Cp4.1LG00g04480 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG00g04480
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTransmembrane protein
LocationCp4.1LG00 : 16611577 .. 16612207 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTGCCTTGTTCTTTGCAGCTACATGCATGACGTGATCTACATTACGAGCTTTGTGCAAATAATGTCAATCCTCTCTGGGAAGTTTTGGTACACCTACCTTGTGGTAAGGTCCAAATACTTTTGAAATTGAACTTGGACATATTTAGTGTAATATATAGCCTAGGAACAACCCTGATATTTGGGTGTGAAATAATGTCATTGATATATCTTTCTGAAATGACTTTAATTGTACATCTAAACATTATTTTCATTATTACCTATATTAACAAATGTTCATGCATCTGCTAGAAAGTTCAAAATACTTCGTCGGGCGACCAACAAGTTAAAATAGGCACATCTAACTCTGTTTGATGTTCATTTTTCTGTTGCTCTGCAGATTCCAGCATTTGGGGTATACAAATCTTCTGGTTTAATTAAGAGTTTATTGTCGCACGGTTCAGAGGTAATCTATCCTCACCAAACAAGATTTCCTGTATTTTAAAAACGGCCCGGTCTTCTCTTTTCATTTAGGCGTGTACTCGTGTGTCGTTTAGGATGAACCTGAGGATGAGAAGACTCGCAAGAAGAGGGAAAAGATGGAGAAGAAAGCTTCAAGAGTGAAGTTTATGAAAACCAAGAATAGATAA

mRNA sequence

ATGGGTTGCCTTGTTCTTTGCAGCTACATGCATGACGTGATCTACATTACGAGCTTTGTGCAAATAATGTCAATCCTCTCTGGGAAGTTTTGGTACACCTACCTTGTGATTCCAGCATTTGGGGTATACAAATCTTCTGGTTTAATTAAGAGTTTATTGTCGCACGGTTCAGAGGATGAACCTGAGGATGAGAAGACTCGCAAGAAGAGGGAAAAGATGGAGAAGAAAGCTTCAAGAGTGAAGTTTATGAAAACCAAGAATAGATAA

Coding sequence (CDS)

ATGGGTTGCCTTGTTCTTTGCAGCTACATGCATGACGTGATCTACATTACGAGCTTTGTGCAAATAATGTCAATCCTCTCTGGGAAGTTTTGGTACACCTACCTTGTGATTCCAGCATTTGGGGTATACAAATCTTCTGGTTTAATTAAGAGTTTATTGTCGCACGGTTCAGAGGATGAACCTGAGGATGAGAAGACTCGCAAGAAGAGGGAAAAGATGGAGAAGAAAGCTTCAAGAGTGAAGTTTATGAAAACCAAGAATAGATAA

Protein sequence

MGCLVLCSYMHDVIYITSFVQIMSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEKTRKKREKMEKKASRVKFMKTKNR
BLAST of Cp4.1LG00g04480 vs. TrEMBL
Match: A0A0A0LH45_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G036710 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.2e-32
Identity = 76/83 (91.57%), Postives = 78/83 (93.98%), Query Frame = 1

Query: 6   LCSYMHDVIYITSFVQIMSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEK 65
           +C YMHDVIYITSFVQIMSILSGKFWYTYLVIP FGVYKSSG I+ LLS GSEDEPEDEK
Sbjct: 91  ICGYMHDVIYITSFVQIMSILSGKFWYTYLVIPGFGVYKSSGFIRGLLSQGSEDEPEDEK 150

Query: 66  TRKKREKMEKKASRVKFMKTKNR 89
           TRKKREKMEKKASRVKFMKTKNR
Sbjct: 151 TRKKREKMEKKASRVKFMKTKNR 173

BLAST of Cp4.1LG00g04480 vs. TrEMBL
Match: A0A061GWQ7_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_038477 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.0e-26
Identity = 65/83 (78.31%), Postives = 72/83 (86.75%), Query Frame = 1

Query: 6   LCSYMHDVIYITSFVQIMSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEK 65
           +C Y+HDVIYITSFVQ+MSI+S KFWYTYLVIPAFG YKS G I+  LS GSE E EDEK
Sbjct: 91  ICGYLHDVIYITSFVQLMSIISEKFWYTYLVIPAFGAYKSFGFIRGFLSQGSEGEVEDEK 150

Query: 66  TRKKREKMEKKASRVKFMKTKNR 89
           TRKKREKMEKKASR KF+KT+NR
Sbjct: 151 TRKKREKMEKKASRPKFVKTRNR 173

BLAST of Cp4.1LG00g04480 vs. TrEMBL
Match: A0A061GNW1_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_038477 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.0e-26
Identity = 65/83 (78.31%), Postives = 72/83 (86.75%), Query Frame = 1

Query: 6   LCSYMHDVIYITSFVQIMSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEK 65
           +C Y+HDVIYITSFVQ+MSI+S KFWYTYLVIPAFG YKS G I+  LS GSE E EDEK
Sbjct: 74  ICGYLHDVIYITSFVQLMSIISEKFWYTYLVIPAFGAYKSFGFIRGFLSQGSEGEVEDEK 133

Query: 66  TRKKREKMEKKASRVKFMKTKNR 89
           TRKKREKMEKKASR KF+KT+NR
Sbjct: 134 TRKKREKMEKKASRPKFVKTRNR 156

BLAST of Cp4.1LG00g04480 vs. TrEMBL
Match: A0A061GPU8_THECC (Uncharacterized protein isoform 3 OS=Theobroma cacao GN=TCM_038477 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.0e-26
Identity = 65/83 (78.31%), Postives = 72/83 (86.75%), Query Frame = 1

Query: 6   LCSYMHDVIYITSFVQIMSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEK 65
           +C Y+HDVIYITSFVQ+MSI+S KFWYTYLVIPAFG YKS G I+  LS GSE E EDEK
Sbjct: 56  ICGYLHDVIYITSFVQLMSIISEKFWYTYLVIPAFGAYKSFGFIRGFLSQGSEGEVEDEK 115

Query: 66  TRKKREKMEKKASRVKFMKTKNR 89
           TRKKREKMEKKASR KF+KT+NR
Sbjct: 116 TRKKREKMEKKASRPKFVKTRNR 138

BLAST of Cp4.1LG00g04480 vs. TrEMBL
Match: A0A061GQW3_THECC (Uncharacterized protein isoform 4 (Fragment) OS=Theobroma cacao GN=TCM_038477 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.0e-26
Identity = 65/83 (78.31%), Postives = 72/83 (86.75%), Query Frame = 1

Query: 6   LCSYMHDVIYITSFVQIMSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEK 65
           +C Y+HDVIYITSFVQ+MSI+S KFWYTYLVIPAFG YKS G I+  LS GSE E EDEK
Sbjct: 93  ICGYLHDVIYITSFVQLMSIISEKFWYTYLVIPAFGAYKSFGFIRGFLSQGSEGEVEDEK 152

Query: 66  TRKKREKMEKKASRVKFMKTKNR 89
           TRKKREKMEKKASR KF+KT+NR
Sbjct: 153 TRKKREKMEKKASRPKFVKTRNR 175

BLAST of Cp4.1LG00g04480 vs. TAIR10
Match: AT4G30500.1 (AT4G30500.1 Protein of unknown function (DUF788))

HSP 1 Score: 119.0 bits (297), Expect = 1.5e-27
Identity = 61/83 (73.49%), Postives = 72/83 (86.75%), Query Frame = 1

Query: 6   LCSYMHDVIYITSFVQIMSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEK 65
           +C Y+HDV+YIT FVQ+ SI+SGKFWY YLVIPAFG YK+SGLIK LLSHGSE   EDEK
Sbjct: 91  MCGYLHDVLYITCFVQVGSIISGKFWYAYLVIPAFGAYKASGLIKGLLSHGSEGGVEDEK 150

Query: 66  TRKKREKMEKKASRVKFMKTKNR 89
           TRKKREKME+KASR + +KT++R
Sbjct: 151 TRKKREKMERKASRGQVVKTRSR 173

BLAST of Cp4.1LG00g04480 vs. TAIR10
Match: AT2G23940.1 (AT2G23940.1 Protein of unknown function (DUF788))

HSP 1 Score: 114.0 bits (284), Expect = 4.7e-26
Identity = 58/83 (69.88%), Postives = 71/83 (85.54%), Query Frame = 1

Query: 6   LCSYMHDVIYITSFVQIMSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEK 65
           +C Y+HDVIYIT FVQ+ SI++GKFWYTYLVIPAFGVYK+SGLI+  +S GSE   EDEK
Sbjct: 91  ICGYLHDVIYITCFVQLASIITGKFWYTYLVIPAFGVYKASGLIRGFMSQGSEGGVEDEK 150

Query: 66  TRKKREKMEKKASRVKFMKTKNR 89
           +RKKREKME+KASR + +KT+ R
Sbjct: 151 SRKKREKMERKASRGQVVKTRTR 173

BLAST of Cp4.1LG00g04480 vs. NCBI nr
Match: gi|659069921|ref|XP_008452429.1| (PREDICTED: transmembrane protein 208 homolog [Cucumis melo])

HSP 1 Score: 147.5 bits (371), Expect = 1.1e-32
Identity = 77/83 (92.77%), Postives = 80/83 (96.39%), Query Frame = 1

Query: 6   LCSYMHDVIYITSFVQIMSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEK 65
           +C YMHDVIYITSFVQIMSILSGKFWYTYLVIPAFGVYKSSGLI+ LLS GSEDEPEDEK
Sbjct: 91  ICGYMHDVIYITSFVQIMSILSGKFWYTYLVIPAFGVYKSSGLIRGLLSQGSEDEPEDEK 150

Query: 66  TRKKREKMEKKASRVKFMKTKNR 89
           TRKKREKMEKKASRVKF+KTKNR
Sbjct: 151 TRKKREKMEKKASRVKFVKTKNR 173

BLAST of Cp4.1LG00g04480 vs. NCBI nr
Match: gi|449453938|ref|XP_004144713.1| (PREDICTED: transmembrane protein 208 homolog [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 3.2e-32
Identity = 76/83 (91.57%), Postives = 78/83 (93.98%), Query Frame = 1

Query: 6   LCSYMHDVIYITSFVQIMSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEK 65
           +C YMHDVIYITSFVQIMSILSGKFWYTYLVIP FGVYKSSG I+ LLS GSEDEPEDEK
Sbjct: 91  ICGYMHDVIYITSFVQIMSILSGKFWYTYLVIPGFGVYKSSGFIRGLLSQGSEDEPEDEK 150

Query: 66  TRKKREKMEKKASRVKFMKTKNR 89
           TRKKREKMEKKASRVKFMKTKNR
Sbjct: 151 TRKKREKMEKKASRVKFMKTKNR 173

BLAST of Cp4.1LG00g04480 vs. NCBI nr
Match: gi|590579956|ref|XP_007013932.1| (Uncharacterized protein isoform 3 [Theobroma cacao])

HSP 1 Score: 125.2 bits (313), Expect = 5.8e-26
Identity = 65/83 (78.31%), Postives = 72/83 (86.75%), Query Frame = 1

Query: 6   LCSYMHDVIYITSFVQIMSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEK 65
           +C Y+HDVIYITSFVQ+MSI+S KFWYTYLVIPAFG YKS G I+  LS GSE E EDEK
Sbjct: 56  ICGYLHDVIYITSFVQLMSIISEKFWYTYLVIPAFGAYKSFGFIRGFLSQGSEGEVEDEK 115

Query: 66  TRKKREKMEKKASRVKFMKTKNR 89
           TRKKREKMEKKASR KF+KT+NR
Sbjct: 116 TRKKREKMEKKASRPKFVKTRNR 138

BLAST of Cp4.1LG00g04480 vs. NCBI nr
Match: gi|590579953|ref|XP_007013931.1| (Uncharacterized protein isoform 2 [Theobroma cacao])

HSP 1 Score: 125.2 bits (313), Expect = 5.8e-26
Identity = 65/83 (78.31%), Postives = 72/83 (86.75%), Query Frame = 1

Query: 6   LCSYMHDVIYITSFVQIMSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEK 65
           +C Y+HDVIYITSFVQ+MSI+S KFWYTYLVIPAFG YKS G I+  LS GSE E EDEK
Sbjct: 74  ICGYLHDVIYITSFVQLMSIISEKFWYTYLVIPAFGAYKSFGFIRGFLSQGSEGEVEDEK 133

Query: 66  TRKKREKMEKKASRVKFMKTKNR 89
           TRKKREKMEKKASR KF+KT+NR
Sbjct: 134 TRKKREKMEKKASRPKFVKTRNR 156

BLAST of Cp4.1LG00g04480 vs. NCBI nr
Match: gi|590579950|ref|XP_007013930.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 125.2 bits (313), Expect = 5.8e-26
Identity = 65/83 (78.31%), Postives = 72/83 (86.75%), Query Frame = 1

Query: 6   LCSYMHDVIYITSFVQIMSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEK 65
           +C Y+HDVIYITSFVQ+MSI+S KFWYTYLVIPAFG YKS G I+  LS GSE E EDEK
Sbjct: 91  ICGYLHDVIYITSFVQLMSIISEKFWYTYLVIPAFGAYKSFGFIRGFLSQGSEGEVEDEK 150

Query: 66  TRKKREKMEKKASRVKFMKTKNR 89
           TRKKREKMEKKASR KF+KT+NR
Sbjct: 151 TRKKREKMEKKASRPKFVKTRNR 173

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LH45_CUCSA2.2e-3291.57Uncharacterized protein OS=Cucumis sativus GN=Csa_2G036710 PE=4 SV=1[more]
A0A061GWQ7_THECC4.0e-2678.31Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_038477 PE=4 SV=1[more]
A0A061GNW1_THECC4.0e-2678.31Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_038477 PE=4 SV=1[more]
A0A061GPU8_THECC4.0e-2678.31Uncharacterized protein isoform 3 OS=Theobroma cacao GN=TCM_038477 PE=4 SV=1[more]
A0A061GQW3_THECC4.0e-2678.31Uncharacterized protein isoform 4 (Fragment) OS=Theobroma cacao GN=TCM_038477 PE... [more]
Match NameE-valueIdentityDescription
AT4G30500.11.5e-2773.49 Protein of unknown function (DUF788)[more]
AT2G23940.14.7e-2669.88 Protein of unknown function (DUF788)[more]
Match NameE-valueIdentityDescription
gi|659069921|ref|XP_008452429.1|1.1e-3292.77PREDICTED: transmembrane protein 208 homolog [Cucumis melo][more]
gi|449453938|ref|XP_004144713.1|3.2e-3291.57PREDICTED: transmembrane protein 208 homolog [Cucumis sativus][more]
gi|590579956|ref|XP_007013932.1|5.8e-2678.31Uncharacterized protein isoform 3 [Theobroma cacao][more]
gi|590579953|ref|XP_007013931.1|5.8e-2678.31Uncharacterized protein isoform 2 [Theobroma cacao][more]
gi|590579950|ref|XP_007013930.1|5.8e-2678.31Uncharacterized protein isoform 1 [Theobroma cacao][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008506SND2/TMEM208
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG00g04480.1Cp4.1LG00g04480.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008506Protein of unknown function DUF788, TMEM208PANTHERPTHR13505FAMILY NOT NAMEDcoord: 6..88
score: 1.5
IPR008506Protein of unknown function DUF788, TMEM208PFAMPF05620DUF788coord: 6..77
score: 4.6
NoneNo IPR availablePANTHERPTHR13505:SF7TRANSMEMBRANE PROTEIN 208coord: 6..88
score: 1.5

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG00g04480Cucurbita pepo (Zucchini)cpecpeB010
Cp4.1LG00g04480Cucurbita maxima (Rimu)cmacpeB456
Cp4.1LG00g04480Cucurbita moschata (Rifu)cmocpeB417
Cp4.1LG00g04480Wild cucumber (PI 183967)cpecpiB006
Cp4.1LG00g04480Cucumber (Chinese Long) v2cpecuB008
Cp4.1LG00g04480Bottle gourd (USVL1VR-Ls)cpelsiB005
Cp4.1LG00g04480Silver-seed gourdcarcpeB0731
Cp4.1LG00g04480Silver-seed gourdcarcpeB0799
Cp4.1LG00g04480Cucumber (Chinese Long) v3cpecucB0009
Cp4.1LG00g04480Wax gourdcpewgoB0008