Cp4.1LG00g08810 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG00g08810
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RNA binding protein
Location	Cp4.1LG00 : 27773548 .. 27775781 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATGAAATATAATGTTCTCTACCACCCTCATTTTTGTAAATAATAAATTTCTGTTGTGAGCTTGTTGTCACGTACCTTGATTTCTTCTTTTATCTGTAGGTTGTTGAAAATATTGCTAGAAAATATGGTGTTAGTAAGGGTGAGTTATTGGACCGGGAGTCTGATGACCTTGCTGTACGAGTTGCTTTGGGTGAAACTCAAGTAGTTGCAGAGACAAAGAAGGCTCTCACAAATGCTGGAATAAATGTTGCATCTTTAGAGGAATTTGCTTCTGGTAAAGTTGATGGACACAAAAGGAGCAATCATATTCTTCTTGTGAAAAACTTGCCTTATGGTTCTTCTGAAGGAGAACTTGCAAATATGTTTGGGAAATTTGGGAGTCTGGACAAGATCATTCTTCCACCAACAAAGATATTGGCTTTGGTAATTCTTGCTGAATATATATATATATATACATACATATTTATAAGTTAATATATCATAGACTTGATTATTTCTCTAAACACCTACGTGATTAATCTTACAATAAACGATTTCATCTACGCCCACCAATTATAATTTATTCACGATTGACTTTTTATCAGCTGGATTGATTAAAGCACCATTCAGTATTGGTGGCTCCGATAAAATCTTTTAACTGTTTATGATAAACTTTATGGACTTTCTCAATTTCATCTATTGTCGTCTAACCTTTGCTCTGCTTTGTTCTGAGATCAGGTTATTTTTCTTGAGCCATCTGTAGCCCGTGCTGCTTTTAAAGGTTTAGCATACAAGCGTTACAAGTGAGCTCATTCTCTTTTCTTATATGTTTGAGAACAACTGTGGTATTTTGTGGCATATGCTTAATGGAGTTACGTTTTACCATGCAGACATCATAGGTTGAAGTATAACTATCATGCTAAAAGTATTGTAGTTATTTGAATTATGAAATCTTTATCTACTATACGGAAATAGAGTGGTTGCAGTATAATTAACGATGAGTTGGTGTATCTTCCAGAAAAGATATTTCTTAATTTGTCTTATCCCGTAAGAGTTTTTGTTGTGTAACATGGATGAGGAAGGTGTCGAGTATTACTCATTTGCTGCCCCTTTGTTAGCAATGACTTTATGTTAGTATGGATATAGTGAATAGTGGTGGTATTTTAAATTTAGTTTTACCTTCTATTAACATTTTCATCTGTTGAACATTGATGTTTAATGCTTGAATACTCCACTGCTCTGTTTTTAGTTTTACCTTTTGTTATTTATTTGTTTGAGTGTCCCTTGTTTTACTTCGATCAAAAGCTTTGTTGCATTGAACATGGAGCGTGCTTTGTTCATTGAAATGCTATCTTGTGAAGTTTATTTGAGTCAAGTGTTTGGCGAAATTAAATCTTGATGCACAAATGCAAGTGCTACCTTTAATCTTTGCCCTCACTTTAAGAATACTGTGTTTGGTTGTATTGTTTTCAAATTATTTTGAAATTTGAAATATAGTTTTACCTCTCTTATTATTGATGTGAGCATGTGGGGGAGTTATCATTTTATTTATTTTTAATTTTAATTTTTGCCAACAAGAGCATATCTCAATTGGTTTAGGTATTATATCTTTTATCAAAAGGTTAGAGGTTTGAATTCTCACCCTATATATTGCTAAGGAAAGTTGAAAAAAAGCTGGGTTTTCCCCCCCTAAAAGTAATGGTTCTTTCATTTTGGCATTATCCTAGGGACGCTCCGTTATATTTGGAATGGGCTCCTGACAATATTCTTAGTCAAAATCCAATGGATGGCAATGTGAAGGACGAGAAAGTTGGTGAAGGTGATGCTAGGAGGGTGATTTTGGAGCAGGCAGTGGATGGAATATCAGATGTTGATTTTGACCCTGACAGGGTTGAGGTTTGTTTTGTTCTCTTGTTTCCCCTCCTTTTCGTTGCTTTTAGCCATTGTGATGGTTGATGGTGTCGTCCTCGTTACTTACGCTGGAAAATCGATGATCACATTGTTTTCTATCTGGTTGTCAATGAAGAGAACATGCATTGTTAACTCATGGTGGATGACCCCTTCTTAGGAAATTATAGTCTAGGATGACGCCTCTCAGGCAATAGTATTTCACTTTATTGCTGATCTTGTATTATAAATGCCGGAGAGTGTGCTCCCTCCTTATATCTGTGCTGTGCAATACCGATGATGCTGTCAGAGCACGTTAACAAGTAGGTCAATGGAACCTCTCTCTCTTTCACATGTTGTCCAT

mRNA sequence

ATGGTTGTTGAAAATATTGCTAGAAAATATGGTGTTAGTAAGGGTGAGTTATTGGACCGGGAGTCTGATGACCTTGCTGTACGAGTTGCTTTGGGTGAAACTCAAGTAGTTGCAGAGACAAAGAAGGCTCTCACAAATGCTGGAATAAATGTTGCATCTTTAGAGGAATTTGCTTCTGGTAAAGTTGATGGACACAAAAGGAGCAATCATATTCTTCTTGTGAAAAACTTGCCTTATGGTTCTTCTGAAGGAGAACTTGCAAATATGTTTGGGAAATTTGGGAGTCTGGACAAGATCATTCTTCCACCAACAAAGATATTGGCTTTGGTTATTTTTCTTGAGCCATCTGTAGCCCGTGCTGCTTTTAAAGGTTTAGCATACAAGCGTTACAAGGACGCTCCGTTATATTTGGAATGGGCTCCTGACAATATTCTTAGTCAAAATCCAATGGATGGCAATGTGAAGGACGAGAAAGTTGGTGAAGGTGATGCTAGGAGGGTGATTTTGGAGCAGGCAGTGGATGGAATATCAGATGTTGATTTTGACCCTGACAGGGTTGAGGTTTGTTTTGTTCTCTTGTTTCCCCTCCTTTTCGTTGCTTTTAGCCATTGTGATGGTTGATGGTGTCGTCCTCGTTACTTACGCTGGAAAATCGATGATCACATTGTTTTCTATCTGGTTGTCAATGAAGAGAACATGCATTGTTAACTCATGGTGGATGACCCCTTCTTAGGAAATTATAGTCTAGGATGACGCCTCTCAGGCAATAGTATTTCACTTTATTGCTGATCTTGTATTATAAATGCCGGAGAGTGTGCTCCCTCCTTATATCTGTGCTGTGCAATACCGATGATGCTGTCAGAGCACGTTAACAAGTAGGTCAATGGAACCTCTCTCTCTTTCACATGTTGTCCAT

Coding sequence (CDS)

ATGGTTGTTGAAAATATTGCTAGAAAATATGGTGTTAGTAAGGGTGAGTTATTGGACCGGGAGTCTGATGACCTTGCTGTACGAGTTGCTTTGGGTGAAACTCAAGTAGTTGCAGAGACAAAGAAGGCTCTCACAAATGCTGGAATAAATGTTGCATCTTTAGAGGAATTTGCTTCTGGTAAAGTTGATGGACACAAAAGGAGCAATCATATTCTTCTTGTGAAAAACTTGCCTTATGGTTCTTCTGAAGGAGAACTTGCAAATATGTTTGGGAAATTTGGGAGTCTGGACAAGATCATTCTTCCACCAACAAAGATATTGGCTTTGGTTATTTTTCTTGAGCCATCTGTAGCCCGTGCTGCTTTTAAAGGTTTAGCATACAAGCGTTACAAGGACGCTCCGTTATATTTGGAATGGGCTCCTGACAATATTCTTAGTCAAAATCCAATGGATGGCAATGTGAAGGACGAGAAAGTTGGTGAAGGTGATGCTAGGAGGGTGATTTTGGAGCAGGCAGTGGATGGAATATCAGATGTTGATTTTGACCCTGACAGGGTTGAGGTTTGTTTTGTTCTCTTGTTTCCCCTCCTTTTCGTTGCTTTTAGCCATTGTGATGGTTGA

Protein sequence

MVVENIARKYGVSKGELLDRESDDLAVRVALGETQVVAETKKALTNAGINVASLEEFASGKVDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKILALVIFLEPSVARAAFKGLAYKRYKDAPLYLEWAPDNILSQNPMDGNVKDEKVGEGDARRVILEQAVDGISDVDFDPDRVEVCFVLLFPLLFVAFSHCDG

Homology

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BLAST of Cp4.1LG00g08810 vs. Swiss-Prot
Match: MRD1_DICDI (Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium discoideum GN=mrd1 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.3e-28
Identity = 62/160 (38.75%), Postives = 97/160 (60.62%), Query Frame = 1


Query: 2   VVENIARKYGVSKGELLDRESDDLAVRVALGETQVVAETKKALTNAGINVASLEEFASGK 61
           +V ++A +Y +++G+LLD    DLAVR+ L ET V+ ETKK L + G+ +  +       
Sbjct: 491 IVSSLAERYKMTQGQLLDPNQMDLAVRMTLMETHVINETKKFLEDQGVIIQDIGN----- 550

Query: 62  VDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKILALVIFLEPSVARAA 121
             G KRSN +LLVKN+P+ + E EL  +F KFG L +++L P + +AL+ ++ P+ A+  
Sbjct: 551 -KGSKRSNTVLLVKNIPFKTQEHELHELFSKFGELSRVVLSPARTIALIEYIHPNEAKVG 610

Query: 122 FKGLAYKRYKDAPLYLEWAPDNILSQNPMDGNVKDEKVGE 162
           FK LAY ++   PLYLEWAP+ +         +K  +  E
Sbjct: 611 FKNLAYSKFHHVPLYLEWAPEGVFKLPAPPKEIKKSEKSE 644

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BLAST of Cp4.1LG00g08810 vs. Swiss-Prot
Match: RBM19_HUMAN (Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3)

HSP 1 Score: 121.7 bits (304), Expect = 9.3e-27
Identity = 72/184 (39.13%), Postives = 106/184 (57.61%), Query Frame = 1


Query: 2   VVENIARKYGVSKGELLDRESD-DLAVRVALGETQVVAETKKALTNAGINVASLEEFASG 61
           V + IA+KY  +K ++ D E+   +AVRVALGETQ+V E ++ L + G+++ S  + A+ 
Sbjct: 524 VADAIAQKYNATKSQVFDHETKGSVAVRVALGETQLVQEVRRFLIDNGVSLDSFSQAAA- 583

Query: 62  KVDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKILALVIFLEPSVARA 121
                +RS  ++LVKNLP G+   +L   FG FGSL +++LP   I A+V FLEP  AR 
Sbjct: 584 -----ERSKTVILVKNLPAGTLAAQLQETFGHFGSLGRVLLPEGGITAIVEFLEPLEARK 643

Query: 122 AFKGLAYKRYKDAPLYLEWAPDNILSQN-PMDGNVKDEKVGEGDARRVILEQAVDGISDV 181
           AF+ LAY ++   PLYLEWAP  + S   P    ++D      +      E   DG +  
Sbjct: 644 AFRHLAYSKFHHVPLYLEWAPVGVFSSTAPQKKKLQDTPSEPMEKDPAEPETVPDGETPE 701

Query: 182 DFDP 184
           D +P
Sbjct: 704 DENP 701

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BLAST of Cp4.1LG00g08810 vs. Swiss-Prot
Match: MRD1_YARLI (Multiple RNA-binding domain-containing protein 1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=MRD1 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 6.1e-26
Identity = 61/162 (37.65%), Postives = 98/162 (60.49%), Query Frame = 1


Query: 2   VVENIARKYGVSKGELLDRESDDLAVRVALGETQVVAETKKALTNAGINVASLEEFASGK 61
           V+E++A+  G+ K EL+D +S D AV+ AL E  V+ + K      G+++AS        
Sbjct: 425 VMESVAKSMGIKKSELIDPDSSDAAVKQALAEATVIGDVKSYFEKMGVDLASF------- 484

Query: 62  VDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKILALVIFLEPSVARAA 121
            D   R + ++LVKN P+G+++ E+A MF ++G L K+++PP   +A+VIF     ARAA
Sbjct: 485 -DNKDRDDRVILVKNFPFGTTQPEIAEMFSEYGDLYKVMMPPAGTIAIVIFKHIPDARAA 544

Query: 122 FKGLAYKRYKDAPLYLEWAPDNILSQNPMDG----NVKDEKV 160
           F  LA++R+K + LYLE  P N+L    M+     +VK +K+
Sbjct: 545 FAKLAFRRFKTSILYLEKGPKNLLPNEKMESDEVEHVKQDKI 578

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BLAST of Cp4.1LG00g08810 vs. Swiss-Prot
Match: RBM19_MOUSE (Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 7.9e-26
Identity = 65/161 (40.37%), Postives = 96/161 (59.63%), Query Frame = 1


Query: 2   VVENIARKYGVSKGELLDRES-DDLAVRVALGETQVVAETKKALTNAGINVASLEEFASG 61
           V + IA+KY  +K ++ D E+   +AVRVALGETQ+V E +  L + G+ + S  + A+ 
Sbjct: 521 VADAIAQKYNATKSQVFDHETRGSVAVRVALGETQLVQEVRSFLIDNGVCLDSFSQAAA- 580

Query: 62  KVDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKILALVIFLEPSVARA 121
                +RS  ++L KNLP G+   E+   F +FGSL +++LP   I A+V FLEP  AR 
Sbjct: 581 -----ERSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARK 640

Query: 122 AFKGLAYKRYKDAPLYLEWAPDNILSQNPMDGNVKDEKVGE 162
           AF+ LAY ++   PLYLEWAP  +    P   + + E+  E
Sbjct: 641 AFRHLAYSKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQPAE 675

[Close]

BLAST of Cp4.1LG00g08810 vs. Swiss-Prot
Match: MRD1_ASHGO (Multiple RNA-binding domain-containing protein 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MRD1 PE=3 SV=2)

HSP 1 Score: 112.8 bits (281), Expect = 4.3e-24
Identity = 58/179 (32.40%), Postives = 106/179 (59.22%), Query Frame = 1


Query: 2   VVENIARKYGVSKGELLDRESDDLAVRVALGETQVVAETKKALTNAGINVASLEEFASGK 61
           V+ ++A K G+ K +L+D E+   AV+ AL E  V+ + +K     G+++   E+F   K
Sbjct: 424 VLSSVAAKLGMEKSQLIDPENSGSAVKQALAEAHVIGDVRKYFEARGVDLTQFEKFK--K 483

Query: 62  VDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKILALVIFLEPSVARAA 121
           V   +R + I+LVKN P+G++  ELA +F  FG ++++++PP+  +A++ + +   AR A
Sbjct: 484 VT--ERDDRIILVKNFPHGTTREELAELFLPFGKIERLLMPPSGTIAIIQYRDVPAARGA 543

Query: 122 FKGLAYKRYKDAPLYLEWAPDNILSQNPMDGNVKDEKVGEGDARRVILEQAVDGISDVD 181
           F  L+YKR+K+A LYLE  P +  S+ P    + +      D + +  +++V+ + D D
Sbjct: 544 FTKLSYKRFKEAILYLEKGPKDCFSREPRGDELLEGDAAPEDVKEI--KKSVEDVMDAD 596

[Close]

BLAST of Cp4.1LG00g08810 vs. TrEMBL
Match: A0A0A0KUT3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G050790 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 8.4e-91
Identity = 172/186 (92.47%), Postives = 179/186 (96.24%), Query Frame = 1


Query: 2   VVENIARKYGVSKGELLDRESDDLAVRVALGETQVVAETKKALTNAGINVASLEEFASGK 61
           VVENIARKYGVSKGELLDRE+DDLAVRVALGETQVVAETKKALTNAG+NVASLEEFASGK
Sbjct: 419 VVENIARKYGVSKGELLDREADDLAVRVALGETQVVAETKKALTNAGVNVASLEEFASGK 478

Query: 62  VDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKILALVIFLEPSVARAA 121
            DGHKRSNHILLVKNLPYGSS+GELANMFGKFGS+DKIILP TKILALVIFLEPSVARAA
Sbjct: 479 ADGHKRSNHILLVKNLPYGSSQGELANMFGKFGSVDKIILPSTKILALVIFLEPSVARAA 538

Query: 122 FKGLAYKRYKDAPLYLEWAPDNILSQNPMDGNVKDEKVGEGDARRVILEQAVDGISDVDF 181
           FKGLAYKRYKDAPLYLEWAPDNILSQ PM GNV+DEKVGEGD RRV+LEQAV+GI DVD 
Sbjct: 539 FKGLAYKRYKDAPLYLEWAPDNILSQKPMAGNVEDEKVGEGDTRRVMLEQAVEGIPDVDL 598

Query: 182 DPDRVE 188
           DPDRVE
Sbjct: 599 DPDRVE 604

[Close]

BLAST of Cp4.1LG00g08810 vs. TrEMBL
Match: A0A0B0MKX6_GOSAR (Putative RNA-binding 19 OS=Gossypium arboreum GN=F383_21970 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 2.0e-76
Identity = 146/188 (77.66%), Postives = 169/188 (89.89%), Query Frame = 1


Query: 2   VVENIARKYGVSKGELLDRESDDLAVRVALGETQVVAETKKALTNAGINVASLEEFASGK 61
           VVENIARKYGVSK ELLDRE+DDLAVR+ALGETQV++ETKKALTNAG+N++SLEE A+GK
Sbjct: 393 VVENIARKYGVSKSELLDREADDLAVRIALGETQVISETKKALTNAGVNISSLEEIAAGK 452

Query: 62  VDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKILALVIFLEPSVARAA 121
           +DG KRSNH+LLVKNLPYGSSEGELA MFGKFGSLDKIILPPTK LALV+FLEP+ ARAA
Sbjct: 453 MDGRKRSNHVLLVKNLPYGSSEGELAKMFGKFGSLDKIILPPTKTLALVVFLEPAEARAA 512

Query: 122 FKGLAYKRYKDAPLYLEWAPDNILSQ-NPMDGNVKDE-KVGEGDARRVILEQAVDGISDV 181
           FKGLAYKR+KDAPLYLEWAPDN+L++ +  +G+ K+   VGE D +R ILEQ V+GISD 
Sbjct: 513 FKGLAYKRFKDAPLYLEWAPDNVLNKSSASEGDKKNNVAVGEHDVKRAILEQQVEGISDA 572

Query: 182 DFDPDRVE 188
           D DPDR+E
Sbjct: 573 DIDPDRIE 580

[Close]

BLAST of Cp4.1LG00g08810 vs. TrEMBL
Match: A0A0D2UP77_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G050800 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 7.6e-76
Identity = 145/188 (77.13%), Postives = 169/188 (89.89%), Query Frame = 1


Query: 2   VVENIARKYGVSKGELLDRESDDLAVRVALGETQVVAETKKALTNAGINVASLEEFASGK 61
           VVENIARKYGVSK ELLDRE+DDLAVR+ALGETQV++ETKKALTN+G+N++SLEE A+GK
Sbjct: 390 VVENIARKYGVSKSELLDREADDLAVRIALGETQVISETKKALTNSGVNISSLEEIAAGK 449

Query: 62  VDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKILALVIFLEPSVARAA 121
           +DG KRSNH+LLVKNLPYGSSEGELA MFGKFGSLDKIILPPTK LALV+FLEP+ ARAA
Sbjct: 450 MDGKKRSNHVLLVKNLPYGSSEGELAKMFGKFGSLDKIILPPTKTLALVVFLEPAEARAA 509

Query: 122 FKGLAYKRYKDAPLYLEWAPDNILSQ-NPMDGNVKDE-KVGEGDARRVILEQAVDGISDV 181
           FKGLAYKR+KDAPLYLEWAPDN+L++ +  +G+ K+   VGE D +R ILEQ V+GISD 
Sbjct: 510 FKGLAYKRFKDAPLYLEWAPDNVLNKSSASEGDKKNNVAVGEHDVKRAILEQHVEGISDA 569

Query: 182 DFDPDRVE 188
           D DPDR+E
Sbjct: 570 DIDPDRIE 577

[Close]

BLAST of Cp4.1LG00g08810 vs. TrEMBL
Match: A0A0D2RH51_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G050800 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 7.6e-76
Identity = 145/188 (77.13%), Postives = 169/188 (89.89%), Query Frame = 1


Query: 2   VVENIARKYGVSKGELLDRESDDLAVRVALGETQVVAETKKALTNAGINVASLEEFASGK 61
           VVENIARKYGVSK ELLDRE+DDLAVR+ALGETQV++ETKKALTN+G+N++SLEE A+GK
Sbjct: 423 VVENIARKYGVSKSELLDREADDLAVRIALGETQVISETKKALTNSGVNISSLEEIAAGK 482

Query: 62  VDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKILALVIFLEPSVARAA 121
           +DG KRSNH+LLVKNLPYGSSEGELA MFGKFGSLDKIILPPTK LALV+FLEP+ ARAA
Sbjct: 483 MDGKKRSNHVLLVKNLPYGSSEGELAKMFGKFGSLDKIILPPTKTLALVVFLEPAEARAA 542

Query: 122 FKGLAYKRYKDAPLYLEWAPDNILSQ-NPMDGNVKDE-KVGEGDARRVILEQAVDGISDV 181
           FKGLAYKR+KDAPLYLEWAPDN+L++ +  +G+ K+   VGE D +R ILEQ V+GISD 
Sbjct: 543 FKGLAYKRFKDAPLYLEWAPDNVLNKSSASEGDKKNNVAVGEHDVKRAILEQHVEGISDA 602

Query: 182 DFDPDRVE 188
           D DPDR+E
Sbjct: 603 DIDPDRIE 610

[Close]

BLAST of Cp4.1LG00g08810 vs. TrEMBL
Match: A0A061GD29_THECC (Nucleotide binding,nucleic acid binding,RNA binding OS=Theobroma cacao GN=TCM_029320 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 3.8e-75
Identity = 147/188 (78.19%), Postives = 165/188 (87.77%), Query Frame = 1


Query: 2   VVENIARKYGVSKGELLDRESDDLAVRVALGETQVVAETKKALTNAGINVASLEEFASGK 61
           VVENIARKYGVSK ELLDRE+DDLAVR+ALGETQV+ ETKKAL NAG+N++SLEE A+GK
Sbjct: 556 VVENIARKYGVSKSELLDREADDLAVRIALGETQVITETKKALANAGVNISSLEEVAAGK 615

Query: 62  VDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKILALVIFLEPSVARAA 121
            DG KRSNHILLVKNLPYGSS+ ELA MFGKFGSLDKIILPPTK LALVIFLEP+ ARAA
Sbjct: 616 TDGMKRSNHILLVKNLPYGSSDDELAKMFGKFGSLDKIILPPTKTLALVIFLEPAEARAA 675

Query: 122 FKGLAYKRYKDAPLYLEWAPDNILSQ-NPMDGNVKDE-KVGEGDARRVILEQAVDGISDV 181
           FKGLAYKRYKDAPLYLEWAPDN+LS+ +  +G+ K+   VGE D +R ILEQ V+GISD 
Sbjct: 676 FKGLAYKRYKDAPLYLEWAPDNVLSKSSTSEGDKKNNAAVGEHDVKRAILEQLVEGISDA 735

Query: 182 DFDPDRVE 188
           D DPDR+E
Sbjct: 736 DIDPDRIE 743

[Close]

BLAST of Cp4.1LG00g08810 vs. TAIR10
Match: AT4G19610.1 (AT4G19610.1 nucleotide binding;nucleic acid binding;RNA binding)

HSP 1 Score: 226.1 bits (575), Expect = 2.0e-59
Identity = 120/187 (64.17%), Postives = 141/187 (75.40%), Query Frame = 1


Query: 2   VVENIARKYGVSKGELLDRESDDLAVRVALGETQVVAETKKALTNAGINVASLEEFASGK 61
           ++ENI R YGVSK ELLDRE++D AVR+ALGET+V+AETK+AL  AG+NV SLE+FA+  
Sbjct: 420 ILENIVRVYGVSKSELLDREAEDPAVRLALGETKVIAETKEALAKAGVNVTSLEKFATRN 479

Query: 62  VDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKILALVIFLEPSVARAA 121
            D   RS HILLVKNLP+ S+E ELA MFGKFGSLDKIILPPTK +AL +FLEP+ ARAA
Sbjct: 480 GDEKNRSKHILLVKNLPFASTEKELAQMFGKFGSLDKIILPPTKTMALAVFLEPAEARAA 539

Query: 122 FKGLAYKRYKDAPLYLEWAPDNILS-QNPMDGNVKDEKVGEGDARRVILEQAVDGISDVD 181
            KG+AYKRYKDAPLYLEWAP NIL  +N  D N +   + E   RRV LEQ       V+
Sbjct: 540 LKGMAYKRYKDAPLYLEWAPGNILEPKNLPDTNEERSDIEENGVRRVNLEQ------QVE 599

Query: 182 FDPDRVE 188
            DPD  E
Sbjct: 600 IDPDVTE 600

[Close]

BLAST of Cp4.1LG00g08810 vs. TAIR10
Match: AT5G08695.1 (AT5G08695.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 213.4 bits (542), Expect = 1.3e-55
Identity = 112/179 (62.57%), Postives = 134/179 (74.86%), Query Frame = 1


Query: 2   VVENIARKYGVSKGELLDRESDDLAVRVALGETQVVAETKKALTNAGINVASLEEFASGK 61
           ++EN+ R YGV+K ELLDRE +D AVR+ALGET+V+ ETK+AL  AG+ V SLEEFA+ K
Sbjct: 353 ILENLVRSYGVTKSELLDRECEDPAVRLALGETRVIMETKEALAKAGVRVTSLEEFAARK 412

Query: 62  VDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKILALVIFLEPSVARAA 121
            D   RS HILLVK+LP+ S+E ELA MF KFGSLDKI+LPPTK +ALV+FLE + ARAA
Sbjct: 413 GDVKNRSKHILLVKHLPFASTEKELAQMFRKFGSLDKIVLPPTKTMALVVFLEAAEARAA 472

Query: 122 FKGLAYKRYKDAPLYLEWAPDNILSQNPM-DGNVKDEKVGEGDARRVILEQAVDGISDV 180
             GLAY RYKDAPLYLEWAP +IL    + D   K   V E DARRV L+Q V   SD+
Sbjct: 473 MNGLAYTRYKDAPLYLEWAPRDILEPKALADNKEKKSAVEENDARRVNLDQQVGIYSDI 531

[Close]

BLAST of Cp4.1LG00g08810 vs. NCBI nr
Match: gi|778690978|ref|XP_011653203.1| (PREDICTED: multiple RNA-binding domain-containing protein 1 [Cucumis sativus])

HSP 1 Score: 341.3 bits (874), Expect = 1.2e-90
Identity = 172/186 (92.47%), Postives = 179/186 (96.24%), Query Frame = 1


Query: 2   VVENIARKYGVSKGELLDRESDDLAVRVALGETQVVAETKKALTNAGINVASLEEFASGK 61
           VVENIARKYGVSKGELLDRE+DDLAVRVALGETQVVAETKKALTNAG+NVASLEEFASGK
Sbjct: 419 VVENIARKYGVSKGELLDREADDLAVRVALGETQVVAETKKALTNAGVNVASLEEFASGK 478

Query: 62  VDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKILALVIFLEPSVARAA 121
            DGHKRSNHILLVKNLPYGSS+GELANMFGKFGS+DKIILP TKILALVIFLEPSVARAA
Sbjct: 479 ADGHKRSNHILLVKNLPYGSSQGELANMFGKFGSVDKIILPSTKILALVIFLEPSVARAA 538

Query: 122 FKGLAYKRYKDAPLYLEWAPDNILSQNPMDGNVKDEKVGEGDARRVILEQAVDGISDVDF 181
           FKGLAYKRYKDAPLYLEWAPDNILSQ PM GNV+DEKVGEGD RRV+LEQAV+GI DVD 
Sbjct: 539 FKGLAYKRYKDAPLYLEWAPDNILSQKPMAGNVEDEKVGEGDTRRVMLEQAVEGIPDVDL 598

Query: 182 DPDRVE 188
           DPDRVE
Sbjct: 599 DPDRVE 604

[Close]

BLAST of Cp4.1LG00g08810 vs. NCBI nr
Match: gi|659102156|ref|XP_008451980.1| (PREDICTED: multiple RNA-binding domain-containing protein 1 [Cucumis melo])

HSP 1 Score: 338.2 bits (866), Expect = 1.0e-89
Identity = 170/186 (91.40%), Postives = 179/186 (96.24%), Query Frame = 1


Query: 2   VVENIARKYGVSKGELLDRESDDLAVRVALGETQVVAETKKALTNAGINVASLEEFASGK 61
           VVENIARKYGVSKGELLD+E+DDLAVRVALGETQVVAETKKALTNAG+NVASLEEFASGK
Sbjct: 421 VVENIARKYGVSKGELLDKEADDLAVRVALGETQVVAETKKALTNAGVNVASLEEFASGK 480

Query: 62  VDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKILALVIFLEPSVARAA 121
            D HKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKILALVIFLEPSVARAA
Sbjct: 481 ADEHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKILALVIFLEPSVARAA 540

Query: 122 FKGLAYKRYKDAPLYLEWAPDNILSQNPMDGNVKDEKVGEGDARRVILEQAVDGISDVDF 181
           FKGLAYKRYKDAPLYLEWAPDNILS+ P+ GNV+DE VGEGD RRV+LEQA++GISDVD 
Sbjct: 541 FKGLAYKRYKDAPLYLEWAPDNILSKKPITGNVEDETVGEGDTRRVMLEQAMEGISDVDL 600

Query: 182 DPDRVE 188
           DPDRVE
Sbjct: 601 DPDRVE 606

[Close]

BLAST of Cp4.1LG00g08810 vs. NCBI nr
Match: gi|728812978|gb|KHG01037.1| (putative RNA-binding 19 [Gossypium arboreum])

HSP 1 Score: 293.5 bits (750), Expect = 2.9e-76
Identity = 146/188 (77.66%), Postives = 169/188 (89.89%), Query Frame = 1


Query: 2   VVENIARKYGVSKGELLDRESDDLAVRVALGETQVVAETKKALTNAGINVASLEEFASGK 61
           VVENIARKYGVSK ELLDRE+DDLAVR+ALGETQV++ETKKALTNAG+N++SLEE A+GK
Sbjct: 393 VVENIARKYGVSKSELLDREADDLAVRIALGETQVISETKKALTNAGVNISSLEEIAAGK 452

Query: 62  VDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKILALVIFLEPSVARAA 121
           +DG KRSNH+LLVKNLPYGSSEGELA MFGKFGSLDKIILPPTK LALV+FLEP+ ARAA
Sbjct: 453 MDGRKRSNHVLLVKNLPYGSSEGELAKMFGKFGSLDKIILPPTKTLALVVFLEPAEARAA 512

Query: 122 FKGLAYKRYKDAPLYLEWAPDNILSQ-NPMDGNVKDE-KVGEGDARRVILEQAVDGISDV 181
           FKGLAYKR+KDAPLYLEWAPDN+L++ +  +G+ K+   VGE D +R ILEQ V+GISD 
Sbjct: 513 FKGLAYKRFKDAPLYLEWAPDNVLNKSSASEGDKKNNVAVGEHDVKRAILEQQVEGISDA 572

Query: 182 DFDPDRVE 188
           D DPDR+E
Sbjct: 573 DIDPDRIE 580

[Close]

BLAST of Cp4.1LG00g08810 vs. NCBI nr
Match: gi|763803003|gb|KJB69941.1| (hypothetical protein B456_011G050800 [Gossypium raimondii])

HSP 1 Score: 291.6 bits (745), Expect = 1.1e-75
Identity = 145/188 (77.13%), Postives = 169/188 (89.89%), Query Frame = 1


Query: 2   VVENIARKYGVSKGELLDRESDDLAVRVALGETQVVAETKKALTNAGINVASLEEFASGK 61
           VVENIARKYGVSK ELLDRE+DDLAVR+ALGETQV++ETKKALTN+G+N++SLEE A+GK
Sbjct: 390 VVENIARKYGVSKSELLDREADDLAVRIALGETQVISETKKALTNSGVNISSLEEIAAGK 449

Query: 62  VDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKILALVIFLEPSVARAA 121
           +DG KRSNH+LLVKNLPYGSSEGELA MFGKFGSLDKIILPPTK LALV+FLEP+ ARAA
Sbjct: 450 MDGKKRSNHVLLVKNLPYGSSEGELAKMFGKFGSLDKIILPPTKTLALVVFLEPAEARAA 509

Query: 122 FKGLAYKRYKDAPLYLEWAPDNILSQ-NPMDGNVKDE-KVGEGDARRVILEQAVDGISDV 181
           FKGLAYKR+KDAPLYLEWAPDN+L++ +  +G+ K+   VGE D +R ILEQ V+GISD 
Sbjct: 510 FKGLAYKRFKDAPLYLEWAPDNVLNKSSASEGDKKNNVAVGEHDVKRAILEQHVEGISDA 569

Query: 182 DFDPDRVE 188
           D DPDR+E
Sbjct: 570 DIDPDRIE 577

[Close]

BLAST of Cp4.1LG00g08810 vs. NCBI nr
Match: gi|823247396|ref|XP_012456372.1| (PREDICTED: probable RNA-binding protein 19 [Gossypium raimondii])

HSP 1 Score: 291.6 bits (745), Expect = 1.1e-75
Identity = 145/188 (77.13%), Postives = 169/188 (89.89%), Query Frame = 1


Query: 2   VVENIARKYGVSKGELLDRESDDLAVRVALGETQVVAETKKALTNAGINVASLEEFASGK 61
           VVENIARKYGVSK ELLDRE+DDLAVR+ALGETQV++ETKKALTN+G+N++SLEE A+GK
Sbjct: 423 VVENIARKYGVSKSELLDREADDLAVRIALGETQVISETKKALTNSGVNISSLEEIAAGK 482

Query: 62  VDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKILALVIFLEPSVARAA 121
           +DG KRSNH+LLVKNLPYGSSEGELA MFGKFGSLDKIILPPTK LALV+FLEP+ ARAA
Sbjct: 483 MDGKKRSNHVLLVKNLPYGSSEGELAKMFGKFGSLDKIILPPTKTLALVVFLEPAEARAA 542

Query: 122 FKGLAYKRYKDAPLYLEWAPDNILSQ-NPMDGNVKDE-KVGEGDARRVILEQAVDGISDV 181
           FKGLAYKR+KDAPLYLEWAPDN+L++ +  +G+ K+   VGE D +R ILEQ V+GISD 
Sbjct: 543 FKGLAYKRFKDAPLYLEWAPDNVLNKSSASEGDKKNNVAVGEHDVKRAILEQHVEGISDA 602

Query: 182 DFDPDRVE 188
           D DPDR+E
Sbjct: 603 DIDPDRIE 610

The following BLAST results are available for this feature:

BLAST of Cp4.1LG00g08810 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MRD1_DICDI	1.3e-28	38.75	Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium discoideum GN=...	[more]
RBM19_HUMAN	9.3e-27	39.13	Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3	[more]
MRD1_YARLI	6.1e-26	37.65	Multiple RNA-binding domain-containing protein 1 OS=Yarrowia lipolytica (strain ...	[more]
RBM19_MOUSE	7.9e-26	40.37	Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1	[more]
MRD1_ASHGO	4.3e-24	32.40	Multiple RNA-binding domain-containing protein 1 OS=Ashbya gossypii (strain ATCC...	[more]

BLAST of Cp4.1LG00g08810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUT3_CUCSA	8.4e-91	92.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G050790 PE=4 SV=1	[more]
A0A0B0MKX6_GOSAR	2.0e-76	77.66	Putative RNA-binding 19 OS=Gossypium arboreum GN=F383_21970 PE=4 SV=1	[more]
A0A0D2UP77_GOSRA	7.6e-76	77.13	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G050800 PE=4 SV=1	[more]
A0A0D2RH51_GOSRA	7.6e-76	77.13	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G050800 PE=4 SV=1	[more]
A0A061GD29_THECC	3.8e-75	78.19	Nucleotide binding,nucleic acid binding,RNA binding OS=Theobroma cacao GN=TCM_02...	[more]

BLAST of Cp4.1LG00g08810 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G19610.1	2.0e-59	64.17	nucleotide binding;nucleic acid binding;RNA binding	[more]
AT5G08695.1	1.3e-55	62.57	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Cp4.1LG00g08810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778690978\|ref\|XP_011653203.1\|	1.2e-90	92.47	PREDICTED: multiple RNA-binding domain-containing protein 1 [Cucumis sativus]	[more]
gi\|659102156\|ref\|XP_008451980.1\|	1.0e-89	91.40	PREDICTED: multiple RNA-binding domain-containing protein 1 [Cucumis melo]	[more]
gi\|728812978\|gb\|KHG01037.1\|	2.9e-76	77.66	putative RNA-binding 19 [Gossypium arboreum]	[more]
gi\|763803003\|gb\|KJB69941.1\|	1.1e-75	77.13	hypothetical protein B456_011G050800 [Gossypium raimondii]	[more]
gi\|823247396\|ref\|XP_012456372.1\|	1.1e-75	77.13	PREDICTED: probable RNA-binding protein 19 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG00g08810.1	Cp4.1LG00g08810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 72..134 score: 1.
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 71..138 score: 8.
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 70..142 score: 10
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 67..155 score: 1.4
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 66..153 score: 3.09

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG00g08810	Cucurbita pepo (Zucchini)	cpecpeB001