGATCTGGGGAACATCTATGCAGGCCCTGATGGGGTTGCTGAAGTTTCCATTACAGATAGGCTGATTTCACTTAAGGGACCTCATTCGATACTTGGACGGGCA

Coding sequence (CDS)

ACGTGCGAAATGGGCGCTCTCAAAGCCGTGGCGCTCATCACAGGAGGTGATCATTCCAACGTCAAAGGCTCCATTCAGTTCGTCCAAGATTCAAATGGTGCGACCCATGTTAATGGTAGATTAAGTGGGCTATCTCCTGGACTCCATGGCTTCCATATCCACGCTCTTGGAGATACCACAAATGGCTGCAACTCCACTGGGCCTCATTTTAATCCATTGAAGAAGAACCATGGAGCTCCTGGGGATTCAGAACGTCACGCTGGAGATCTGGGGAACATCTATGCAGGCCCTGATGGGGTTGCTGAAGTTTCCATTACAGATAGGCTGATTTCACTTAAGGGACCTCATTCGATACTTGGACGGGCA

Protein sequence

TCEMGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGCNSTGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRA
Homology
[Close]
BLAST of Cp4.1LG00g08890 vs. Swiss-Prot
Match: SODC2_MESCR (Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum GN=SODCC.2 PE=2 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.3e-47
Identity = 90/119 (75.63%), Postives = 103/119 (86.55%), Query Frame = 1 

Query: 4   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 63
           MG +KAVA+I G  ++NVKGS+QF+QDS G THV GR++GL+PGLHGFHIHALGDTTNGC
Sbjct: 1   MGVIKAVAVING--NNNVKGSLQFIQDSTGVTHVKGRITGLTPGLHGFHIHALGDTTNGC 60

Query: 64  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRA 123
           NSTGPHFNPLKK+HGAP D+ERHAGDLGN+ AG DGVAEVS+ D  I L G HSILGRA
Sbjct: 61  NSTGPHFNPLKKDHGAPFDTERHAGDLGNVVAGADGVAEVSVRDTQIPLSGQHSILGRA 117

[Close]
BLAST of Cp4.1LG00g08890 vs. Swiss-Prot
Match: SODC_PINSY (Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris GN=SODCC PE=2 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.6e-40
Identity = 79/119 (66.39%), Postives = 91/119 (76.47%), Query Frame = 1 

Query: 4   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 63
           MG LKAV ++ G   ++VKG +QF Q+ +G T V G++SGLSPGLHGFH+HALGDTTNGC
Sbjct: 1   MGLLKAVVVLNGA--ADVKGVVQFTQEGDGPTTVTGKISGLSPGLHGFHVHALGDTTNGC 60

Query: 64  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRA 123
            STGPHFNPL K HGAP D  RHAGDLGN+  G DG  E SITD  I L GPHSI+GRA
Sbjct: 61  MSTGPHFNPLGKEHGAPTDDNRHAGDLGNVTVGTDGTVEFSITDSQIPLSGPHSIVGRA 117

[Close]
BLAST of Cp4.1LG00g08890 vs. Swiss-Prot
Match: SODC3_ARATH (Superoxide dismutase [Cu-Zn] 3 OS=Arabidopsis thaliana GN=CSD3 PE=1 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.7e-39
Identity = 79/118 (66.95%), Postives = 93/118 (78.81%), Query Frame = 1 

Query: 5   GALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGCN 64
           G L+AVALI G +  NV+G +QFVQD +G THV G++SGLSPG HGFHIH+ GDTTNGC 
Sbjct: 6   GNLRAVALIAGDN--NVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCI 65

Query: 65  STGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRA 123
           STGPHFNPL + HG P + ERHAGDLGNI AG +GVAE+ I D+ I L G +SILGRA
Sbjct: 66  STGPHFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRA 121

[Close]
BLAST of Cp4.1LG00g08890 vs. Swiss-Prot
Match: SODC2_MAIZE (Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 159.8 bits (403), Expect = 1.8e-38
Identity = 77/116 (66.38%), Postives = 90/116 (77.59%), Query Frame = 1 

Query: 7   LKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGCNST 66
           +KAVA++ G D   VKG+I F Q+ +G T V G +SGL PGLHGFH+HALGDTTNGC ST
Sbjct: 2   VKAVAVLAGTD---VKGTIFFSQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMST 61

Query: 67  GPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRA 123
           GPHFNP+ K HGAP D +RHAGDLGN+ AG DGV  V+ITD  I L GPHSI+GRA
Sbjct: 62  GPHFNPVGKEHGAPEDEDRHAGDLGNVTAGEDGVVNVNITDSQIPLAGPHSIIGRA 114

[Close]
BLAST of Cp4.1LG00g08890 vs. Swiss-Prot
Match: ALL5B_OLEEU (Superoxide dismutase [Cu-Zn] 2 OS=Olea europaea GN=OLE5 PE=1 SV=2)

HSP 1 Score: 155.2 bits (391), Expect = 4.5e-37
Identity = 72/116 (62.07%), Postives = 86/116 (74.14%), Query Frame = 1 

Query: 7   LKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGCNST 66
           +KAV ++   +   V G++ F Q+ +G T V G LSGL PGLHGFH+HALGDTTNGC ST
Sbjct: 2   VKAVTVLNSSE--GVTGTVYFTQEGDGPTTVTGNLSGLKPGLHGFHVHALGDTTNGCMST 61

Query: 67  GPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRA 123
           GPHFNP+ K HGAPGD  RHAGDLGNI  G DG A ++I D+ I L GPHSI+GRA
Sbjct: 62  GPHFNPVGKEHGAPGDENRHAGDLGNITVGEDGTAAINIVDKQIPLTGPHSIIGRA 115

[Close]
BLAST of Cp4.1LG00g08890 vs. TrEMBL
Match: A0A0A0KZZ1_CUCSA (Superoxide dismutase [Cu-Zn] OS=Cucumis sativus GN=Csa_4G192040 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 4.0e-56
Identity = 107/119 (89.92%), Postives = 115/119 (96.64%), Query Frame = 1 

Query: 4   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 63
           MGALKAV LI GGD SNV+G+IQFVQDSNGATHVNGR+SGLSPGLHGFHIHALGDTTNGC
Sbjct: 1   MGALKAVVLIAGGD-SNVRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGC 60

Query: 64  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRA 123
           NSTGPHFNPLKK+HG+PGDSERH GDLGNIYAGPDGVAEVSI+DRLISLKGPHS++GRA
Sbjct: 61  NSTGPHFNPLKKDHGSPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSVIGRA 118

[Close]
BLAST of Cp4.1LG00g08890 vs. TrEMBL
Match: A0A023PRR8_BETPL (CuZn superoxide dismutase (Fragment) OS=Betula platyphylla PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.3e-48
Identity = 93/119 (78.15%), Postives = 107/119 (89.92%), Query Frame = 1 

Query: 4   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 63
           MGA KAV LI+G  +SN++GS+QF+++ NGATHV GR++GLSPGLHGFHIHA GDTTNGC
Sbjct: 1   MGAPKAVVLISG--NSNIRGSVQFIEEPNGATHVKGRITGLSPGLHGFHIHAFGDTTNGC 60

Query: 64  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRA 123
           NSTGPHFNPLKK+HGAP D ERHAGDLGNI+AGPDGVAE+SITD+ I L GPHSILGRA
Sbjct: 61  NSTGPHFNPLKKDHGAPTDKERHAGDLGNIFAGPDGVAEISITDKQILLTGPHSILGRA 117

[Close]
BLAST of Cp4.1LG00g08890 vs. TrEMBL
Match: A0A0H4CUN7_BETPL (Superoxide dismutase [Cu-Zn] OS=Betula platyphylla GN=SOD2 PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.0e-47
Identity = 91/119 (76.47%), Postives = 105/119 (88.24%), Query Frame = 1 

Query: 4   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 63
           MGA KAV LI+G  +SN++GS+QF+++ NGATHV GR++GLSPG HGFHIHA GDTTNGC
Sbjct: 1   MGAPKAVVLISG--NSNIRGSVQFIEEPNGATHVKGRITGLSPGFHGFHIHAFGDTTNGC 60

Query: 64  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRA 123
           NSTGPHFNPLKK+HG P D ERHAGDLGNI+AGPDGVAE+SITD+ I L GPHSILGRA
Sbjct: 61  NSTGPHFNPLKKDHGGPTDKERHAGDLGNIFAGPDGVAEISITDKQILLTGPHSILGRA 117

[Close]
BLAST of Cp4.1LG00g08890 vs. TrEMBL
Match: A0A059DI16_EUCGR (Superoxide dismutase [Cu-Zn] OS=Eucalyptus grandis GN=EUGRSUZ_A02107 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.8e-46
Identity = 95/119 (79.83%), Postives = 102/119 (85.71%), Query Frame = 1 

Query: 4   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 63
           M  +KAVALI G   ++V+GS+QF+Q  NGATHV GR+SGLSPGLHGFHIHALGDTTNGC
Sbjct: 1   MSGVKAVALIIGD--ASVRGSLQFLQQPNGATHVKGRISGLSPGLHGFHIHALGDTTNGC 60

Query: 64  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRA 123
           NSTGPHFNPLKKNHGAP DSERHAGDLGNI AGPDGVAEVSI D  I L G HSILGRA
Sbjct: 61  NSTGPHFNPLKKNHGAPADSERHAGDLGNIVAGPDGVAEVSIVDVQIPLTGQHSILGRA 117

[Close]
BLAST of Cp4.1LG00g08890 vs. TrEMBL
Match: B9IPR0_POPTR (Superoxide dismutase [Cu-Zn] OS=Populus trichocarpa GN=POPTR_0019s05140g PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 4.8e-46
Identity = 94/118 (79.66%), Postives = 104/118 (88.14%), Query Frame = 1 

Query: 5   GALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGCN 64
           G++KAVALITG   SNV+GS+ F+Q+ NGATHV GR++GLSPGLHGFHIHALGDTTNGCN
Sbjct: 4   GSVKAVALITGD--SNVRGSLHFIQEPNGATHVTGRIAGLSPGLHGFHIHALGDTTNGCN 63

Query: 65  STGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRA 123
           STGPHFNPLKK+HGAP D+ERHAGDLGNI AG DGVAEVSITD  I L G HSILGRA
Sbjct: 64  STGPHFNPLKKDHGAPCDNERHAGDLGNIIAGSDGVAEVSITDFQIPLSGMHSILGRA 119

[Close]
BLAST of Cp4.1LG00g08890 vs. TAIR10
Match: AT5G18100.1 (AT5G18100.1 copper/zinc superoxide dismutase 3)

HSP 1 Score: 163.3 bits (412), Expect = 9.3e-41
Identity = 79/118 (66.95%), Postives = 93/118 (78.81%), Query Frame = 1 

Query: 5   GALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGCN 64
           G L+AVALI G +  NV+G +QFVQD +G THV G++SGLSPG HGFHIH+ GDTTNGC 
Sbjct: 6   GNLRAVALIAGDN--NVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCI 65

Query: 65  STGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRA 123
           STGPHFNPL + HG P + ERHAGDLGNI AG +GVAE+ I D+ I L G +SILGRA
Sbjct: 66  STGPHFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRA 121

[Close]
BLAST of Cp4.1LG00g08890 vs. TAIR10
Match: AT1G08830.1 (AT1G08830.1 copper/zinc superoxide dismutase 1)

HSP 1 Score: 144.4 bits (363), Expect = 4.5e-35
Identity = 71/115 (61.74%), Postives = 84/115 (73.04%), Query Frame = 1 

Query: 8   KAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGCNSTG 67
           K VA++   +   V G+I F Q+ +G T V+G +SGL PGLHGFH+HALGDTTNGC STG
Sbjct: 3   KGVAVLNSSE--GVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 62

Query: 68  PHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRA 123
           PHFNP  K HGAP D+ RHAGDLGNI  G DG A  +ITD  I L GP+SI+GRA
Sbjct: 63  PHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRA 115

[Close]
BLAST of Cp4.1LG00g08890 vs. TAIR10
Match: AT2G28190.1 (AT2G28190.1 copper/zinc superoxide dismutase 2)

HSP 1 Score: 141.0 bits (354), Expect = 5.0e-34
Identity = 71/122 (58.20%), Postives = 85/122 (69.67%), Query Frame = 1 

Query: 1   TCEMGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTT 60
           T    A KAVA++ G   S+V+G +   QD +G T VN R++GL+PG HGFH+H  GDTT
Sbjct: 59  TVVSAAKKAVAVLKGT--SDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTT 118

Query: 61  NGCNSTGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILG 120
           NGC STGPHFNP    HGAP D  RHAGDLGNI A  DGVAE +I D  I L GP+S++G
Sbjct: 119 NGCISTGPHFNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVG 178

Query: 121 RA 123
           RA
Sbjct: 179 RA 178

[Close]
BLAST of Cp4.1LG00g08890 vs. NCBI nr
Match: gi|449459610|ref|XP_004147539.1| (PREDICTED: superoxide dismutase [Cu-Zn])

HSP 1 Score: 225.3 bits (573), Expect = 5.7e-56
Identity = 107/119 (89.92%), Postives = 115/119 (96.64%), Query Frame = 1 

Query: 4   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 63
           MGALKAV LI GGD SNV+G+IQFVQDSNGATHVNGR+SGLSPGLHGFHIHALGDTTNGC
Sbjct: 1   MGALKAVVLIAGGD-SNVRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGC 60

Query: 64  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRA 123
           NSTGPHFNPLKK+HG+PGDSERH GDLGNIYAGPDGVAEVSI+DRLISLKGPHS++GRA
Sbjct: 61  NSTGPHFNPLKKDHGSPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSVIGRA 118

[Close]
BLAST of Cp4.1LG00g08890 vs. NCBI nr
Match: gi|659082705|ref|XP_008441989.1| (PREDICTED: superoxide dismutase [Cu-Zn])

HSP 1 Score: 222.6 bits (566), Expect = 3.7e-55
Identity = 106/119 (89.08%), Postives = 113/119 (94.96%), Query Frame = 1 

Query: 4   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 63
           M ALKAV LI GGD SN++G+IQFVQDSNGATHVNGR+SGLSPGLHGFHIHALGDTTNGC
Sbjct: 1   MSALKAVVLIAGGD-SNIRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGC 60

Query: 64  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRA 123
           NSTGPHFNPLKK+HG PGDSERH GDLGNIYAGPDGVAEVSI+DRLISLKGPHSI+GRA
Sbjct: 61  NSTGPHFNPLKKDHGGPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSIIGRA 118

[Close]
BLAST of Cp4.1LG00g08890 vs. NCBI nr
Match: gi|614119714|gb|AHX36945.1| (CuZn superoxide dismutase, partial [Betula platyphylla])

HSP 1 Score: 199.5 bits (506), Expect = 3.3e-48
Identity = 93/119 (78.15%), Postives = 107/119 (89.92%), Query Frame = 1 

Query: 4   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 63
           MGA KAV LI+G  +SN++GS+QF+++ NGATHV GR++GLSPGLHGFHIHA GDTTNGC
Sbjct: 1   MGAPKAVVLISG--NSNIRGSVQFIEEPNGATHVKGRITGLSPGLHGFHIHAFGDTTNGC 60

Query: 64  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRA 123
           NSTGPHFNPLKK+HGAP D ERHAGDLGNI+AGPDGVAE+SITD+ I L GPHSILGRA
Sbjct: 61  NSTGPHFNPLKKDHGAPTDKERHAGDLGNIFAGPDGVAEISITDKQILLTGPHSILGRA 117

[Close]
BLAST of Cp4.1LG00g08890 vs. NCBI nr
Match: gi|1009162302|ref|XP_015899366.1| (PREDICTED: superoxide dismutase [Cu-Zn])

HSP 1 Score: 197.2 bits (500), Expect = 1.7e-47
Identity = 95/119 (79.83%), Postives = 104/119 (87.39%), Query Frame = 1 

Query: 4   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 63
           M  LKAVALI G   S +KGS+QF+Q+ NGATHV+GR+SGLSPGLHGFHIHALGDTTNGC
Sbjct: 1   MSTLKAVALIIGD--SGLKGSVQFLQEPNGATHVSGRISGLSPGLHGFHIHALGDTTNGC 60

Query: 64  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRA 123
           NSTGPHFNPLK NHGAP D ERHAGDLGNI+AG DGVAE+SI+DR I L GPHSILGRA
Sbjct: 61  NSTGPHFNPLKMNHGAPSDKERHAGDLGNIFAGSDGVAEISISDRQIPLSGPHSILGRA 117

[Close]
BLAST of Cp4.1LG00g08890 vs. NCBI nr
Match: gi|854930119|gb|AKN79287.1| (superoxide dismutase 2 [Betula platyphylla])

HSP 1 Score: 196.4 bits (498), Expect = 2.8e-47
Identity = 91/119 (76.47%), Postives = 105/119 (88.24%), Query Frame = 1 

Query: 4   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 63
           MGA KAV LI+G  +SN++GS+QF+++ NGATHV GR++GLSPG HGFHIHA GDTTNGC
Sbjct: 1   MGAPKAVVLISG--NSNIRGSVQFIEEPNGATHVKGRITGLSPGFHGFHIHAFGDTTNGC 60

Query: 64  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRA 123
           NSTGPHFNPLKK+HG P D ERHAGDLGNI+AGPDGVAE+SITD+ I L GPHSILGRA
Sbjct: 61  NSTGPHFNPLKKDHGGPTDKERHAGDLGNIFAGPDGVAEISITDKQILLTGPHSILGRA 117

The following BLAST results are available for this feature:
BLAST of Cp4.1LG00g08890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SODC2_MESCR1.3e-4775.63Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum GN=SODCC.2 PE=2 ... [more]
SODC_PINSY2.6e-4066.39Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris GN=SODCC PE=2 SV=1[more]
SODC3_ARATH1.7e-3966.95Superoxide dismutase [Cu-Zn] 3 OS=Arabidopsis thaliana GN=CSD3 PE=1 SV=1[more]
SODC2_MAIZE1.8e-3866.38Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODCC.1 PE=2 SV=2[more]
ALL5B_OLEEU4.5e-3762.07Superoxide dismutase [Cu-Zn] 2 OS=Olea europaea GN=OLE5 PE=1 SV=2[more]
BLAST of Cp4.1LG00g08890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZZ1_CUCSA4.0e-5689.92Superoxide dismutase [Cu-Zn] OS=Cucumis sativus GN=Csa_4G192040 PE=3 SV=1[more]
A0A023PRR8_BETPL2.3e-4878.15CuZn superoxide dismutase (Fragment) OS=Betula platyphylla PE=2 SV=1[more]
A0A0H4CUN7_BETPL2.0e-4776.47Superoxide dismutase [Cu-Zn] OS=Betula platyphylla GN=SOD2 PE=2 SV=1[more]
A0A059DI16_EUCGR2.8e-4679.83Superoxide dismutase [Cu-Zn] OS=Eucalyptus grandis GN=EUGRSUZ_A02107 PE=3 SV=1[more]
B9IPR0_POPTR4.8e-4679.66Superoxide dismutase [Cu-Zn] OS=Populus trichocarpa GN=POPTR_0019s05140g PE=3 SV... [more]
BLAST of Cp4.1LG00g08890 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G18100.19.3e-4166.95 copper/zinc superoxide dismutase 3[more]
AT1G08830.14.5e-3561.74 copper/zinc superoxide dismutase 1[more]
AT2G28190.15.0e-3458.20 copper/zinc superoxide dismutase 2[more]
BLAST of Cp4.1LG00g08890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449459610|ref|XP_004147539.1|5.7e-5689.92PREDICTED: superoxide dismutase [Cu-Zn][more]
gi|659082705|ref|XP_008441989.1|3.7e-5589.08PREDICTED: superoxide dismutase [Cu-Zn][more]
gi|614119714|gb|AHX36945.1|3.3e-4878.15CuZn superoxide dismutase, partial [Betula platyphylla][more]
gi|1009162302|ref|XP_015899366.1|1.7e-4779.83PREDICTED: superoxide dismutase [Cu-Zn][more]
gi|854930119|gb|AKN79287.1|2.8e-4776.47superoxide dismutase 2 [Betula platyphylla][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004784superoxide dismutase activity
GO:0046872metal ion binding
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0006801superoxide metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR024134SOD_Cu/Zn_/chaperone
IPR018152SOD_Cu/Zn_BS
IPR001424SOD_Cu_Zn_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0019430 removal of superoxide radicals
biological_process GO:0006801 superoxide metabolic process
cellular_component GO:0005777 peroxisome
cellular_component GO:0005773 vacuole
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004784 superoxide dismutase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG00g08890.1Cp4.1LG00g08890.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001424Superoxide dismutase, copper/zinc binding domainPRINTSPR00068CUZNDISMTASEcoord: 50..72
score: 2.8E-24coord: 105..122
score: 2.8E-24coord: 86..95
score: 2.8
IPR001424Superoxide dismutase, copper/zinc binding domainGENE3DG3DSA:2.60.40.200coord: 14..122
score: 8.9
IPR001424Superoxide dismutase, copper/zinc binding domainPFAMPF00080Sod_Cucoord: 16..122
score: 3.0
IPR001424Superoxide dismutase, copper/zinc binding domainunknownSSF49329Cu,Zn superoxide dismutase-likecoord: 11..122
score: 6.81
IPR018152Superoxide dismutase, copper/zinc, binding sitePROSITEPS00087SOD_CU_ZN_1coord: 50..60
scor
IPR024134Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperonePANTHERPTHR10003SUPEROXIDE DISMUTASE CU-ZN -RELATEDcoord: 4..122
score: 1.5
NoneNo IPR availablePANTHERPTHR10003:SF31SUPEROXIDE DISMUTASE [CU-ZN] 3coord: 4..122
score: 1.5

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG00g08890Cp4.1LG11g09200Cucurbita pepo (Zucchini)cpecpeB001
The following block(s) are covering this gene:

None