Cp4.1LG00g04140 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG00g04140
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG00 : 15339248 .. 15339457 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAGCAAAAGTAGCAGCGGTGGTAGCAAAAGCAACAACGGCAGCGCTGGCCAAGCTCATAACTCCACAAGAAGTGGTAGCAATAGCTCTGAGAAGATGGTTGCTCCGGGGAGTGGAGGAGCTGCTCATATCTCTCGAGATGCATTTGAGAGTAATCCTCAGGGTTATTTTGCTAACCTCCATGCAGCTGAAAAGAGTCAAAAGTAG

mRNA sequence

ATGGATAGCAAAAGTAGCAGCGGTGGTAGCAAAAGCAACAACGGCAGCGCTGGCCAAGCTCATAACTCCACAAGAAGTGGTAGCAATAGCTCTGAGAAGATGGTTGCTCCGGGGAGTGGAGGAGCTGCTCATATCTCTCGAGATGCATTTGAGAGTAATCCTCAGGGTTATTTTGCTAACCTCCATGCAGCTGAAAAGAGTCAAAAGTAG

Coding sequence (CDS)

ATGGATAGCAAAAGTAGCAGCGGTGGTAGCAAAAGCAACAACGGCAGCGCTGGCCAAGCTCATAACTCCACAAGAAGTGGTAGCAATAGCTCTGAGAAGATGGTTGCTCCGGGGAGTGGAGGAGCTGCTCATATCTCTCGAGATGCATTTGAGAGTAATCCTCAGGGTTATTTTGCTAACCTCCATGCAGCTGAAAAGAGTCAAAAGTAG

Protein sequence

MDSKSSSGGSKSNNGSAGQAHNSTRSGSNSSEKMVAPGSGGAAHISRDAFESNPQGYFANLHAAEKSQK
Homology
[Close]
BLAST of Cp4.1LG00g04140 vs. TrEMBL
Match: A0A0D2VDF5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G136100 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-06
Identity = 39/67 (58.21%), Postives = 46/67 (68.66%), Query Frame = 1 

Query: 3  SKSSSGGSKSNNGSAGQAHNSTRSGSNSSEKMVAPGSGGAAHISRDAFESNPQGYFANLH 62
          SK   GGS   +G+ G    S + G  +S  MVAPGSGGAA ISR AFESNPQGYFA+LH
Sbjct: 12 SKGGCGGSGGGSGNVGGGSTS-KGGGGASGMMVAPGSGGAAIISRGAFESNPQGYFADLH 71

Query: 63 AAEKSQK 70
          ++EK  K
Sbjct: 72 SSEKGNK 77

[Close]
BLAST of Cp4.1LG00g04140 vs. TrEMBL
Match: A0A0D2VJB7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G135400 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-06
Identity = 39/67 (58.21%), Postives = 45/67 (67.16%), Query Frame = 1 

Query: 3  SKSSSGGSKSNNGSAGQAHNSTRSGSNSSEKMVAPGSGGAAHISRDAFESNPQGYFANLH 62
          SK   GGS   +G+ G    S + G  +S  MVAPGSGGAA ISR AFESNPQGYFA LH
Sbjct: 12 SKGGCGGSGGGSGNVGGGSTS-KGGGGASGMMVAPGSGGAAIISRGAFESNPQGYFAGLH 71

Query: 63 AAEKSQK 70
          ++EK  K
Sbjct: 72 SSEKGNK 77

[Close]
BLAST of Cp4.1LG00g04140 vs. TrEMBL
Match: A0A0D2W5V4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G135800 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.7e-06
Identity = 39/70 (55.71%), Postives = 44/70 (62.86%), Query Frame = 1 

Query: 6  SSGGSKSNNGSAGQAHNSTRSGSNS------SEKMVAPGSGGAAHISRDAFESNPQGYFA 65
          S GG K   G +G    + R GS S      S  +VAPGSGGAA ISR AFESNPQGYFA
Sbjct: 8  SGGGGKGGCGGSGGGSGNVRGGSTSKGGGGASGMIVAPGSGGAAIISRGAFESNPQGYFA 67

Query: 66 NLHAAEKSQK 70
           LH++EK  K
Sbjct: 68 GLHSSEKGNK 77

[Close]
BLAST of Cp4.1LG00g04140 vs. TrEMBL
Match: A0A0D2VDF1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G135600 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.7e-06
Identity = 38/67 (56.72%), Postives = 45/67 (67.16%), Query Frame = 1 

Query: 3  SKSSSGGSKSNNGSAGQAHNSTRSGSNSSEKMVAPGSGGAAHISRDAFESNPQGYFANLH 62
          SK   GGS   +G+ G    S + G  +S  MVAPGSGGAA ISR AFESNP+GYFA LH
Sbjct: 12 SKGGCGGSGGGSGNVGGGSTS-KGGGGASGMMVAPGSGGAAIISRGAFESNPKGYFAGLH 71

Query: 63 AAEKSQK 70
          ++EK  K
Sbjct: 72 SSEKGNK 77

[Close]
BLAST of Cp4.1LG00g04140 vs. TrEMBL
Match: A0A0D2SDQ1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G135700 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.7e-06
Identity = 38/67 (56.72%), Postives = 45/67 (67.16%), Query Frame = 1 

Query: 3  SKSSSGGSKSNNGSAGQAHNSTRSGSNSSEKMVAPGSGGAAHISRDAFESNPQGYFANLH 62
          SK   GGS   +G+ G    S + G  +S  MVAPGSGGAA ISR AFESNP+GYFA LH
Sbjct: 12 SKGGCGGSGGGSGNVGGGSTS-KGGGGASGMMVAPGSGGAAIISRGAFESNPKGYFAGLH 71

Query: 63 AAEKSQK 70
          ++EK  K
Sbjct: 72 SSEKGNK 77

[Close]
BLAST of Cp4.1LG00g04140 vs. TAIR10
Match: AT5G61412.1 (AT5G61412.1 unknown protein)

HSP 1 Score: 53.1 bits (126), Expect = 7.7e-08
Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 1 

Query: 7  SGGSKSNNGSAGQAHNSTRSGSNSSE--KMVAPGSGGAAHISRDAFESNPQGYFANLHAA 66
          SGG+   +G  GQ+    +SG   +    MVAPG+ G A+ISR  FESNPQGYF+NLH +
Sbjct: 13 SGGAGGKSGGGGQSSGGGKSGGGGAGAGNMVAPGTNGGAYISRGGFESNPQGYFSNLHGS 72

Query: 67 EKSQK 70
           +S+K
Sbjct: 73 GQSKK 77

[Close]
BLAST of Cp4.1LG00g04140 vs. TAIR10
Match: AT4G33145.1 (AT4G33145.1 unknown protein)

HSP 1 Score: 47.4 bits (111), Expect = 4.2e-06
Identity = 27/54 (50.00%), Postives = 35/54 (64.81%), Query Frame = 1 

Query: 16 SAGQAHNSTRSGSNSSEKMVAPGSGGAAHISRDAFESNPQGYFANLHAAEKSQK 70
          S  Q+  S+   +  +  MVAPGSGG+A I R AFE+N + YF NLHA EK+ K
Sbjct: 11 SVAQSSGSSSGTAPGAGNMVAPGSGGSAQIPRAAFEANSKAYFDNLHAKEKANK 64

[Close]
BLAST of Cp4.1LG00g04140 vs. NCBI nr
Match: gi|823258227|ref|XP_012461818.1| (PREDICTED: probable H/ACA ribonucleoprotein complex subunit 1 [Gossypium raimondii])

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-06
Identity = 39/67 (58.21%), Postives = 46/67 (68.66%), Query Frame = 1 

Query: 3  SKSSSGGSKSNNGSAGQAHNSTRSGSNSSEKMVAPGSGGAAHISRDAFESNPQGYFANLH 62
          SK   GGS   +G+ G    S + G  +S  MVAPGSGGAA ISR AFESNPQGYFA+LH
Sbjct: 12 SKGGCGGSGGGSGNVGGGSTS-KGGGGASGMMVAPGSGGAAIISRGAFESNPQGYFADLH 71

Query: 63 AAEKSQK 70
          ++EK  K
Sbjct: 72 SSEKGNK 77

[Close]
BLAST of Cp4.1LG00g04140 vs. NCBI nr
Match: gi|823257101|ref|XP_012461185.1| (PREDICTED: loricrin-like [Gossypium raimondii])

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-06
Identity = 39/67 (58.21%), Postives = 45/67 (67.16%), Query Frame = 1 

Query: 3  SKSSSGGSKSNNGSAGQAHNSTRSGSNSSEKMVAPGSGGAAHISRDAFESNPQGYFANLH 62
          SK   GGS   +G+ G    S + G  +S  MVAPGSGGAA ISR AFESNPQGYFA LH
Sbjct: 12 SKGGCGGSGGGSGNVGGGSTS-KGGGGASGMMVAPGSGGAAIISRGAFESNPQGYFAGLH 71

Query: 63 AAEKSQK 70
          ++EK  K
Sbjct: 72 SSEKGNK 77

[Close]
BLAST of Cp4.1LG00g04140 vs. NCBI nr
Match: gi|763814419|gb|KJB81271.1| (hypothetical protein B456_013G135600 [Gossypium raimondii])

HSP 1 Score: 58.2 bits (139), Expect = 6.8e-06
Identity = 38/67 (56.72%), Postives = 45/67 (67.16%), Query Frame = 1 

Query: 3  SKSSSGGSKSNNGSAGQAHNSTRSGSNSSEKMVAPGSGGAAHISRDAFESNPQGYFANLH 62
          SK   GGS   +G+ G    S + G  +S  MVAPGSGGAA ISR AFESNP+GYFA LH
Sbjct: 12 SKGGCGGSGGGSGNVGGGSTS-KGGGGASGMMVAPGSGGAAIISRGAFESNPKGYFAGLH 71

Query: 63 AAEKSQK 70
          ++EK  K
Sbjct: 72 SSEKGNK 77

[Close]
BLAST of Cp4.1LG00g04140 vs. NCBI nr
Match: gi|763814420|gb|KJB81272.1| (hypothetical protein B456_013G135700 [Gossypium raimondii])

HSP 1 Score: 58.2 bits (139), Expect = 6.8e-06
Identity = 38/67 (56.72%), Postives = 45/67 (67.16%), Query Frame = 1 

Query: 3  SKSSSGGSKSNNGSAGQAHNSTRSGSNSSEKMVAPGSGGAAHISRDAFESNPQGYFANLH 62
          SK   GGS   +G+ G    S + G  +S  MVAPGSGGAA ISR AFESNP+GYFA LH
Sbjct: 12 SKGGCGGSGGGSGNVGGGSTS-KGGGGASGMMVAPGSGGAAIISRGAFESNPKGYFAGLH 71

Query: 63 AAEKSQK 70
          ++EK  K
Sbjct: 72 SSEKGNK 77

[Close]
BLAST of Cp4.1LG00g04140 vs. NCBI nr
Match: gi|763814421|gb|KJB81273.1| (hypothetical protein B456_013G135800 [Gossypium raimondii])

HSP 1 Score: 58.2 bits (139), Expect = 6.8e-06
Identity = 39/70 (55.71%), Postives = 44/70 (62.86%), Query Frame = 1 

Query: 6  SSGGSKSNNGSAGQAHNSTRSGSNS------SEKMVAPGSGGAAHISRDAFESNPQGYFA 65
          S GG K   G +G    + R GS S      S  +VAPGSGGAA ISR AFESNPQGYFA
Sbjct: 8  SGGGGKGGCGGSGGGSGNVRGGSTSKGGGGASGMIVAPGSGGAAIISRGAFESNPQGYFA 67

Query: 66 NLHAAEKSQK 70
           LH++EK  K
Sbjct: 68 GLHSSEKGNK 77

The following BLAST results are available for this feature:
BLAST of Cp4.1LG00g04140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG00g04140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2VDF5_GOSRA1.2e-0658.21Uncharacterized protein OS=Gossypium raimondii GN=B456_013G136100 PE=4 SV=1[more]
A0A0D2VJB7_GOSRA1.6e-0658.21Uncharacterized protein OS=Gossypium raimondii GN=B456_013G135400 PE=4 SV=1[more]
A0A0D2W5V4_GOSRA4.7e-0655.71Uncharacterized protein OS=Gossypium raimondii GN=B456_013G135800 PE=4 SV=1[more]
A0A0D2VDF1_GOSRA4.7e-0656.72Uncharacterized protein OS=Gossypium raimondii GN=B456_013G135600 PE=4 SV=1[more]
A0A0D2SDQ1_GOSRA4.7e-0656.72Uncharacterized protein OS=Gossypium raimondii GN=B456_013G135700 PE=4 SV=1[more]
BLAST of Cp4.1LG00g04140 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G61412.17.7e-0849.23 unknown protein[more]
AT4G33145.14.2e-0650.00 unknown protein[more]
BLAST of Cp4.1LG00g04140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|823258227|ref|XP_012461818.1|1.8e-0658.21PREDICTED: probable H/ACA ribonucleoprotein complex subunit 1 [Gossypium raimond... [more]
gi|823257101|ref|XP_012461185.1|2.3e-0658.21PREDICTED: loricrin-like [Gossypium raimondii][more]
gi|763814419|gb|KJB81271.1|6.8e-0656.72hypothetical protein B456_013G135600 [Gossypium raimondii][more]
gi|763814420|gb|KJB81272.1|6.8e-0656.72hypothetical protein B456_013G135700 [Gossypium raimondii][more]
gi|763814421|gb|KJB81273.1|6.8e-0655.71hypothetical protein B456_013G135800 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG00g04140.1Cp4.1LG00g04140.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33333FAMILY NOT NAMEDcoord: 3..69
score: 8.9
NoneNo IPR availablePANTHERPTHR33333:SF5GLYCINE-RICH PROTEINcoord: 3..69
score: 8.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG00g04140Wax gourdcpewgoB0007
Cp4.1LG00g04140Cucurbita pepo (Zucchini)cpecpeB015
Cp4.1LG00g04140Cucurbita pepo (Zucchini)cpecpeB000
Cp4.1LG00g04140Cucumber (Gy14) v1cgycpeB0350
Cp4.1LG00g04140Cucurbita maxima (Rimu)cmacpeB165
Cp4.1LG00g04140Cucurbita maxima (Rimu)cmacpeB760
Cp4.1LG00g04140Cucurbita moschata (Rifu)cmocpeB141
Cp4.1LG00g04140Cucurbita moschata (Rifu)cmocpeB714
Cp4.1LG00g04140Wild cucumber (PI 183967)cpecpiB005
Cp4.1LG00g04140Cucumber (Chinese Long) v2cpecuB007
Cp4.1LG00g04140Bottle gourd (USVL1VR-Ls)cpelsiB004
Cp4.1LG00g04140Watermelon (Charleston Gray)cpewcgB010
Cp4.1LG00g04140Watermelon (97103) v1cpewmB016
Cp4.1LG00g04140Melon (DHL92) v3.5.1cpemeB009
Cp4.1LG00g04140Cucumber (Gy14) v2cgybcpeB152
Cp4.1LG00g04140Melon (DHL92) v3.6.1cpemedB011
Cp4.1LG00g04140Silver-seed gourdcarcpeB1003
Cp4.1LG00g04140Cucumber (Chinese Long) v3cpecucB0007