Cp4.1LG00g08710 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG00g08710
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Histone deacetylase 18-like protein
Location	Cp4.1LG00 : 27413304 .. 27413884 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATGTCCACCACCACTTGTTGCCTGAACAACCTCAATCCGCCGCCGCGGCTGCTCCCGAAGTCCACCACACCCACCACCAATCAACTCCTTCCACGGTAATTACTTACCACACTCCGATCATTCATTTTGGTTCTGTAATTAAAAAAATCGATCTGCTTTCGAATTTACAAAACCAGGGATTAAATTTAAACATCTGTGTGGAATTGGGCAGGAATGGAAATGGAGAACGATGGCAAAAGCGGTGCGTTTTGGGGGTGGTCGGAGTGGCAGTGGCTCTGCAAATGGTCGGAGAAAGTGGCGGCGTAGAAATGGGAGATGTCAATTTTGTTGATTCCAGAAAATGGAGCGAAGAAAGAATGTGCCCACAGTGGCGGCTCAATTCCCTCGAAACCATCGTGCCGGAGAATCTCCCAAGGCCGGCCGCCCGCCGGAGATGGGAGCCCGCCGCCCTTCCTCGCACAGCTCCTCAACTCCGAACCATACATCCATCTCCCCTCTCTACTCGCTGCTTCTCTATGTAATTACCAAATCCCTAAATACCAATGCTTAAATACCATTTTACAATATGAATAAGC

mRNA sequence

ATGGCTATGTCCACCACCACTTGTTGCCTGAACAACCTCAATCCGCCGCCGCGGCTGCTCCCGAAGTCCACCACACCCACCACCAATCAACTCCTTCCACGGAATGGAAATGGAGAACGATGGCAAAAGCGGTGCGTTTTGGGGGTGGTCGGAGTGGCAGTGGCTCTGCAAATGGTCGGAGAAAGTGGCGGCGTAGAAATGGGAGATGTCAATTTTGTTGATTCCAGAAAATGGAGCGAAGAAAGAATGTGCCCACAGTGGCGGCTCAATTCCCTCGAAACCATCGTGCCGGAGAATCTCCCAAGGCCGGCCGCCCGCCGGAGATGGGAGCCCGCCGCCCTTCCTCGCACAGCTCCTCAACTCCGAACCATACATCCATCTCCCCTCTCTACTCGCTGCTTCTCTATGTAATTACCAAATCCCTAAATACCAATGCTTAAATACCATTTTACAATATGAATAAGC

Coding sequence (CDS)

ATGGCTATGTCCACCACCACTTGTTGCCTGAACAACCTCAATCCGCCGCCGCGGCTGCTCCCGAAGTCCACCACACCCACCACCAATCAACTCCTTCCACGGAATGGAAATGGAGAACGATGGCAAAAGCGGTGCGTTTTGGGGGTGGTCGGAGTGGCAGTGGCTCTGCAAATGGTCGGAGAAAGTGGCGGCGTAGAAATGGGAGATGTCAATTTTGTTGATTCCAGAAAATGGAGCGAAGAAAGAATGTGCCCACAGTGGCGGCTCAATTCCCTCGAAACCATCGTGCCGGAGAATCTCCCAAGGCCGGCCGCCCGCCGGAGATGGGAGCCCGCCGCCCTTCCTCGCACAGCTCCTCAACTCCGAACCATACATCCATCTCCCCTCTCTACTCGCTGCTTCTCTATGTAA

Protein sequence

MAMSTTTCCLNNLNPPPRLLPKSTTPTTNQLLPRNGNGERWQKRCVLGVVGVAVALQMVGESGGVEMGDVNFVDSRKWSEERMCPQWRLNSLETIVPENLPRPAARRRWEPAALPRTAPQLRTIHPSPLSTRCFSM

Homology

[Close]

BLAST of Cp4.1LG00g08710 vs. TrEMBL
Match: A0A0A0LLU6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G379360 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.2e-50
Identity = 103/133 (77.44%), Postives = 110/133 (82.71%), Query Frame = 1


Query: 6   TTCCLNNLNPPPRLLPKSTTPTTNQLLPRNGNGERWQKRCVLGVVGVAVALQMVGESGGV 65
           TTCCLNNLNPPPRL   ST  T   LLP NGNGE W+KRCVLG  GV  AL M GES GV
Sbjct: 5   TTCCLNNLNPPPRLHQNSTASTNAPLLPPNGNGEWWRKRCVLGAAGVMTALVMSGESSGV 64

Query: 66  EMGDVNFVDSRKWSEERMCPQWRLNSLETIVPENLPRPAARRRWEPAALPRT--APQLRT 125
           EM ++NFVDSRKWSEERMCPQWRLNSLETIVPENLPRPAARRRW+PAALP+T  APQLRT
Sbjct: 65  EMENLNFVDSRKWSEERMCPQWRLNSLETIVPENLPRPAARRRWDPAALPQTRPAPQLRT 124

Query: 126 IHPSPLSTRCFSM 137
            + + LSTRCFSM
Sbjct: 125 TNTTSLSTRCFSM 137

[Close]

BLAST of Cp4.1LG00g08710 vs. TrEMBL
Match: B9RKU9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1053560 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 8.1e-18
Identity = 61/152 (40.13%), Postives = 82/152 (53.95%), Query Frame = 1


Query: 5   TTTCCLNNLNPPPRL---LPKSTTPTTNQLLPRNGNGERWQKRCVLGVVGVAVALQM--- 64
           TT+CCLN   PPP     LP S++ T           E+W+ +CVLG+  + + L+M   
Sbjct: 4   TTSCCLNMNIPPPTSASSLPSSSSTTKPTAQASWFKNEKWRSQCVLGMACMIIGLEMDNL 63

Query: 65  VGESGGVEMGDVNFVD---------SRKWSEERMCPQWRLNSLETIVPENLPRPAARRRW 124
           V E   + M   N            +R+WS++RMCP WRLNSLETIVPENLPRP+ARRRW
Sbjct: 64  VNEETNLAMAAENSSSVVELKVKPKTRRWSDKRMCPPWRLNSLETIVPENLPRPSARRRW 123

Query: 125 EPAAL----PRTAPQLR-TIHPSPLSTRCFSM 137
           E        P  AP  + ++    +   CF+M
Sbjct: 124 EATGYSKIDPAPAPARKVSVKSIMIMDNCFTM 155

[Close]

BLAST of Cp4.1LG00g08710 vs. TrEMBL
Match: A0A061GQG6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_038341 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.3e-17
Identity = 57/145 (39.31%), Postives = 83/145 (57.24%), Query Frame = 1


Query: 1   MAMSTTTCCLNNLNPPPRL---LPKSTTPTTNQLLPRNGNGERWQKRCVLGVVGVAVALQ 60
           MA+ST  CCLN   P P     +  S    +    PR+   ++W+K+CVLGV  + + LQ
Sbjct: 1   MAISTR-CCLNVSPPTPTPGFDMSSSNKKASQVAWPRD---DKWRKQCVLGVTCIVIGLQ 60

Query: 61  M--VGESGGV--EMGDVNFVDSR--KWSEERMCPQWRLNSLETIVPENLPRPAARRRWEP 120
           +  + ++  +  E+      +S+  +WS++R+CP W  NSLETIVPENLPRP+A RRWE 
Sbjct: 61  VGNITDNSAIAEEVSSATESNSKVARWSDKRVCPPWNANSLETIVPENLPRPSAHRRWEA 120

Query: 121 AALPRTAPQLRTIHPSPLSTRCFSM 137
               + AP +R    +   T CFSM
Sbjct: 121 IGFSKNAPAVRVKVTTKTRTNCFSM 141

[Close]

BLAST of Cp4.1LG00g08710 vs. TrEMBL
Match: A5BJF3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004448 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.3e-17
Identity = 55/139 (39.57%), Postives = 78/139 (56.12%), Query Frame = 1


Query: 8   CCLNNLNPPPRLLPKST---TPTTNQLLPRNGNGERWQKRCVLGVVGVAVALQMVGESGG 67
           CCLN   PP    P+S+   T T     PR  N  +   +C++G+  + ++L+M     G
Sbjct: 7   CCLNLSPPPSGSSPRSSRSSTKTDQVSWPRKENSLK--SKCLVGLTCMIISLEMSNLMSG 66

Query: 68  VEMG---DVNFVDSRK----WSEERMCPQWRLNSLETIVPENLPRPAARRRWEPAALPRT 127
             +    D+  +  RK    WS++RMCP W+LNSLETIVPENLPRP+ RRRWE      T
Sbjct: 67  EGLAIAQDLQLIGERKEVTRWSDKRMCPPWQLNSLETIVPENLPRPSTRRRWESVGHSTT 126

Query: 128 APQLRTIHPSPLSTRCFSM 137
           AP ++ +  +   + CFSM
Sbjct: 127 APAVKILFRAHTKSDCFSM 143

[Close]

BLAST of Cp4.1LG00g08710 vs. TrEMBL
Match: A0A068U8M8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019574001 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.0e-16
Identity = 56/134 (41.79%), Postives = 75/134 (55.97%), Query Frame = 1


Query: 1   MAMSTTTCCLNNLNPPPRLLPKSTTPTTNQLL----PRNGNGERWQKRCVLGVVGVAVAL 60
           MA+S + CCLN L PPP  +  S  P  ++      P+N     W+++C+LGV  + V L
Sbjct: 1   MALSIS-CCLN-LPPPPSCIATSDQPLASKASHLAWPKNPKERSWKRKCLLGVATLLVGL 60

Query: 61  QM----VGESGGV---------EMGDVNFVDSRKWSEERMCPQWRLNSLETIVPENLPRP 118
           +M    VGE             EM   + +  ++WS+ R CP W +NSLETIVPENLPRP
Sbjct: 61  EMSNLVVGEQEMALAWDLQQQEEMASKSVIKVQRWSDRRTCPSWHVNSLETIVPENLPRP 120

[Close]

BLAST of Cp4.1LG00g08710 vs. TAIR10
Match: AT2G25625.1 (AT2G25625.1 unknown protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-10
Identity = 51/151 (33.77%), Postives = 74/151 (49.01%), Query Frame = 1


Query: 7   TCCLN--NLNPPPRLLPKSTTPTTNQLLPRNGNGERWQKRCVLG-VVGVAVALQMVGESG 66
           +CCLN   L+        S   TT+++  R    E   ++     V+GVA  + +    G
Sbjct: 6   SCCLNLPPLDSNSAQSLASLLKTTSKISCRRTENETEPRKNKCSFVLGVAATVVI----G 65

Query: 67  GVEMGDVNFVDS-----------------RKWSEERMCPQWRLNSLETIVPENLPRPAAR 126
           G+++ DV  V++                 R+WS++R CP W  NSLETIVPENLPRP+A 
Sbjct: 66  GIQINDVASVEAAVVKSPVEEMAAGVVPPRRWSDKRTCPPWLENSLETIVPENLPRPSAH 125

Query: 127 RRWEPAALPR-TAPQLRTIHPSPLSTRCFSM 137
           RR E A L +  AP +  +        CFS+
Sbjct: 126 RRLELAGLAKGDAPPVGVVMTRVNRGGCFSV 152

[Close]

BLAST of Cp4.1LG00g08710 vs. NCBI nr
Match: gi|700207786|gb|KGN62905.1| (hypothetical protein Csa_2G379360 [Cucumis sativus])

HSP 1 Score: 207.2 bits (526), Expect = 1.8e-50
Identity = 103/133 (77.44%), Postives = 110/133 (82.71%), Query Frame = 1


Query: 6   TTCCLNNLNPPPRLLPKSTTPTTNQLLPRNGNGERWQKRCVLGVVGVAVALQMVGESGGV 65
           TTCCLNNLNPPPRL   ST  T   LLP NGNGE W+KRCVLG  GV  AL M GES GV
Sbjct: 5   TTCCLNNLNPPPRLHQNSTASTNAPLLPPNGNGEWWRKRCVLGAAGVMTALVMSGESSGV 64

Query: 66  EMGDVNFVDSRKWSEERMCPQWRLNSLETIVPENLPRPAARRRWEPAALPRT--APQLRT 125
           EM ++NFVDSRKWSEERMCPQWRLNSLETIVPENLPRPAARRRW+PAALP+T  APQLRT
Sbjct: 65  EMENLNFVDSRKWSEERMCPQWRLNSLETIVPENLPRPAARRRWDPAALPQTRPAPQLRT 124

Query: 126 IHPSPLSTRCFSM 137
            + + LSTRCFSM
Sbjct: 125 TNTTSLSTRCFSM 137

[Close]

BLAST of Cp4.1LG00g08710 vs. NCBI nr
Match: gi|659088755|ref|XP_008445145.1| (PREDICTED: uncharacterized protein LOC103488267 [Cucumis melo])

HSP 1 Score: 203.0 bits (515), Expect = 3.4e-49
Identity = 108/141 (76.60%), Postives = 118/141 (83.69%), Query Frame = 1


Query: 1   MAMSTTTCCLNNLNPPPRLLPKSTTPTTNQLLPRNGNGERW-QKRCVLGVVGVAVALQMV 60
           MAM+TT CC+NNLNPPPRL   ST  T N LLP NG+G++W +KRCVLGV GV  AL M 
Sbjct: 1   MAMATT-CCVNNLNPPPRLYQNSTASTNNPLLPLNGSGDQWWRKRCVLGVAGVMTALIMS 60

Query: 61  GESGGVEMGDVN-FVD-SRKWSEERMCPQWRLNSLETIVPENLPRPAARRRWEPAALPRT 120
           GESGGVEMG+VN FVD SRKWSEERMCPQWRLNSLETIVPENLPRPAARRRW+PAALP T
Sbjct: 61  GESGGVEMGNVNSFVDNSRKWSEERMCPQWRLNSLETIVPENLPRPAARRRWDPAALPHT 120

Query: 121 --APQLRTIHPSPLSTRCFSM 137
             APQLRT + + LSTRCFSM
Sbjct: 121 APAPQLRTTNTASLSTRCFSM 140

[Close]

BLAST of Cp4.1LG00g08710 vs. NCBI nr
Match: gi|470110443|ref|XP_004291493.1| (PREDICTED: uncharacterized protein LOC101297404 [Fragaria vesca subsp. vesca])

HSP 1 Score: 99.4 bits (246), Expect = 5.2e-18
Identity = 65/149 (43.62%), Postives = 81/149 (54.36%), Query Frame = 1


Query: 1   MAMSTTTCCLNNLNPPPRLLPKSTTPTTNQ--LLPRNGNGERWQKRCVLGVVGVAVALQM 60
           MAM++ +C LN L PP + L  S+   TNQ  L      G  W  RCV+G+  V V L+M
Sbjct: 1   MAMTSFSCSLNQLPPPAQSLGPSSPSKTNQVQLAWNKSEGGSWSSRCVVGMACVMVGLEM 60

Query: 61  VGESGGVE-------MGDVNFVDSRK---WSEERMCPQWRLNSLETIVPENLPRPAARRR 120
            G   G         M  +    S K   WS++RMCP+WR N LETIVPENLPRP+A RR
Sbjct: 61  GGLVSGQSHEAIAKGMPPLVMESSEKVAKWSDKRMCPKWRANELETIVPENLPRPSAHRR 120

Query: 121 WEPAAL-PRTAPQLRTIHPSPLSTRCFSM 137
           WE      R AP ++T+     S  CFSM
Sbjct: 121 WEIVGFNTRDAPAVKTV-ARRSSGGCFSM 148

[Close]

BLAST of Cp4.1LG00g08710 vs. NCBI nr
Match: gi|255546567|ref|XP_002514343.1| (PREDICTED: uncharacterized protein LOC8284834 [Ricinus communis])

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-17
Identity = 61/152 (40.13%), Postives = 82/152 (53.95%), Query Frame = 1


Query: 5   TTTCCLNNLNPPPRL---LPKSTTPTTNQLLPRNGNGERWQKRCVLGVVGVAVALQM--- 64
           TT+CCLN   PPP     LP S++ T           E+W+ +CVLG+  + + L+M   
Sbjct: 4   TTSCCLNMNIPPPTSASSLPSSSSTTKPTAQASWFKNEKWRSQCVLGMACMIIGLEMDNL 63

Query: 65  VGESGGVEMGDVNFVD---------SRKWSEERMCPQWRLNSLETIVPENLPRPAARRRW 124
           V E   + M   N            +R+WS++RMCP WRLNSLETIVPENLPRP+ARRRW
Sbjct: 64  VNEETNLAMAAENSSSVVELKVKPKTRRWSDKRMCPPWRLNSLETIVPENLPRPSARRRW 123

Query: 125 EPAAL----PRTAPQLR-TIHPSPLSTRCFSM 137
           E        P  AP  + ++    +   CF+M
Sbjct: 124 EATGYSKIDPAPAPARKVSVKSIMIMDNCFTM 155

[Close]

BLAST of Cp4.1LG00g08710 vs. NCBI nr
Match: gi|225430167|ref|XP_002284793.1| (PREDICTED: uncharacterized protein LOC100261242 [Vitis vinifera])

HSP 1 Score: 96.7 bits (239), Expect = 3.4e-17
Identity = 56/139 (40.29%), Postives = 78/139 (56.12%), Query Frame = 1


Query: 8   CCLNNLNPPPRLLP---KSTTPTTNQLLPRNGNGERWQKRCVLGVVGVAVALQMVGESGG 67
           CCLN   PP    P   +S+T T     PR  N  +   +CV+G+  + ++L+M     G
Sbjct: 7   CCLNLSPPPSGSSPSSSRSSTKTDQVSWPRKENSLK--SKCVVGLTCMIISLEMSNLMSG 66

Query: 68  VEMG---DVNFVDSRK----WSEERMCPQWRLNSLETIVPENLPRPAARRRWEPAALPRT 127
             +    D+  +  RK    WS++RMCP W+LNSLETIVPENLPRP+ RRRWE      T
Sbjct: 67  EGLAIAQDLQLIGERKEVTRWSDKRMCPPWQLNSLETIVPENLPRPSTRRRWESVGHSTT 126

Query: 128 APQLRTIHPSPLSTRCFSM 137
           AP ++ +  +   + CFSM
Sbjct: 127 APAVKILFRAHTKSDCFSM 143

The following BLAST results are available for this feature:

BLAST of Cp4.1LG00g08710 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG00g08710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLU6_CUCSA	1.2e-50	77.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G379360 PE=4 SV=1	[more]
B9RKU9_RICCO	8.1e-18	40.13	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1053560 PE=4 SV=1	[more]
A0A061GQG6_THECC	5.3e-17	39.31	Uncharacterized protein OS=Theobroma cacao GN=TCM_038341 PE=4 SV=1	[more]
A5BJF3_VITVI	5.3e-17	39.57	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004448 PE=4 SV=1	[more]
A0A068U8M8_COFCA	2.0e-16	41.79	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019574001 PE=4 SV=1	[more]

BLAST of Cp4.1LG00g08710 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G25625.1	1.1e-10	33.77	unknown protein	[more]

BLAST of Cp4.1LG00g08710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700207786\|gb\|KGN62905.1\|	1.8e-50	77.44	hypothetical protein Csa_2G379360 [Cucumis sativus]	[more]
gi\|659088755\|ref\|XP_008445145.1\|	3.4e-49	76.60	PREDICTED: uncharacterized protein LOC103488267 [Cucumis melo]	[more]
gi\|470110443\|ref\|XP_004291493.1\|	5.2e-18	43.62	PREDICTED: uncharacterized protein LOC101297404 [Fragaria vesca subsp. vesca]	[more]
gi\|255546567\|ref\|XP_002514343.1\|	1.2e-17	40.13	PREDICTED: uncharacterized protein LOC8284834 [Ricinus communis]	[more]
gi\|225430167\|ref\|XP_002284793.1\|	3.4e-17	40.29	PREDICTED: uncharacterized protein LOC100261242 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG00g08710.1	Cp4.1LG00g08710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37210	FAMILY NOT NAMED	coord: 4..132 score: 3.3
None	No IPR available	PANTHER	PTHR37210:SF2	EXPRESSED PROTEIN	coord: 4..132 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG00g08710	Cucurbita pepo (Zucchini)	cpecpeB001