Cp4.1LG00g04150 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG00g04150
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	BnaC07g41700D protein
Location	Cp4.1LG00 : 15545803 .. 15546583 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGATAACGACAGCGATGGAGAAACTATCTTTTGCAGGCTCAAAAATTTCTACACAACCATTGATAAAATGGAAGGTGACGGTTGCTAACCAATTGAGTCCAGGTCACACTGCAAATCAAAAGATGATGATTTGGGTGATCACATGCTACAAGTAGGTCAAAGTTTCCCGTGGAAATTCAAAGTAAATTTTTTTTAGCAAACACCCTTTTCTAGTGTAATCTACTTACCTCATCTCCTACCATTTATAAATGTTTCATAATTGGTAAAAGATAATTACCAATAATATTTGGATGGGAATCAATCTCCTAGTAAGAAGGAAAAAGTAGGCCAAACTAAAATCACAACAAACCATTTGAGAGGTTGAGAAAAAAAAAAATGAATCTTGTGAGACATTGCTGCATCTTTTCATGTCTTCTAGTAATAATAGCGATGATGGGAATGTCATCATTAGCTCACCCAAAAGAGTATACGTCAGCATTGACTGAGTGGAACGTGACAATGATTAACAACTTGGATTTAGGCCATACCATGTTACTTCACTGCAAATCAAAAGATGACGACTTGAGTGATCATATGCTGCAAGTGGGACAAAGTTTCACGTAAAAATTTAGACACCTTTTTTTGGTGTAATCTAAGTACCTCGTTAAACAAACACGTGTTGATGGAAGTATTTTGGCCGAAGAAAAAGGACTGGCTTGGTGTTAGATGCAACTACCAGCTTTGCGTGTGTGTTGCTCAAGCGAATGACATTTATTTACAAGATCTTCCTCACAAAGTAATG

mRNA sequence

TGATAACGACAGCGATGGAGAAACTATCTTTTGCAGGCTCAAAAATTTCTACACAACCATTGATAAAATGGAAGGTGACGCGATGATGGGAATGTCATCATTAGCTCACCCAAAAGAGTATACGTCAGCATTGACTGAGTGGAACGTGACAATGATTAACAACTTGGATTTAGGCCATACCATGTTACTTCACTGCAAATCAAAAGATGACGACTTGAGTGATCATATGCTGCAAGTGGGACAAAGTTTCACTACCTCGTTAAACAAACACGTGTTGATGGAAGTATTTTGGCCGAAGAAAAAGGACTGGCTTGGTGTTAGATGCAACTACCAGCTTTGCGTGTGTGTTGCTCAAGCGAATGACATTTATTTACAAGATCTTCCTCACAAAGTAATG

Coding sequence (CDS)

ATGGAAGGTGACGCGATGATGGGAATGTCATCATTAGCTCACCCAAAAGAGTATACGTCAGCATTGACTGAGTGGAACGTGACAATGATTAACAACTTGGATTTAGGCCATACCATGTTACTTCACTGCAAATCAAAAGATGACGACTTGAGTGATCATATGCTGCAAGTGGGACAAAGTTTCACTACCTCGTTAAACAAACACGTGTTGATGGAAGTATTTTGGCCGAAGAAAAAGGACTGGCTTGGTGTTAGATGCAACTACCAGCTTTGCGTGTGTGTTGCTCAAGCGAATGACATTTATTTACAAGATCTTCCTCACAAAGTAATG

Protein sequence

MEGDAMMGMSSLAHPKEYTSALTEWNVTMINNLDLGHTMLLHCKSKDDDLSDHMLQVGQSFTTSLNKHVLMEVFWPKKKDWLGVRCNYQLCVCVAQANDIYLQDLPHKVM

Homology

[Close]

BLAST of Cp4.1LG00g04150 vs. TrEMBL
Match: M5VWE5_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022213mg PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.9e-10
Identity = 35/101 (34.65%), Postives = 53/101 (52.48%), Query Frame = 1


Query: 24  EWNVTMINNLDLGHTMLLHCKSKDDDLSDHMLQVGQSFTTSL-----------------N 83
           +W+V ++NNL  G T+  HCKSKDDDL +  L  G  F  S                   
Sbjct: 18  KWHVHVVNNLGAGKTLFAHCKSKDDDLGERNLAPGTEFNWSFKENFFGTTLYWCYMSTDQ 77

Query: 84  KHVLMEVFWPK-KKDWLGVRCNYQLCVCVAQANDIYLQDLP 107
           KH  ++VFW +    WL  RCN++ C+ +A+ + IY++ +P
Sbjct: 78  KHAALDVFWVEGDHSWLQYRCNWKDCIWIAKDDGIYIKIIP 118

[Close]

BLAST of Cp4.1LG00g04150 vs. TrEMBL
Match: V4TTV3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024159mg PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.6e-10
Identity = 34/100 (34.00%), Postives = 52/100 (52.00%), Query Frame = 1


Query: 25  WNVTMINNLDLGHTMLLHCKSKDDDLSDHMLQVGQSFTTSLNKHV--------------- 84
           W+V ++NNL    T+L+HCKSKDDDL +H L  G  F     ++                
Sbjct: 35  WHVHVVNNLSNNQTLLVHCKSKDDDLGEHNLAAGTEFAWKFKENFFQTTLFWCYLKKQDK 94

Query: 85  ---LMEVFWPKKKDWLGVRCNYQLCVCVAQANDIYLQDLP 107
              +  VFW  K+D+   RC Y+ C+ +A+   IYL+++P
Sbjct: 95  FCNIFNVFW--KEDFFQFRCRYKNCIWIAKVEGIYLKNIP 132

[Close]

BLAST of Cp4.1LG00g04150 vs. TrEMBL
Match: A0A067FEN7_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g046903mg PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-09
Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 1


Query: 25  WNVTMINNLDLGHTMLLHCKSKDDDLSDHMLQVGQSFTTSLNKH---VLMEVFWPKKKDW 84
           W+V ++NNL    T+ LHCKSKDDDL +H L  G        ++     + VFW   +D+
Sbjct: 13  WHVHVVNNLSNNQTLFLHCKSKDDDLGEHKLTTGTESNWKFKENFFQTTLSVFW--NEDF 72

Query: 85  LGVRCNYQLCVCVAQANDIYLQDLP 107
              RC Y+ C+  A+   IYL+++P
Sbjct: 73  FQFRCRYKDCIWTAKDEGIYLKNIP 95

[Close]

BLAST of Cp4.1LG00g04150 vs. TrEMBL
Match: A0A0D2R2C1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G224300 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.1e-08
Identity = 35/99 (35.35%), Postives = 48/99 (48.48%), Query Frame = 1


Query: 25  WNVTMINNLDLGHTMLLHCKSKDDDLSDHMLQVGQSFTTSL-----------------NK 84
           W+V  +N+L    T+L+HCKS+DDDL  H L VG  F                     N 
Sbjct: 48  WHVHTVNDLSNNKTLLVHCKSRDDDLGIHNLTVGTEFYWKFRPRIFGGTLFWCYMAYDNL 107

Query: 85  HVLMEVFWPKKKDWLGVRCNYQLCVCVAQANDIYLQDLP 107
           H   +VFW      L  +CNY  C  +A+ + IYL+D+P
Sbjct: 108 HAAFKVFWEDPS--LYAKCNYGDCYWIARDDGIYLKDIP 144

[Close]

BLAST of Cp4.1LG00g04150 vs. TrEMBL
Match: V4VUI1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022738mg PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-07
Identity = 36/100 (36.00%), Postives = 51/100 (51.00%), Query Frame = 1


Query: 25  WNVTMINNLDLGHTMLLHCKSKDDDLSDHMLQVGQS---------FTTSL---------N 84
           W+V ++NNL    T+ LHCKSKDDDL +H L  G           F T+L         N
Sbjct: 31  WHVHVVNNLSNNQTLFLHCKSKDDDLGEHKLTTGTESNWKFKENFFQTTLFWCHLRKPDN 90

Query: 85  KHVLMEVFWPKKKDWLGVRCNYQLCVCVAQANDIYLQDLP 107
                +VFW   +D+   RC Y+ C+  A+   IYL+++P
Sbjct: 91  FCNNFKVFW--NEDFFQFRCRYKDCIWTAKDEGIYLKNIP 128

[Close]

BLAST of Cp4.1LG00g04150 vs. TAIR10
Match: AT4G16295.1 (AT4G16295.1 S-protein homologue 1)

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-08
Identity = 30/98 (30.61%), Postives = 49/98 (50.00%), Query Frame = 1


Query: 22  LTEWNVTMINNLDLGHTMLLHCKSKDDDLSDHMLQVGQSFTTSL---------------- 81
           ++EW VT++N L  G T+ +HCKSK+DDL +  L+    F+ +                 
Sbjct: 38  ISEWQVTVVNGLTTGETLFIHCKSKEDDLGEINLKFRNRFSWNFGENMLHSTFFWCYMNK 97

Query: 82  -NKHVLMEVFWPKKKDWLGVRCNYQLCVCVAQANDIYL 103
            N H+ + VFW      L  RC ++ C+  A+ + +YL
Sbjct: 98  DNGHMNVNVFWDDV--ILFHRCGWKNCIWTAKTDGLYL 133

[Close]

BLAST of Cp4.1LG00g04150 vs. TAIR10
Match: AT4G29035.1 (AT4G29035.1 Plant self-incompatibility protein S1 family)

HSP 1 Score: 53.5 bits (127), Expect = 9.4e-08
Identity = 32/96 (33.33%), Postives = 52/96 (54.17%), Query Frame = 1


Query: 22  LTEWNVTMINNLDLGHTMLLHCKSKDDDLSDHMLQVGQSFTTSLNKHVL-MEVFW--PKK 81
           ++EW VT+ N L  G T+ +HCKSK++DL D  L+    F+ +  +++L   +FW    K
Sbjct: 38  ISEWQVTVANGLTTGETLFIHCKSKENDLGDINLKFLDRFSWNFGENMLHSTLFWCYMSK 97

Query: 82  KD--------WLGV----RCNYQLCVCVAQANDIYL 103
            D        W  V    RC+++ CV  A+ + +YL
Sbjct: 98  DDGHMNVKVFWDDVILFHRCDWKNCVWTAKNDGLYL 133

[Close]

BLAST of Cp4.1LG00g04150 vs. NCBI nr
Match: gi|659080970|ref|XP_008441078.1| (PREDICTED: uncharacterized protein LOC103485305 [Cucumis melo])

HSP 1 Score: 90.1 bits (222), Expect = 2.6e-15
Identity = 46/116 (39.66%), Postives = 62/116 (53.45%), Query Frame = 1


Query: 5   AMMGMSSLAHPKEYTSALTEWNVTMINNLDLGHTMLLHCKSKDDDLSDHMLQVGQSF--- 64
           AMMG S L   K      + W V + N L  G ++ +HCKSKD+DL +H L+V + F   
Sbjct: 20  AMMGESCLGGSKTMPP-FSSWKVVVFNQLSPGQSLTVHCKSKDNDLGEHSLRVSEKFSWK 79

Query: 65  ---------------TTSLNKHVLMEVFWPKKKDWLGVRCNYQLCVCVAQANDIYL 103
                          T+S  K V M+VFWP++ DWL  RCNY  C+ VAQ + IY+
Sbjct: 80  FKENLFSTTRFWCGLTSSSKKTVTMDVFWPERHDWLAYRCNYATCIWVAQDDGIYI 134

[Close]

BLAST of Cp4.1LG00g04150 vs. NCBI nr
Match: gi|659109767|ref|XP_008454866.1| (PREDICTED: uncharacterized protein LOC103495175 [Cucumis melo])

HSP 1 Score: 83.6 bits (205), Expect = 2.4e-13
Identity = 39/108 (36.11%), Postives = 59/108 (54.63%), Query Frame = 1


Query: 17  EYTSALTEWNVTMINNLDLGHTMLLHCKSKDDDLSDHMLQVGQSFT-------------- 76
           +YT + ++W V +IN L     +  HCKSKDD+L  H ++VGQ++               
Sbjct: 6   KYTPSFSKWTVAIINELSSNKQLFAHCKSKDDNLGYHTVEVGQTYQWQFKENALQTTLFW 65

Query: 77  ----TSLNKHVLMEVFWPKKKDWLGVRCNYQLCVCVAQANDIYLQDLP 107
               T  N HV  EVFW +K +WL  RCN++ C+  A+ + IYL ++P
Sbjct: 66  CTLWTPTNLHVTFEVFWREKGEWLRSRCNFRACMWYARDDGIYLLNIP 113

[Close]

BLAST of Cp4.1LG00g04150 vs. NCBI nr
Match: gi|1009148886|ref|XP_015892179.1| (PREDICTED: uncharacterized protein LOC107426492 [Ziziphus jujuba])

HSP 1 Score: 78.6 bits (192), Expect = 7.7e-12
Identity = 35/103 (33.98%), Postives = 58/103 (56.31%), Query Frame = 1


Query: 22  LTEWNVTMINNLDLGHTMLLHCKSKDDDLSDHMLQVGQSFTTSL---------------- 81
           L ++N+ ++N L  G  + +HC+SKDDDL +H L  G  FT +                 
Sbjct: 37  LYKYNMFIVNGLSSGRDLFIHCQSKDDDLGEHNLTTGSHFTWTFRTNFWGTTRFWCYARR 96

Query: 82  -NKHVLMEVFWPKKK-DWLGVRCNYQLCVCVAQANDIYLQDLP 107
            N+H   +VFWP+K+  WL  RC+Y++C+  A+ +  YL+++P
Sbjct: 97  DNEHAAFDVFWPEKRHKWLETRCDYKVCIWTAKDDGFYLRNVP 139

[Close]

BLAST of Cp4.1LG00g04150 vs. NCBI nr
Match: gi|645260261|ref|XP_008235747.1| (PREDICTED: uncharacterized protein LOC103334546 [Prunus mume])

HSP 1 Score: 73.2 bits (178), Expect = 3.3e-10
Identity = 35/100 (35.00%), Postives = 53/100 (53.00%), Query Frame = 1


Query: 25  WNVTMINNLDLGHTMLLHCKSKDDDLSDHMLQVGQSFTTSL-----------------NK 84
           W+V ++NNL  G T+  HCKSKDDDL +  L  G  F  S                   K
Sbjct: 35  WHVHVVNNLSAGQTLFAHCKSKDDDLGERNLAPGTEFNWSFKENFSGTTLYWCYMSTGQK 94

Query: 85  HVLMEVFWPK-KKDWLGVRCNYQLCVCVAQANDIYLQDLP 107
           H  ++VFW + +  WL  RCN++ C+ +A+ + IY++ +P
Sbjct: 95  HAALDVFWVEGEHSWLQYRCNWKDCIWIAKDDGIYIKIIP 134

[Close]

BLAST of Cp4.1LG00g04150 vs. NCBI nr
Match: gi|595792631|ref|XP_007200064.1| (hypothetical protein PRUPE_ppa022213mg, partial [Prunus persica])

HSP 1 Score: 72.4 bits (176), Expect = 5.5e-10
Identity = 35/101 (34.65%), Postives = 53/101 (52.48%), Query Frame = 1


Query: 24  EWNVTMINNLDLGHTMLLHCKSKDDDLSDHMLQVGQSFTTSL-----------------N 83
           +W+V ++NNL  G T+  HCKSKDDDL +  L  G  F  S                   
Sbjct: 18  KWHVHVVNNLGAGKTLFAHCKSKDDDLGERNLAPGTEFNWSFKENFFGTTLYWCYMSTDQ 77

Query: 84  KHVLMEVFWPK-KKDWLGVRCNYQLCVCVAQANDIYLQDLP 107
           KH  ++VFW +    WL  RCN++ C+ +A+ + IY++ +P
Sbjct: 78  KHAALDVFWVEGDHSWLQYRCNWKDCIWIAKDDGIYIKIIP 118

The following BLAST results are available for this feature:

BLAST of Cp4.1LG00g04150 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG00g04150 vs. TrEMBL


Match Name	E-value	Identity	Description
M5VWE5_PRUPE	3.9e-10	34.65	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022213mg PE=4 S...	[more]
V4TTV3_9ROSI	8.6e-10	34.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024159mg PE=4 SV=1	[more]
A0A067FEN7_CITSI	2.5e-09	37.65	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g046903mg PE=4 S...	[more]
A0A0D2R2C1_GOSRA	8.1e-08	35.35	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G224300 PE=4 SV=1	[more]
V4VUI1_9ROSI	1.4e-07	36.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022738mg PE=4 SV=1	[more]

BLAST of Cp4.1LG00g04150 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16295.1	1.5e-08	30.61	S-protein homologue 1	[more]
AT4G29035.1	9.4e-08	33.33	Plant self-incompatibility protein S1 family	[more]

BLAST of Cp4.1LG00g04150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659080970\|ref\|XP_008441078.1\|	2.6e-15	39.66	PREDICTED: uncharacterized protein LOC103485305 [Cucumis melo]	[more]
gi\|659109767\|ref\|XP_008454866.1\|	2.4e-13	36.11	PREDICTED: uncharacterized protein LOC103495175 [Cucumis melo]	[more]
gi\|1009148886\|ref\|XP_015892179.1\|	7.7e-12	33.98	PREDICTED: uncharacterized protein LOC107426492 [Ziziphus jujuba]	[more]
gi\|645260261\|ref\|XP_008235747.1\|	3.3e-10	35.00	PREDICTED: uncharacterized protein LOC103334546 [Prunus mume]	[more]
gi\|595792631\|ref\|XP_007200064.1\|	5.5e-10	34.65	hypothetical protein PRUPE_ppa022213mg, partial [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010264	Self-incomp_S1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG00g04150.1	Cp4.1LG00g04150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 27..72 score: 6.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG00g04150	Cucurbita pepo (Zucchini)	cpecpeB015
Cp4.1LG00g04150	Cucurbita pepo (Zucchini)	cpecpeB000
Cp4.1LG00g04150	Cucumber (Gy14) v1	cgycpeB0350
Cp4.1LG00g04150	Cucurbita maxima (Rimu)	cmacpeB165
Cp4.1LG00g04150	Cucurbita maxima (Rimu)	cmacpeB760
Cp4.1LG00g04150	Cucurbita moschata (Rifu)	cmocpeB141
Cp4.1LG00g04150	Cucurbita moschata (Rifu)	cmocpeB714
Cp4.1LG00g04150	Wild cucumber (PI 183967)	cpecpiB005
Cp4.1LG00g04150	Cucumber (Chinese Long) v2	cpecuB007
Cp4.1LG00g04150	Bottle gourd (USVL1VR-Ls)	cpelsiB004
Cp4.1LG00g04150	Watermelon (Charleston Gray)	cpewcgB010
Cp4.1LG00g04150	Watermelon (97103) v1	cpewmB016
Cp4.1LG00g04150	Melon (DHL92) v3.5.1	cpemeB009
Cp4.1LG00g04150	Cucumber (Gy14) v2	cgybcpeB152
Cp4.1LG00g04150	Melon (DHL92) v3.6.1	cpemedB011
Cp4.1LG00g04150	Silver-seed gourd	carcpeB1003
Cp4.1LG00g04150	Cucumber (Chinese Long) v3	cpecucB0007
Cp4.1LG00g04150	Wax gourd	cpewgoB0007