Cp4.1LG00g03600 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG00g03600
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Serine/arginine repetitive matrix 1
Location	Cp4.1LG00 : 13727698 .. 13733831 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAACAGTAAGAAATTCCCAATTGATGTCTCAATAAATCGTTTGAATCATACTTCCCAGATTAATCCAGAGTTGAGTTCAGTCCAATTCGTTTAGCCTCTGAGTCACCGGCTCTCTCTCGCCGTCGCTACCACCGCCGGGGAGCGTTCGGAGCTTCTTCTCTCCCTCAGTTTCTCCCCAACCCATTGCTTACAACAGACCCACCTTGGTTCCCACTACAAACCCTGAAAAATGTCCGGCGGGTTTTTCCGGGTAATGATCGAAATGAACTTATAACTTAGTTTTCAGCTCGTTTCTTGGTTCTTTGTTTAATCCCAAACGAATCAGCGTGTTTCTGAATCCATGTGTTCTTGGCTGGGCGAGTGTTTAGGGGTTTGGGTCTTGATTGGACAAGTTCTTTTTAGTAGCTTTCATTATCATTGTGAAGTTGAAGAACTTCCCAACTTATTGTTCTTGTTTATAAATTGTTCTTTCTCTTGTTAGATCAGAATTATCATTTCATGATTAATTTGTCTTAATTGTGGATTTTTCCTGTATGTTCTTGGTATTTTCTTGAGGTTTTTATGGACGTTTTTTACTAGGGTACGACTGCGGACCAAGACACTCGTTTTTCAAACAAGCAAGCAAAGCTGCTGAAGTCACAGAAGTTCCCTGCTGAACTAGACCAACTGGTTCGTTGTTTTCATCTTCAAATTATTATGTTGTGGTAATTGCAATTGAGTGAAATGTTAATCCGTACTGCTATGAATGTTAAACCATTTTAAGGGTTAATTAGTAATTCTTAAGCACGAGTGATGTGTCTTAGGTTGATACGACAAAGGTGAAGATGGACGTTATCAGGCCGTGGATTGCTACGAGGGCGACTGAGCTTCTTGGGTTTGAAGATGAAGTTCTTATTAACTTCATATATGGCCTTTTGGATAGCAAGGTAATTAAAAGATTTTTACTGTAGAATTGCTATTATTACTTGAGTTCGATAATTGTAAGGTGGGATATCGAACCATCAATGCTTAAGATGGTAATAAGTACGGAGCTATTCTTGTGTTCTCTCAGATTTTCTTATTATAATTGCATTATGTGATATATGGTCTAATATGGAACCAACCCAAGAGAAAGTTTTGATACTAAATGATAAGGAATCACTATAAGNTAAACACAAGAGAAAGTTTTGATACTAAATGATAAGGAATCACTATAAGGGAAGTAAGATTCAGATTACTTTGTTGATCGAATATCTCAAGGCAAGAACACTTGTTTGAGATTCGAATCACTCTACAAGCAAGATTGATCATATCGAGCTTGAATGATTCTACATGCAAACTAAACTACATAGAATTGCAAAGAAACTTAGCCATTGGCTAAAGGAAAGCACAAAGGCTCCTTTTACTACATCTTTTGATAATTTTGACAACATTTTCTTCCCATCTTCCCTGAAGTTTATGTTGCATGATTGATGTCTTGGTTCATATCATGGTCGTTCCGTTATAAGGCTATTGAATGGTGGTTCGGCTCAAGACATACTACACTAGTGGCATGTGGCAGATGAATTGAGGCTGTCCCAGTTTACTAAAATGCATACTCTATAGAAATGGTTTAAGCTGTACTGTTCAATTTGCATCAATTAACTGCTTTGGTACAGGAAGTAAATGGGAAGGAAGTTCAAATACAACTCACTGGGTTCATGGAAAAGAACACTGTGAAGTTTATGAAAGAGCTTTGGACACTACTTCTAAGTGCCCAGAAGAACGCCAGTGGTGTACCTCAACAATTTTTGGATGCCAAGGAAGAAGAAATTAGGAAGAAGAAGGTTTCTAGATTTCGTTAAGTTTTATTGTACGGCTAGTAGTTACGTGGATTGCTCGGTGTCTTTCAATTGATTAGTTCTCTTTGATTATTATAGGCAGAGACAGATTTTCTTGCAAATGAAATTCAGAAAAAGAGAGAGAAGGAACATAAAGAAATTGAGGAGCAGAGATCAAAGAATATGGTAAGTTGTTTATTTATGTTGGAGTTGTAATTGATTGAAATTGGTTTTTGGTCATAACTTTTCTCTGTATTTCCTCTGGCATTCAGCTAGCTTCTGCAATTATTTGGGTTCATGTCCTTTACCTCGAACTACTGTAGGACGATGGGGCTGAAAAGGTGGCCGATTTTGTATTGGAGCCTACGTCAATGAATCGTTCAGAGGACGAGGAAGAGGCTGAAAAGAGTAATGGTGTTAGGGGAAGAAGCAGGTAATGACTTGTGATAAACTGATTTTCAGATTTAGTGTGATGCTTTATTTTTGTACCGGTTAAGATATGATGGAGAAGCATTTTTGTGAGATCCTGCGTCGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGATGCGTTTTAAAACCTTGAGGGGAAGCCTAGAAGGAATTGCCCAAAGAGGACAATATCTGCTAGTGGAGCTGTTACAAATGGTATTAGAGCCAGACATCGGGTGGTGTGCCAGCAAGGACGCTGAGCTTCGAAGGGGGGTAGACATCAGGTGGTGTGCCAGCGAGGACATTGGGGCTTGAGAGACGGGGGAGGGGGGGGATGGATTGTGAGATCCCACGTTGGTTGGGGAGGAGAACGAAACATTCTTTATAAGTGTGTAAAAACCTATAAGTGTGTGAGAACGAAATATTTATGTGTACTATGGTGCTTTTCAGAATCTCCTAGTTGTACTAATGCTTTTGTCCTATTTTTTTTTAGTGATGGACACAAGTCAAGGAGCATGTCTCGATCACCTCAACGGCTACGAGACTCCTTTTCGCAAGAAAGATTATCTATTAGCCCACGTCGTAGGGACCATCGTGATTCATCCTCTCCTCGACATAGATCATCTGATTCAAGAAGGTCTAGATCTACTTCACATCGTAAATCTCTTTCTCCAGTAGTGCATCAGTTGCGGTCTCCTTCTCAACATAGTTCACCATCTCCTCATTGTAAATCACCACATCAACTATCTTCGTCTGGGCAACGTCGATCATCGTCACCTGCACAACGAAGGTCACCATCACTTGATAAGCATAATAGATCACCATCACCATCTGAGCATTGCAGGTCACTATCACCAATTAGACACAGTCGTTTGCCTTCACCTGCTCGACGTCGTAGATCACCATCTCCTGAATGGCGTCGTAGATCACCATCTCCTGAATGGCGTCGTAGATCACCATCTCCTGAATGGCGTCGTAGATCACCATCACCAAAATGGAGTCGTAGGTCACCATCACCAAGACGACGTCGTAGGTCACCATCACCAAGACGACGTCGTAGGTCTCCATCACCAAGACGACGTCGTAGGTCTCCATCACCAAGACGGCGTCACAGGTCTCCATCACCTGTACGACGCCAAAGGTCACCAACTCCTGTACGACGCCGAAGGTCACCAACTCCTGTACGACGTCGAAGGTCACCAACTCCTGTACGACGTCGATGGTCACCATCTCCAATACGAAGTCGAAGGTCACCATCGTCGCCGCGTCATTACAGGTCACCATCTCCACACCGTCGCAAATCACCTTCCCTTGTGCGTCGTCATAGATCGCCATCTCCAGCACACTACCGGAGATCGCCCTCACCTATTAAACGCCACCCATCTCGTTCTCCAAGGCAACGCTCTATGTCACCTTCATCCTCACCAATACAGAAATGGGATAGGCCATCACCACATGATCATCACATAACACCCTCTCCTCTAGAACGTAGATCTCCATCATCTCCAGCACGTCTCAAGAGATCAAGCCTTTCTCAACATAGATCCATTTCACCATATGATCGGAGTTATTCATCAAAGGAGCGGGGAAACCGATCGCCTGTCAAAGTAAAATCTCCCAGGGTCAGAACCAGGTACTTCTCTTTTCCTGTATTAAGCTTGCATCCTGTGTGATGGTTTCTACCTACTTAGCTGCATGTTATTAATCTGTTGATCAAAACTGCTAGATGGTAAGAGTACTAGCCATCTATAGAACAGTAAATCTGCAGGCTGCTGTTGAAACTTTTTAGTTCTTGAATTTGTGAATTAATTTAACTTGATCTTTAGTGTTGAGATCCTTAGAAACTTTTACTATTTGTTTGGCTCATATGATTGTGATTTGCTTTGCTGGGTTTTTGTGTTGTCCCACGTTGGTTGGGGAGGAGAACAAACCACCATTTATAAAGGTGTGGAAACCTTCCTCTAGCAGACGCATTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAGCCAGCCCAAAAAGGACAATATCTGCTAGCGGTGGATCTGGGTCGTTACAAATGGTATTCGAGCCAGACACTGGACGATGTACTAGCCTTCTTGCTGTTCCCCGAAGGGGGGTAGACATGAGGCGGTGTGCAAGTAAGGACGCTGGGCCCCAAAGGGGGTGGATTTGGGGGCAGTCCCACATCGATTGGAGGAAGGAAAGAGTGTCAGCAAGGACGCTGGGCCCCGAAGAGGGGTGGATTGTGATGTCCCCCATTGGTTGGGGAGGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTCCCCTAGCAGATGCATTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAGCCCGAAAGGGAAAGCCAGCCCAAAAAGGACAATATATGCTAGCGGTGGATCTGGGTCGTTACAGTTTTATTCATCTGTTTTATGATAAGTTCAGAGTGTTAGTTTATGGACTTGCCCCTGATTCTTTGGAATTTAGAAAGAAATATCAGGAACTAAGGATCCTTGTAGAAGGGTATTCTGTTATTTTAATCGTTTATACGTGAAATTACAGGCCTGTTACTCTTGTTTTTGTTTTATATTTATTTTGTAGTGATGAAAAAAGCTACTCACGCCGAGGTAAAGCCAAGGAAACTGAGGCTCGGACTGTCGAAAATAATAATAACCGGCGCGAGGTCTCAGATTCTGATATGGAGGAAGGCTATAAGCATAAAACCAGAAGTAAGGGTAGGAAAAGACACAGAAGATCAGACAAGAGTGACACTTCTTCGGAGAGAAGACATAGAAGATCAGACAGGAGTGACACTTCTTTAGAGAGAAGACACAGAAGATCAGACAGGCGCGACACTTCTTCGGAAGACAGCTATGATAGTGAATTGGAGAGGAAGGAGGCCCGGAGAAGGAAGGAGGAGGAGAGGAGGTGTTGGAAGGAGAAGAAGCGACAAAGACGTGAAGAGCATCGACGTAAAAAGGAAAAGCGGCGTGCTGAGAAGACGAAAGCTAAGACTTTCAGTTATGATTGCTCGGAAGAGTGTTGTCCGAGTGATAGTGCGTATGAGGCCGAGCAGAGAAGGTTAGAGGTCGAGTTGAGGAATAAGGCACTGGAAGCATTCAATGCAAGGAAAGGGAGAAGGCATAATAGATCTTCAGAATAGTCTTGTCCTTCCACATAAAAGGTATTGATAAATGGTGATTTCTTTGATGTTCATTTGAATGCAAACTCAGCACAGAGCTTGTTTTGGAGTTCTTTTAGAATGGCAGCCTTACCTTAGCTACTTACAGAAATCTTATCGAATCTTTAACTCAATGTTGCATAGACGTGTAAAAAGTTAAGTACACTAACTAAACACACACAGGAGTACGAGAACAAAACTTAAAATTTAATCTAATTTACATTTGTAATTAAGGTTTGGTAACGGTATCTCCACATTTCGACCAATAGGGAGAGGACCCTAGAGCGGATTTCCCCCTAACAGGATGACAAGAGACGACTTCCAGTAAGTGTTAGGGATGAGACGCCAGACATGAGCTTTGACGATATCATCGATATTTTTATTACATAATTTAAAAATGAATGAAATATTATAAAAAAAAAAAAAAAAAAATCTATTTGTTATATTTATAATTTTTCAAAAATATCTATCGGTATCTTACAAGCCTTGAAGAAATATCTGTTATCTAATGTTTTGAAGGTGCCCAATTTCCAGACGGTCGACATGTCGTTCGCGTTGGAATTTGGAATAGCCTGTGGCATCAAGCCGAAGCATAACGAGAAGGACGCAGACATCTGGAAGGGTCAAAATCCCAAGAGCAGCGACGGCTCAACTACGGAGCTTCCATTCAAATTCCCCATGGGATGA

mRNA sequence

ATGAAAACATCACCGGCTCTCTCTCGCCGTCGCTACCACCGCCGGGGAGCGTTCGGAGCTTCTTCTCTCCCTCAGTTTCTCCCCAACCCATTGCTTACAACAGACCCACCTTGGTTCCCACTACAAACCCTGAAAAATGTCCGGCGGGGTACGACTGCGGACCAAGACACTCGTTTTTCAAACAAGCAAGCAAAGCTGCTGAAGTCACAGAAGTTCCCTGCTGAACTAGACCAACTGGTTGATACGACAAAGGTGAAGATGGACGTTATCAGGCCGTGGATTGCTACGAGGGCGACTGAGCTTCTTGGGTTTGAAGATGAAGAAGTAAATGGGAAGGAAGTTCAAATACAACTCACTGGGTTCATGGAAAAGAACACTGTGAAGTTTATGAAAGAGCTTTGGACACTACTTCTAAGTGCCCAGAAGAACGCCAGTGGTGTACCTCAACAATTTTTGGATGCCAAGGAAGAAGAAATTAGGAAGAAGAAGGCAGAGACAGATTTTCTTGCAAATGAAATTCAGAAAAAGAGAGAGAAGGAACATAAAGAAATTGAGGAGCAGAGATCAAAGAATATGGACGATGGGGCTGAAAAGGTGGCCGATTTTGTATTGGAGCCTACGTCAATGAATCGTTCAGAGGACGAGGAAGAGGCTGAAAAGAGTAATGGTGTTAGGGGAAGAAGCAGTGATGGACACAAGTCAAGGAGCATGTCTCGATCACCTCAACGGCTACGAGACTCCTTTTCGCAAGAAAGATTATCTATTAGCCCACGTCGTAGGGACCATCGTGATTCATCCTCTCCTCGACATAGATCATCTGATTCAAGAAGGTCTAGATCTACTTCACATCGTAAATCTCTTTCTCCAGTAGTGCATCAGTTGCGGTCTCCTTCTCAACATAGTTCACCATCTCCTCATTGTAAATCACCACATCAACTATCTTCGTCTGGGCAACGTCGATCATCGTCACCTGCACAACGAAGGTCACCATCTCCACACCGTCGCAAATCACCTTCCCTTGTGCGTCGTCATAGATCGCCATCTCCAGCACACTACCGGAGATCGCCCTCACCTATTAAACGCCACCCATCTCGTTCTCCAAGGCAACGCTCTATGTCACCTTCATCCTCACCAATACAGAAATGGGATAGGCCATCACCACATGATCATCACATAACACCCTCTCCTCTAGAACGTAGATCTCCATCATCTCCAGCACGTCTCAAGAGATCAAGCCTTTCTCAACATAGATCCATTTCACCATATGATCGGAGTTATTCATCAAAGGAGCGGGGAAACCGATCGCCTGTCAAAGTAAAATCTCCCAGGGTCAGAACCAGTGATGAAAAAAGCTACTCACGCCGAGGTAAAGCCAAGGAAACTGAGGCTCGGACTGTCGAAAATAATAATAACCGGCGCGAGGTCTCAGATTCTGATATGGAGGAAGGCTATAAGCATAAAACCAGAAGTAAGGGTAGGAAAAGACACAGAAGATCAGACAAGAGTGACACTTCTTCGGAGAGAAGACATAGAAGATCAGACAGGAGTGACACTTCTTTAGAGAGAAGACACAGAAGATCAGACAGGCGCGACACTTCTTCGGAAGACAGCTATGATAGTGAATTGGAGAGGAAGGAGGCCCGGAGAAGGAAGGAGGAGGAGAGGAGGTGTTGGAAGGAGAAGAAGCGACAAAGACGTGAAGAGCATCGACGTAAAAAGGAAAAGCGGCGTGCTGAGAAGACGAAAGCTAAGACTTTCAGTTATGATTGCTCGGAAGAGTGTTGTCCGAGTGATAGTGCGTATGAGGCCGAGCAGAGAAGGTTAGAGGTGCCCAATTTCCAGACGGTCGACATGTCGTTCGCGTTGGAATTTGGAATAGCCTGTGGCATCAAGCCGAAGCATAACGAGAAGGACGCAGACATCTGGAAGGGTCAAAATCCCAAGAGCAGCGACGGCTCAACTACGGAGCTTCCATTCAAATTCCCCATGGGATGA

Coding sequence (CDS)

ATGAAAACATCACCGGCTCTCTCTCGCCGTCGCTACCACCGCCGGGGAGCGTTCGGAGCTTCTTCTCTCCCTCAGTTTCTCCCCAACCCATTGCTTACAACAGACCCACCTTGGTTCCCACTACAAACCCTGAAAAATGTCCGGCGGGGTACGACTGCGGACCAAGACACTCGTTTTTCAAACAAGCAAGCAAAGCTGCTGAAGTCACAGAAGTTCCCTGCTGAACTAGACCAACTGGTTGATACGACAAAGGTGAAGATGGACGTTATCAGGCCGTGGATTGCTACGAGGGCGACTGAGCTTCTTGGGTTTGAAGATGAAGAAGTAAATGGGAAGGAAGTTCAAATACAACTCACTGGGTTCATGGAAAAGAACACTGTGAAGTTTATGAAAGAGCTTTGGACACTACTTCTAAGTGCCCAGAAGAACGCCAGTGGTGTACCTCAACAATTTTTGGATGCCAAGGAAGAAGAAATTAGGAAGAAGAAGGCAGAGACAGATTTTCTTGCAAATGAAATTCAGAAAAAGAGAGAGAAGGAACATAAAGAAATTGAGGAGCAGAGATCAAAGAATATGGACGATGGGGCTGAAAAGGTGGCCGATTTTGTATTGGAGCCTACGTCAATGAATCGTTCAGAGGACGAGGAAGAGGCTGAAAAGAGTAATGGTGTTAGGGGAAGAAGCAGTGATGGACACAAGTCAAGGAGCATGTCTCGATCACCTCAACGGCTACGAGACTCCTTTTCGCAAGAAAGATTATCTATTAGCCCACGTCGTAGGGACCATCGTGATTCATCCTCTCCTCGACATAGATCATCTGATTCAAGAAGGTCTAGATCTACTTCACATCGTAAATCTCTTTCTCCAGTAGTGCATCAGTTGCGGTCTCCTTCTCAACATAGTTCACCATCTCCTCATTGTAAATCACCACATCAACTATCTTCGTCTGGGCAACGTCGATCATCGTCACCTGCACAACGAAGGTCACCATCTCCACACCGTCGCAAATCACCTTCCCTTGTGCGTCGTCATAGATCGCCATCTCCAGCACACTACCGGAGATCGCCCTCACCTATTAAACGCCACCCATCTCGTTCTCCAAGGCAACGCTCTATGTCACCTTCATCCTCACCAATACAGAAATGGGATAGGCCATCACCACATGATCATCACATAACACCCTCTCCTCTAGAACGTAGATCTCCATCATCTCCAGCACGTCTCAAGAGATCAAGCCTTTCTCAACATAGATCCATTTCACCATATGATCGGAGTTATTCATCAAAGGAGCGGGGAAACCGATCGCCTGTCAAAGTAAAATCTCCCAGGGTCAGAACCAGTGATGAAAAAAGCTACTCACGCCGAGGTAAAGCCAAGGAAACTGAGGCTCGGACTGTCGAAAATAATAATAACCGGCGCGAGGTCTCAGATTCTGATATGGAGGAAGGCTATAAGCATAAAACCAGAAGTAAGGGTAGGAAAAGACACAGAAGATCAGACAAGAGTGACACTTCTTCGGAGAGAAGACATAGAAGATCAGACAGGAGTGACACTTCTTTAGAGAGAAGACACAGAAGATCAGACAGGCGCGACACTTCTTCGGAAGACAGCTATGATAGTGAATTGGAGAGGAAGGAGGCCCGGAGAAGGAAGGAGGAGGAGAGGAGGTGTTGGAAGGAGAAGAAGCGACAAAGACGTGAAGAGCATCGACGTAAAAAGGAAAAGCGGCGTGCTGAGAAGACGAAAGCTAAGACTTTCAGTTATGATTGCTCGGAAGAGTGTTGTCCGAGTGATAGTGCGTATGAGGCCGAGCAGAGAAGGTTAGAGGTGCCCAATTTCCAGACGGTCGACATGTCGTTCGCGTTGGAATTTGGAATAGCCTGTGGCATCAAGCCGAAGCATAACGAGAAGGACGCAGACATCTGGAAGGGTCAAAATCCCAAGAGCAGCGACGGCTCAACTACGGAGCTTCCATTCAAATTCCCCATGGGATGA

Protein sequence

MKTSPALSRRRYHRRGAFGASSLPQFLPNPLLTTDPPWFPLQTLKNVRRGTTADQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIRPWIATRATELLGFEDEEVNGKEVQIQLTGFMEKNTVKFMKELWTLLLSAQKNASGVPQQFLDAKEEEIRKKKAETDFLANEIQKKREKEHKEIEEQRSKNMDDGAEKVADFVLEPTSMNRSEDEEEAEKSNGVRGRSSDGHKSRSMSRSPQRLRDSFSQERLSISPRRRDHRDSSSPRHRSSDSRRSRSTSHRKSLSPVVHQLRSPSQHSSPSPHCKSPHQLSSSGQRRSSSPAQRRSPSPHRRKSPSLVRRHRSPSPAHYRRSPSPIKRHPSRSPRQRSMSPSSSPIQKWDRPSPHDHHITPSPLERRSPSSPARLKRSSLSQHRSISPYDRSYSSKERGNRSPVKVKSPRVRTSDEKSYSRRGKAKETEARTVENNNNRREVSDSDMEEGYKHKTRSKGRKRHRRSDKSDTSSERRHRRSDRSDTSLERRHRRSDRRDTSSEDSYDSELERKEARRRKEEERRCWKEKKRQRREEHRRKKEKRRAEKTKAKTFSYDCSEECCPSDSAYEAEQRRLEVPNFQTVDMSFALEFGIACGIKPKHNEKDADIWKGQNPKSSDGSTTELPFKFPMG

Homology

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BLAST of Cp4.1LG00g03600 vs. Swiss-Prot
Match: YJQ5_SCHPO (PWI domain-containing protein C825.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC825.05c PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.1e-19
Identity = 79/254 (31.10%), Postives = 127/254 (50.00%), Query Frame = 1


Query: 49  RGTTADQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIRPWIATRATELLGFEDEE 108
           +G  A+Q+T F+    KL++S KFPA  D  VD  KV ++V++PWIATR  EL+GFEDE 
Sbjct: 6   KGVAAEQETLFTTADKKLMRSTKFPASYDTKVDMKKVNIEVLKPWIATRLNELIGFEDEV 65

Query: 109 V--------------------------NGKEVQIQLTGFMEKNTVKFMKELWTLLLSAQK 168
           V                          + ++VQ+ LTGF+E N   F +ELW+L++SA +
Sbjct: 66  VINFVYGMLEEAVEASKTSDSQNESTLDPRKVQLNLTGFLESNATAFTEELWSLIISASQ 125

Query: 169 NASGVPQQFLDAKEEEIRKKKAETDFLANEIQKKREKEHKEIEEQRSKNMDDGAEKVADF 228
           N  G+P++F+  K+EEI K K  T+  A++ + K   +H    E R ++    + +    
Sbjct: 126 NQYGIPEKFILEKKEEISKLKDRTE--ASKEESKTVTDHSNRRESRRESTYYDSRERNGK 185

Query: 229 VLEPTSMNRSEDEEEAEKSNGVRGRSSDGHKSRSMSRSPQRLRDSFSQERLSISPRRRDH 277
               ++++R    + ++      GRS   H     SR  ++ R     ER  I    R H
Sbjct: 186 RTSRSTLDRKRFHDASDTERNRYGRSPSPH-----SRFSEKPRG----ERYDIRSYSRSH 245

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BLAST of Cp4.1LG00g03600 vs. Swiss-Prot
Match: SRRM1_CHICK (Serine/arginine repetitive matrix protein 1 OS=Gallus gallus GN=SRRM1 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 8.2e-16
Identity = 178/582 (30.58%), Postives = 269/582 (46.22%), Query Frame = 1


Query: 49  RGTTADQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIRPWIATRATELLGFEDEE 108
           RGT+A+QD RFSNKQ KLLK  KF   L++ VD +KV ++VI+PWI  R TE+LGFED+ 
Sbjct: 7   RGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDV 66

Query: 109 V-------------NGKEVQIQLTGFME-KNTVKFMKELWTLLLSAQKNASGVPQQFLDA 168
           V             + K +QI LTGF+  KN  +FM ELW LLLSAQ+N +G+P  FL+ 
Sbjct: 67  VIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPTAFLEL 126

Query: 169 KEEEIRKKKAETDFLA-----NEIQKKREKEHKEIEEQRSKNMDDGAEKVADFVLEPTSM 228
           K+EEI++++ E + LA     +E ++KR+KE K+  E+R ++      K       P+  
Sbjct: 127 KKEEIKQRQIEQEKLASMKKQDEDKEKRDKEDKDNREKRDRSRSPRRRKSR----SPSPR 186

Query: 229 NRSEDEEEAEKSNGVRGRSSDGHKSRSMSRSPQRLRDSFSQERLSISPRRRDHRDSSSPR 288
            RS       K +  R   S  H+++S S +P              +P +++      P 
Sbjct: 187 RRSSPIRRERKRSHSR---SPHHRTKSRSATP--------------APEKKEATPEPEPS 246

Query: 289 HRSSDSRRSRSTSHRKSLSPVVHQLRSPSQHSSPSPHCKSPHQLSSSGQRRSSSPAQRRS 348
            +  ++    +TS+          +    +   P P  K      +S + R     + R 
Sbjct: 247 VKPKETVVQEATSN--------SDIPKAPKSEPPVPETKEISPERNSKKEREKEKEKTRQ 306

Query: 349 PSPHRRKSPSLVRRHRSPSPAHYRRSPSPIKRHPSRSPRQRSMSPSSSPIQKWD---RPS 408
            SP R KS S   R RS SP+H R    P +RH SRS R+ S     SP ++      P 
Sbjct: 307 RSPTRSKSRS---RSRSRSPSHSR----PRRRHRSRSRRRPSPRRRPSPRRRTPPRRMPP 366

Query: 409 PHDHHITPSPLERRSPSSPARLKRSSLSQHRSIS------PYDRSYSSKERGNRSPVKVK 468
           P  H  + SP+ RR  SS A L  SS S   S S      P  R+ SS  R  R      
Sbjct: 367 PPRHRRSRSPVRRRRRSS-ASLSGSSSSSSSSRSRSPPKKPPKRTVSSPPRKTRRLSPSA 426

Query: 469 SP---RVRTSDEKSYSRRGKAKETEARTVENNNNRREVSDSDMEEGYKHKTRSKGRK--- 528
           SP   R R S   S   + +   T  ++     +R  VS        KHK+  K      
Sbjct: 427 SPPRRRHRPSPPASPPPKPRRSPTPQQSNRARKSRGSVSPG-RASAPKHKSTEKRESPSP 486

Query: 529 --RHRRSDKSDTSSERRHRRSDRSDTSLERRHRRSDRRDTS-SEDSYDSELERKE----- 585
             + R+++ S++  ++  + +        R++RR +++ +S S  S  SE ER +     
Sbjct: 487 APKPRKAELSESEEDKGGKMAAADSVQQRRQYRRQNQQSSSDSGSSSSSEEERPKRSNVK 546

[Close]

BLAST of Cp4.1LG00g03600 vs. Swiss-Prot
Match: SRRM1_MOUSE (Serine/arginine repetitive matrix protein 1 OS=Mus musculus GN=Srrm1 PE=1 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-13
Identity = 170/567 (29.98%), Postives = 244/567 (43.03%), Query Frame = 1


Query: 49  RGTTADQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIRPWIATRATELLGFEDEE 108
           RGT+A+QD RFSNKQ KLLK  KF   L++ VD +KV ++VI+PWI  R TE+LGFED+ 
Sbjct: 7   RGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDV 66

Query: 109 V-------------NGKEVQIQLTGFME-KNTVKFMKELWTLLLSAQKNASGVPQQFLDA 168
           V             + K +QI LTGF+  KN  +FM ELW LLLSAQ+N +G+P  FL+ 
Sbjct: 67  VIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLEL 126

Query: 169 KEEEIRKKKAETDFLANEIQKKREKEHKEIEEQRSKNMDDGAEKVADFVLEPTSMNRSED 228
           K+EEI++++ E + LA+    K++ E K+                              D
Sbjct: 127 KKEEIKQRQIEQEKLAS---LKKQDEDKD----------------------------KRD 186

Query: 229 EEEAEKSNGVRGRSSDGHKSRSMSRSPQRLRDSFSQERLSISPRRRDHRDSSSPRHRSSD 288
           +EE E S   R RS                           SPRRR  R S SPR RSS 
Sbjct: 187 KEEKESSREKRERSR--------------------------SPRRRKSR-SPSPRRRSSP 246

Query: 289 SRRSRSTSHRKSLSPVVHQLRSPSQHSSPSPHCKSPHQLSSSGQRRSSSPAQRRSPSP-H 348
            RR R  SH +S     H+ +S S   +P    KSP     S + + SS  +  S S   
Sbjct: 247 VRRERKRSHSRSPR---HRTKSRSPSPAPEKKEKSPELPEPSVRMKDSSVQEATSTSDIL 306

Query: 349 RRKSPSLVRRHRSPSPAHYRRSPSPIKRHPSRSPRQRSMSPSSSPIQKWDRPSPHDHHIT 408
           +   P  V   + PSP    +      R  SRS R +S S + S      RP       +
Sbjct: 307 KAPKPEPVPEPKEPSPEKNSKKEKEKTRPRSRS-RSKSRSRTRSRSPSHTRPRRRHRSRS 366

Query: 409 PSPLERRSPSSPARLKRSSLSQHRSISPYDRSYSSKERGNRSPVKVKSPRVRTSDEKSYS 468
            S   RR PS   R      +  R + P  R   S+  G R      S    +S   S  
Sbjct: 367 RSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPGRRRRRSSASLSGSSSSSSSSR 426

Query: 469 RRGKAKETEARTVENNNNRREVSDSDMEEGYKHKTRSKGRKRHRRSDKSDTSSERRH--- 528
            R   K+   RT       R +S S           S  R+RHR S  +    + RH   
Sbjct: 427 SRSPPKKPPKRTSSPPRKTRRLSPS----------ASPPRRRHRPSSPATPPPKTRHSPT 486

Query: 529 ----RRSDRSDTSLE--------RRHRRSDRRDTSSEDSYDSELERKEARRRKEEERRCW 586
                R+ +S  S+          +H+ +++R++ S      ++E  E+   K  +    
Sbjct: 487 PQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGSKMAA- 499

[Close]

BLAST of Cp4.1LG00g03600 vs. Swiss-Prot
Match: SRRM1_HUMAN (Serine/arginine repetitive matrix protein 1 OS=Homo sapiens GN=SRRM1 PE=1 SV=2)

HSP 1 Score: 77.0 bits (188), Expect = 8.5e-13
Identity = 172/581 (29.60%), Postives = 244/581 (42.00%), Query Frame = 1


Query: 49  RGTTADQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIRPWIATRATELLGFEDEE 108
           RGT+A+QD RFSNKQ KLLK  KF   L++ VD +KV ++VI+PWI  R TE+LGFED+ 
Sbjct: 7   RGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDV 66

Query: 109 V-------------NGKEVQIQLTGFME-KNTVKFMKELWTLLLSAQKNASGVPQQFLDA 168
           V             + K +QI LTGF+  KN  +FM ELW LLLSAQ+N +G+P  FL+ 
Sbjct: 67  VIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLEL 126

Query: 169 KEEEIRKKKAETDFLANEIQKKREKEHKEIEEQRSKNMDDGAEKVADFVLEPTSMNRSED 228
           K+EEI++++ E + LA+    K++ E K+                              D
Sbjct: 127 KKEEIKQRQIEQEKLAS---MKKQDEDKD----------------------------KRD 186

Query: 229 EEEAEKSNGVRGRSSDGHKSRSMSRSPQRLRDSFSQERLSISPRRRDHRDSSSPRHRSSD 288
           +EE E S   R RS                           SPRRR  R S SPR RSS 
Sbjct: 187 KEEKESSREKRERSR--------------------------SPRRRKSR-SPSPRRRSSP 246

Query: 289 SRRSRSTSHRKSLSPVVHQLRSPSQHSSPSPHCKSPHQLSSSGQRRSSSPAQRRSPSPHR 348
            RR R  SH +S     H+ +S S   +P    K+P     S         + + PS   
Sbjct: 247 VRRERKRSHSRSPR---HRTKSRSPSPAPEKKEKTPELPEPS--------VKVKEPSVQE 306

Query: 349 RKSPSLVRRHRSPSPAHYRRSPSPIKRHPSRSPRQRSMSPSSSPIQKWDRPSPHDHHITP 408
             S S + +   P P    + PSP K       ++++            RP       + 
Sbjct: 307 ATSTSDILKVPKPEPIPEPKEPSPEKNSKKEKEKEKT------------RPRSRSRSKSR 366

Query: 409 SPLERRSPSSPARLKRSSLSQHRSISPYDRSYSSKERGNRSPVKVKSPRVRTSDEKSYSR 468
           S    RSPS     +R     HRS S   RSYS + R         SPR R S  +    
Sbjct: 367 SRTRSRSPSHTRPRRR-----HRSRS---RSYSPRRR--------PSPRRRPSPRRRTPP 426

Query: 469 RGKAKETEARTVENNNNRREVSDSDMEEGYKHKTRSKGRKRHRRSDKSDTSSERRHRRSD 528
           R        R   +   RR  S + +       + S+ R   ++  K  +S  R+ RR  
Sbjct: 427 RRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLS 486

Query: 529 RSDTSLERRHRRSDRRDTSSEDSYDSELERKEARRRKEE--------ERRCWKEKKRQRR 588
            S +   RRHR S    T    +  S   ++  R RK            +  K K  ++R
Sbjct: 487 PSASPPRRRHRPSPPA-TPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKR 486

Query: 589 EEHRRKKEKRRAEKTKAKTFSYDCSEECCPSDSAYEAEQRR 608
           E      + R+ E ++++    D   +   +DS  +  Q R
Sbjct: 547 ESPSPAPKPRKVELSESEE---DKGGKMAAADSVQQRRQYR 486

[Close]

BLAST of Cp4.1LG00g03600 vs. Swiss-Prot
Match: SRRM1_PONAB (Serine/arginine repetitive matrix protein 1 OS=Pongo abelii GN=SRRM1 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 8.5e-13
Identity = 172/581 (29.60%), Postives = 244/581 (42.00%), Query Frame = 1


Query: 49  RGTTADQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIRPWIATRATELLGFEDEE 108
           RGT+A+QD RFSNKQ KLLK  KF   L++ VD +KV ++VI+PWI  R TE+LGFED+ 
Sbjct: 7   RGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDV 66

Query: 109 V-------------NGKEVQIQLTGFME-KNTVKFMKELWTLLLSAQKNASGVPQQFLDA 168
           V             + K +QI LTGF+  KN  +FM ELW LLLSAQ+N +G+P  FL+ 
Sbjct: 67  VIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLEL 126

Query: 169 KEEEIRKKKAETDFLANEIQKKREKEHKEIEEQRSKNMDDGAEKVADFVLEPTSMNRSED 228
           K+EEI++++ E + LA+    K++ E K+                              D
Sbjct: 127 KKEEIKQRQIEQEKLAS---MKKQDEDKD----------------------------KRD 186

Query: 229 EEEAEKSNGVRGRSSDGHKSRSMSRSPQRLRDSFSQERLSISPRRRDHRDSSSPRHRSSD 288
           +EE E S   R RS                           SPRRR  R S SPR RSS 
Sbjct: 187 KEEKESSREKRERSR--------------------------SPRRRKSR-SPSPRRRSSP 246

Query: 289 SRRSRSTSHRKSLSPVVHQLRSPSQHSSPSPHCKSPHQLSSSGQRRSSSPAQRRSPSPHR 348
            RR R  SH +S     H+ +S S   +P    K+P     S         + + PS   
Sbjct: 247 VRRERKRSHSRSPR---HRTKSRSPSPAPEKKEKTPELPEPS--------VKVKEPSVQE 306

Query: 349 RKSPSLVRRHRSPSPAHYRRSPSPIKRHPSRSPRQRSMSPSSSPIQKWDRPSPHDHHITP 408
             S S + +   P P    + PSP K       ++++            RP       + 
Sbjct: 307 ATSTSDILKVPKPEPIPEPKEPSPEKNSKKEKEKEKT------------RPRSRSRSKSR 366

Query: 409 SPLERRSPSSPARLKRSSLSQHRSISPYDRSYSSKERGNRSPVKVKSPRVRTSDEKSYSR 468
           S    RSPS     +R     HRS S   RSYS + R         SPR R S  +    
Sbjct: 367 SRTRSRSPSHTRPRRR-----HRSRS---RSYSPRRR--------PSPRRRPSPRRRTPP 426

Query: 469 RGKAKETEARTVENNNNRREVSDSDMEEGYKHKTRSKGRKRHRRSDKSDTSSERRHRRSD 528
           R        R   +   RR  S + +       + S+ R   ++  K  +S  R+ RR  
Sbjct: 427 RRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLS 486

Query: 529 RSDTSLERRHRRSDRRDTSSEDSYDSELERKEARRRKEE--------ERRCWKEKKRQRR 588
            S +   RRHR S    T    +  S   ++  R RK            +  K K  ++R
Sbjct: 487 PSASPPRRRHRPSPPA-TPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKR 486

Query: 589 EEHRRKKEKRRAEKTKAKTFSYDCSEECCPSDSAYEAEQRR 608
           E      + R+ E ++++    D   +   +DS  +  Q R
Sbjct: 547 ESPSPAPKPRKVELSESEE---DKGGKMAAADSVQQRRQYR 486

[Close]

BLAST of Cp4.1LG00g03600 vs. TrEMBL
Match: A0A0A0LVE0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G524700 PE=4 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 4.7e-119
Identity = 298/438 (68.04%), Postives = 319/438 (72.83%), Query Frame = 1


Query: 49  RGTTADQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIRPWIATRATELLGFEDE- 108
           RGT+ADQDTRFSNKQAKLLK+QKFPAELDQLVDTTKVKMDVIRPWIATR TELLGFEDE 
Sbjct: 7   RGTSADQDTRFSNKQAKLLKTQKFPAELDQLVDTTKVKMDVIRPWIATRVTELLGFEDEV 66

Query: 109 ------------EVNGKEVQIQLTGFMEKNTVKFMKELWTLLLSAQKNASGVPQQFLDAK 168
                       EVNGKEVQIQLTGFMEKNTVKFMKELW LLLSAQKNASGVPQQFLDAK
Sbjct: 67  LINFIYGLLDGKEVNGKEVQIQLTGFMEKNTVKFMKELWILLLSAQKNASGVPQQFLDAK 126

Query: 169 EEEIRKKKAETDFLANEIQKKREKEHKEIEEQRSKNMDDGAEKVADFVLEPTSMN-RS-- 228
           EEEIRKKKAETDFLANEIQKKREKE++EIEEQRSKNMDDGAEKV++ VLE TS N RS  
Sbjct: 127 EEEIRKKKAETDFLANEIQKKREKENREIEEQRSKNMDDGAEKVSNSVLEHTSKNVRSRA 186

Query: 229 -----EDEEEAEKSNGVRGRSSDGHKSRSMSRSPQRLRDSFSQERLSISPRRRDHRDSSS 288
                EDEE AEK NGVRGRSSD HKSRSMSRSPQR R SFS+ R S SPRRRD RDS S
Sbjct: 187 MRNYPEDEEVAEKRNGVRGRSSDRHKSRSMSRSPQRRRRSFSRGRSSSSPRRRDRRDSFS 246

Query: 289 PRHRSSD-SRRSRSTSHRKSLSPVVHQLRSPSQHSSPSPHCKSPHQLSSSGQRRSSSPAQ 348
           PRHRSS   RRS STSHRKS SP V QLRSPSQHSSPSP  KSP++ SS  QR S SPA 
Sbjct: 247 PRHRSSHLMRRSGSTSHRKSRSPEVRQLRSPSQHSSPSPGRKSPYRSSSPMQRLSLSPAH 306

Query: 349 RRSPS-PHRRKSPSLVRRHRSPSPAHYRRSPSPIKRHPSRSPRQRSMSP-------SSSP 408
           RRSP+     +SPS  R  RS SP   RRSPSP++R  S SP+ R  SP       S SP
Sbjct: 307 RRSPALDKHNRSPSPTRHRRSLSPIRRRRSPSPVRRRRSPSPKWRRRSPSPEWRRRSPSP 366

Query: 409 IQKWDRPSPHDHHITPSPLERRSPSSPARLKRSSL--SQHRSISPYDRSYSSKERGNRSP 455
            ++   PSP     +PSP+ RR   SP R +RS     +HRS SPY R   S  R  RSP
Sbjct: 367 GRRRRSPSPIRRWRSPSPIRRRRSPSPIRRRRSPSPPRRHRSPSPYRRKSPSFVRRRRSP 426

[Close]

BLAST of Cp4.1LG00g03600 vs. TrEMBL
Match: A0A061GWT7_THECC (Splicing factor PWI domain-containing protein, putative isoform 1 OS=Theobroma cacao GN=TCM_041778 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 9.0e-70
Identity = 238/504 (47.22%), Postives = 289/504 (57.34%), Query Frame = 1


Query: 49  RGTTADQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIRPWIATRATELLGFED-- 108
           RGT+ADQDTRFSNKQAKLLKSQKF  ELD LVD TKV+MDVIRPWIATR TELLGFED  
Sbjct: 7   RGTSADQDTRFSNKQAKLLKSQKFAPELDHLVDMTKVEMDVIRPWIATRVTELLGFEDEV 66

Query: 109 -----------EEVNGKEVQIQLTGFMEKNTVKFMKELWTLLLSAQKNASGVPQQFLDAK 168
                      +EVNGK+VQI LTGFMEKNT KFMKELWTLLLSAQ+NASGVPQQFLDAK
Sbjct: 67  LINFIYGLLDGKEVNGKQVQISLTGFMEKNTGKFMKELWTLLLSAQRNASGVPQQFLDAK 126

Query: 169 EEEIRKKKAETDFLANEIQKKREKEHKEIEEQRSKNMDDGAE-KVADFVLEPTSMN---- 228
           EEE RKKKAE+D +ANEIQKK++KE  E+E++R + MD+G E K  D  LEP+S N    
Sbjct: 127 EEETRKKKAESDRIANEIQKKKDKESGELEQERLRKMDNGDERKAGDLELEPSSKNKLPK 186

Query: 229 ----RSEDEEEAEKSNGV-RGRSSDGHKSRSMSRSPQRLRDSFSQERLSISPRRRDHRDS 288
               R E E +A++ NGV R R S    S   S SP+  R       LS S    D +  
Sbjct: 187 SSSARPEGERDADQRNGVGRKRVSRSPCSTDRSASPRGPRSQSISRSLSNSRSYSDDKQK 246

Query: 289 SSPRHRSSDSRRSRSTSHRKSLSPVVHQLRSPSQHSSPSP---------------HCKSP 348
           S    RS   R+   +S R   SP    L   S+HS  SP                 +SP
Sbjct: 247 SRSVSRSPQQRQRSISSDRMYRSPRRRSLTPRSRHSPRSPRSPARRRLSYSRRRSRSRSP 306

Query: 349 HQLSSSGQRRSSSPAQRRSPSPHRRKSPSLVRRHRSPSPAHYRRSPSPIKRHPSRSPRQR 408
            +  S  +RR  SP +RRSP+P RR+S S +RRHRSPSP    RSPSPI+RH S SP +R
Sbjct: 307 RRSRSPIRRRLRSPYRRRSPTPVRRRSRSPIRRHRSPSPIRRHRSPSPIRRHRSPSPIRR 366

Query: 409 SMSPSSSPIQKWDRPSPHDHHITPSPLERRSPSSPARLKRSSLSQHRSISPY-DRSYSSK 468
             SP S+  ++   PS      +PS + RRSP SP R +  S  + RS SP   RS    
Sbjct: 367 HRSPLSN--RRHRSPSLVRRRRSPSLVRRRSP-SPVRRRSPSPGRRRSPSPIRRRSLFPV 426

Query: 469 ERGNRSPVKVKSP----RVRTSDEKSYSRRGKAKETEARTVENNNNRREVSDSDMEEGYK 510
            R + SP++ +SP    R   S  +   RR  +     R+     +R   S       ++
Sbjct: 427 RRKSPSPLRRRSPPPMQRKSPSPMRQQHRRSSSTPPRYRSSSLVGHRSPAS------SHR 486

[Close]

BLAST of Cp4.1LG00g03600 vs. TrEMBL
Match: A0A061GXL7_THECC (Splicing factor PWI domain-containing protein, putative isoform 2 OS=Theobroma cacao GN=TCM_041778 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 9.0e-70
Identity = 238/504 (47.22%), Postives = 289/504 (57.34%), Query Frame = 1


Query: 49  RGTTADQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIRPWIATRATELLGFED-- 108
           RGT+ADQDTRFSNKQAKLLKSQKF  ELD LVD TKV+MDVIRPWIATR TELLGFED  
Sbjct: 7   RGTSADQDTRFSNKQAKLLKSQKFAPELDHLVDMTKVEMDVIRPWIATRVTELLGFEDEV 66

Query: 109 -----------EEVNGKEVQIQLTGFMEKNTVKFMKELWTLLLSAQKNASGVPQQFLDAK 168
                      +EVNGK+VQI LTGFMEKNT KFMKELWTLLLSAQ+NASGVPQQFLDAK
Sbjct: 67  LINFIYGLLDGKEVNGKQVQISLTGFMEKNTGKFMKELWTLLLSAQRNASGVPQQFLDAK 126

Query: 169 EEEIRKKKAETDFLANEIQKKREKEHKEIEEQRSKNMDDGAE-KVADFVLEPTSMN---- 228
           EEE RKKKAE+D +ANEIQKK++KE  E+E++R + MD+G E K  D  LEP+S N    
Sbjct: 127 EEETRKKKAESDRIANEIQKKKDKESGELEQERLRKMDNGDERKAGDLELEPSSKNKLPK 186

Query: 229 ----RSEDEEEAEKSNGV-RGRSSDGHKSRSMSRSPQRLRDSFSQERLSISPRRRDHRDS 288
               R E E +A++ NGV R R S    S   S SP+  R       LS S    D +  
Sbjct: 187 SSSARPEGERDADQRNGVGRKRVSRSPCSTDRSASPRGPRSQSISRSLSNSRSYSDDKQK 246

Query: 289 SSPRHRSSDSRRSRSTSHRKSLSPVVHQLRSPSQHSSPSP---------------HCKSP 348
           S    RS   R+   +S R   SP    L   S+HS  SP                 +SP
Sbjct: 247 SRSVSRSPQQRQRSISSDRMYRSPRRRSLTPRSRHSPRSPRSPARRRLSYSRRRSRSRSP 306

Query: 349 HQLSSSGQRRSSSPAQRRSPSPHRRKSPSLVRRHRSPSPAHYRRSPSPIKRHPSRSPRQR 408
            +  S  +RR  SP +RRSP+P RR+S S +RRHRSPSP    RSPSPI+RH S SP +R
Sbjct: 307 RRSRSPIRRRLRSPYRRRSPTPVRRRSRSPIRRHRSPSPIRRHRSPSPIRRHRSPSPIRR 366

Query: 409 SMSPSSSPIQKWDRPSPHDHHITPSPLERRSPSSPARLKRSSLSQHRSISPY-DRSYSSK 468
             SP S+  ++   PS      +PS + RRSP SP R +  S  + RS SP   RS    
Sbjct: 367 HRSPLSN--RRHRSPSLVRRRRSPSLVRRRSP-SPVRRRSPSPGRRRSPSPIRRRSLFPV 426

Query: 469 ERGNRSPVKVKSP----RVRTSDEKSYSRRGKAKETEARTVENNNNRREVSDSDMEEGYK 510
            R + SP++ +SP    R   S  +   RR  +     R+     +R   S       ++
Sbjct: 427 RRKSPSPLRRRSPPPMQRKSPSPMRQQHRRSSSTPPRYRSSSLVGHRSPAS------SHR 486

[Close]

BLAST of Cp4.1LG00g03600 vs. TrEMBL
Match: B9HPD0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s04160g PE=4 SV=2)

HSP 1 Score: 272.7 bits (696), Expect = 1.2e-69
Identity = 246/513 (47.95%), Postives = 285/513 (55.56%), Query Frame = 1


Query: 49  RGTTADQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIRPWIATRATELLGFEDE- 108
           RGT+ADQDTRFSNKQAKLLKSQKF  ELD LVDT K+KMDVIRPWIATR TELLGFEDE 
Sbjct: 7   RGTSADQDTRFSNKQAKLLKSQKFAPELDHLVDTRKMKMDVIRPWIATRVTELLGFEDEV 66

Query: 109 ------------EVNGKEVQIQLTGFMEKNTVKFMKELWTLLLSAQKNASGVPQQFLDAK 168
                       EVNGKEVQI LTGFMEKNT KFMKELWTLLLSAQKN SGVPQQFLDAK
Sbjct: 67  LINFIYGLLDGKEVNGKEVQISLTGFMEKNTGKFMKELWTLLLSAQKNESGVPQQFLDAK 126

Query: 169 EEEIRKKKAETDFLANEIQKKRE--KEHKEIEEQRSKNMDDGAEK--------VADFVLE 228
           EEE RKK+AE D +ANEIQKK+E  KE +E+E ++ K MD   EK         +  +L 
Sbjct: 127 EEETRKKQAEVDRIANEIQKKKEIEKEMRELEREKLKKMDIEVEKKANNAMEPASKHMLP 186

Query: 229 PTSMNRSEDEEEAEKSNGVRGR--------------------------------SSDGHK 288
             S    EDE+E +  NG RGR                                S  GHK
Sbjct: 187 KGSSGHDEDEKETDMRNGARGRKRASRSPHSTDRSFSSPRGSPSRTSRLILNSRSHSGHK 246

Query: 289 SRSMSRSPQRLRDSFSQERLSISPRRRDHRDSSSPRHRSSDSRRSRSTSHRKSLSPVVHQ 348
           SRS+SRSP+  R    Q  +S   RR   R S +PR R S  R S S   RKS S   H 
Sbjct: 247 SRSVSRSPEVRR----QRSISSDRRRSLRRRSITPRRRRSP-RDSPSPPRRKS-SYSRHI 306

Query: 349 LRSPSQHSSPSPHCKSPHQLSSSGQRRSSSPAQRRSPSPHRRKSPSLVRRHRSPSPAHYR 408
            RSP +H SPSP            +RR  SP +RRSPSP   +SPS VRR RSPSP   R
Sbjct: 307 SRSPLRHRSPSPI-----------RRRLRSPFRRRSPSPLHDRSPSPVRRRRSPSPVRRR 366

Query: 409 RSPSPIKRHPSRSPRQRSMSPSSSPIQKWDRPSPHDHHITPSPLERRSPSSPARLKRSSL 468
           RSPSP++R  S SP +R  SPS  PI++           +PSP+ RRSP  P R +RS L
Sbjct: 367 RSPSPVRRRRSPSPIRRRRSPS--PIRR---------RRSPSPVRRRSP-FPMR-RRSPL 426

Query: 469 SQHRSISPYDRSYSSKERGNRSPVKVKSPRVRTSDEKSYSRRGKAKETEARTVENNNNRR 507
              R      RS S   R + SP++ +SP        S  RRG  +        + +  R
Sbjct: 427 PLRR------RSPSPVSRRSPSPLRRRSPPSLRRRSPSPVRRGYQR--------SPSTPR 475

[Close]

BLAST of Cp4.1LG00g03600 vs. TrEMBL
Match: A0A0D2VIU6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G262700 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 2.0e-69
Identity = 259/528 (49.05%), Postives = 313/528 (59.28%), Query Frame = 1


Query: 49  RGTTADQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIRPWIATRATELLGFEDE- 108
           RGT+ADQDTRFSNKQAKLLKSQKF  EL+ LVD TKVKMDVIRPWIATR TELLGFEDE 
Sbjct: 7   RGTSADQDTRFSNKQAKLLKSQKFAPELEHLVDMTKVKMDVIRPWIATRVTELLGFEDEV 66

Query: 109 ------------EVNGKEVQIQLTGFMEKNTVKFMKELWTLLLSAQKNASGVPQQFLDAK 168
                       EVNGK+VQI LTGFMEKNT KFMKELW+LLLSAQ+NASGVPQQFLDAK
Sbjct: 67  LINFIYGLLDGKEVNGKQVQISLTGFMEKNTGKFMKELWSLLLSAQRNASGVPQQFLDAK 126

Query: 169 EEEIRKKKAETDFLANEIQKKREKEHKEIEEQRSKNMDDGAE-KVADFVLEPTSMN---- 228
           EEE RKKKAE+D +ANEIQKK++KE +E E+ R   MDDG E K  D  L+P+S N    
Sbjct: 127 EEETRKKKAESDRIANEIQKKKDKESRENEQNRLGKMDDGDEIKAGDTELDPSSKNMLPT 186

Query: 229 -----RSEDEEEAEKSNGV-RGRS---------------SDG-HKSRSMSRSPQRLRDSF 288
                R EDE +A++ NGV R RS               SDG  K RS+SRSP+  R S 
Sbjct: 187 KGSRARPEDERDADQRNGVGRNRSRSQSVSRSFSNSRSYSDGKQKFRSVSRSPESRRCSV 246

Query: 289 SQERLSISPRRRDHRDSSSPRHRSSDSRRSRSTSHRKSLSPVVHQLRSPSQ----HSSPS 348
           S +R+  SPRRR    SS+PR R S S  SRS   R+   P  ++ RSP +    +S   
Sbjct: 247 SSDRMHPSPRRR----SSTPRSRHSPS-FSRSPVRRR---PSYYRRRSPERRRPSYSRRR 306

Query: 349 PHCKSPHQLSSSG--QRRSSSPAQRRSPSPHRRKSPSLVRRHRSPSPAHYRRSPSPIKRH 408
              +SP++  S    +RRS SP +RRSP+P  R+S S +RR+RSPSP   RRSP  I+R 
Sbjct: 307 SQSRSPYRRGSPTPVRRRSRSPYRRRSPTPVHRRSRSPIRRYRSPSPITRRRSPLSIRRR 366

Query: 409 --PSRSPRQRSMSP----SSSPIQKWDRPSPHDHHITPSPLERRSPSSPARLKRSSLSQH 468
             PS   R+RS SP    S SP+++   PSP     +P P+ RRSP SP R +     + 
Sbjct: 367 RSPSLVRRRRSPSPMLHGSRSPVRR-RSPSP-IRRKSPLPVRRRSP-SPLRRRSPPPMRR 426

Query: 469 RSISPYDRSY--SSKERGNRSPVKVKSPRVRTSDEKSYSRRGKAKETEARTVENNNNRRE 520
           RS SP  + +  SS  R  RSP     P  R S   S   RGK+      +  +   RR 
Sbjct: 427 RSPSPVQQRHRRSSSPRRRRSP-----PSSRRSVTPS---RGKSPSPYQSSSMSPVQRRS 486

[Close]

BLAST of Cp4.1LG00g03600 vs. TAIR10
Match: AT2G29210.1 (AT2G29210.1 splicing factor PWI domain-containing protein)

HSP 1 Score: 235.0 bits (598), Expect = 1.4e-61
Identity = 211/447 (47.20%), Postives = 260/447 (58.17%), Query Frame = 1


Query: 49  RGTTADQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIRPWIATRATELLGFEDE- 108
           RGT+A+QDTRFSNKQAKL+KSQKF  EL+ LVD TKVKMDV++PWIATR TELLG EDE 
Sbjct: 7   RGTSAEQDTRFSNKQAKLMKSQKFAPELENLVDITKVKMDVMKPWIATRVTELLGIEDEV 66

Query: 109 ------------EVNGKEVQIQLTGFMEKNTVKFMKELWTLLLSAQKNASGVPQQFLDAK 168
                        VNGKE+QI LTGFMEKNT KFMKELWTLLLSAQ N SGVPQQFLDA+
Sbjct: 67  LINFIYGLLDGKVVNGKEIQITLTGFMEKNTGKFMKELWTLLLSAQNNPSGVPQQFLDAR 126

Query: 169 EEEIRKKKAETDFLANEIQKKREKEHKEIEEQRSKNMDDGAE-KVADFVLEPTSMNRSED 228
             E +KK+ E    ANEI KKRE + K IE    + +D G E K  + +    S +R ED
Sbjct: 127 AAETKKKQEE----ANEIMKKREGDKKNIEHDILRKIDSGVEHKETNGMDAKPSRDRPED 186

Query: 229 EEEAEKSNGVRGRSSD---------------GHKSRSMSRSPQRLRDSFSQERLSISPRR 288
              A++ NGV+ R  D               G +SRS+S++    + S+S ER S S  +
Sbjct: 187 GRRADEKNGVKERRRDLIPPRRGDASRSPLRGSRSRSISKTNSGSK-SYSGERKSRSTSQ 246

Query: 289 RDHRDSSSPRHR--SSDSRRSRSTSHRKSLSPVVHQLRSPSQHSSPSP---HCKSPHQLS 348
                S SPR R  S+  RRSRS S R+SLSP   ++ SP +  S SP   H +  H+  
Sbjct: 247 SSDA-SISPRKRRLSNSRRRSRSRSVRRSLSPRRRRIHSPFRSRSRSPIRRHRRPTHE-- 306

Query: 349 SSGQRRSSSPA-QRRSPSPHRRKSPSLVRRHRSPS-PAHYRRSPS-PIKRHPSRSPRQRS 408
             G+R+S +P+ +RRSPSP         RR RSPS PA  RRSPS P +RH S +P  R 
Sbjct: 307 --GRRQSPAPSRRRRSPSPP-------ARRRRSPSPPARRRRSPSPPARRHRSPTPPARQ 366

Query: 409 MSPSSSPIQKWDRPSPHDHHITPSP--LERRSPSSPARLKRSS---LSQHRSISPY---- 449
               S P ++   P P     +PSP    RRSPS PAR +RS      ++RS SP     
Sbjct: 367 RRSPSPPARRHRSPPPARRRRSPSPPARRRRSPSPPARRRRSPSPLYRRNRSPSPLYRRN 426

[Close]

BLAST of Cp4.1LG00g03600 vs. NCBI nr
Match: gi|449455178|ref|XP_004145330.1| (PREDICTED: serine/arginine repetitive matrix protein 1 [Cucumis sativus])

HSP 1 Score: 436.8 bits (1122), Expect = 6.8e-119
Identity = 298/438 (68.04%), Postives = 319/438 (72.83%), Query Frame = 1


Query: 49  RGTTADQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIRPWIATRATELLGFEDE- 108
           RGT+ADQDTRFSNKQAKLLK+QKFPAELDQLVDTTKVKMDVIRPWIATR TELLGFEDE 
Sbjct: 7   RGTSADQDTRFSNKQAKLLKTQKFPAELDQLVDTTKVKMDVIRPWIATRVTELLGFEDEV 66

Query: 109 ------------EVNGKEVQIQLTGFMEKNTVKFMKELWTLLLSAQKNASGVPQQFLDAK 168
                       EVNGKEVQIQLTGFMEKNTVKFMKELW LLLSAQKNASGVPQQFLDAK
Sbjct: 67  LINFIYGLLDGKEVNGKEVQIQLTGFMEKNTVKFMKELWILLLSAQKNASGVPQQFLDAK 126

Query: 169 EEEIRKKKAETDFLANEIQKKREKEHKEIEEQRSKNMDDGAEKVADFVLEPTSMN-RS-- 228
           EEEIRKKKAETDFLANEIQKKREKE++EIEEQRSKNMDDGAEKV++ VLE TS N RS  
Sbjct: 127 EEEIRKKKAETDFLANEIQKKREKENREIEEQRSKNMDDGAEKVSNSVLEHTSKNVRSRA 186

Query: 229 -----EDEEEAEKSNGVRGRSSDGHKSRSMSRSPQRLRDSFSQERLSISPRRRDHRDSSS 288
                EDEE AEK NGVRGRSSD HKSRSMSRSPQR R SFS+ R S SPRRRD RDS S
Sbjct: 187 MRNYPEDEEVAEKRNGVRGRSSDRHKSRSMSRSPQRRRRSFSRGRSSSSPRRRDRRDSFS 246

Query: 289 PRHRSSD-SRRSRSTSHRKSLSPVVHQLRSPSQHSSPSPHCKSPHQLSSSGQRRSSSPAQ 348
           PRHRSS   RRS STSHRKS SP V QLRSPSQHSSPSP  KSP++ SS  QR S SPA 
Sbjct: 247 PRHRSSHLMRRSGSTSHRKSRSPEVRQLRSPSQHSSPSPGRKSPYRSSSPMQRLSLSPAH 306

Query: 349 RRSPS-PHRRKSPSLVRRHRSPSPAHYRRSPSPIKRHPSRSPRQRSMSP-------SSSP 408
           RRSP+     +SPS  R  RS SP   RRSPSP++R  S SP+ R  SP       S SP
Sbjct: 307 RRSPALDKHNRSPSPTRHRRSLSPIRRRRSPSPVRRRRSPSPKWRRRSPSPEWRRRSPSP 366

Query: 409 IQKWDRPSPHDHHITPSPLERRSPSSPARLKRSSL--SQHRSISPYDRSYSSKERGNRSP 455
            ++   PSP     +PSP+ RR   SP R +RS     +HRS SPY R   S  R  RSP
Sbjct: 367 GRRRRSPSPIRRWRSPSPIRRRRSPSPIRRRRSPSPPRRHRSPSPYRRKSPSFVRRRRSP 426

[Close]

BLAST of Cp4.1LG00g03600 vs. NCBI nr
Match: gi|659115223|ref|XP_008457448.1| (PREDICTED: serine/arginine repetitive matrix protein 1 [Cucumis melo])

HSP 1 Score: 428.7 bits (1101), Expect = 1.8e-116
Identity = 317/515 (61.55%), Postives = 351/515 (68.16%), Query Frame = 1


Query: 49  RGTTADQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIRPWIATRATELLGFEDE- 108
           RGT+ADQDTRFSNKQAKLLK+QKFPAELDQLVDTTKVKMDVIRPWIATR TELLGFEDE 
Sbjct: 7   RGTSADQDTRFSNKQAKLLKTQKFPAELDQLVDTTKVKMDVIRPWIATRVTELLGFEDEV 66

Query: 109 ------------EVNGKEVQIQLTGFMEKNTVKFMKELWTLLLSAQKNASGVPQQFLDAK 168
                       EVNGKEVQIQLTGFMEKNTVKFMKELW LLLSAQKNASGVPQQFLDAK
Sbjct: 67  LINFIYGLLDGKEVNGKEVQIQLTGFMEKNTVKFMKELWILLLSAQKNASGVPQQFLDAK 126

Query: 169 EEEIRKKKAETDFLANEIQKKREKEHKEIEEQRSKNMDDGAEKVADFVLEPTSMN-RS-- 228
           EEEIRKKKAETDFLANEIQKKREKE++EIEEQRSKNMDDGAEKV++ VLE +S N RS  
Sbjct: 127 EEEIRKKKAETDFLANEIQKKREKENREIEEQRSKNMDDGAEKVSNSVLEHSSKNVRSRA 186

Query: 229 -----EDEEEAEKSNGVRGRSSDGHKSRSMSRSPQRLRDSFSQERLSISPRRRDHRDSSS 288
                EDEE AEK NGVRGRSSD HKSRSMS SPQR R SFS+ R S SPRRRDHRDS S
Sbjct: 187 MRNYPEDEEVAEKRNGVRGRSSDRHKSRSMSGSPQRRRRSFSRGRSSSSPRRRDHRDSFS 246

Query: 289 PRHRSSD-SRRSRSTSHRKSLSPVVHQLRSPSQHSSPSPHCKSPHQLSSSGQRRSSSPAQ 348
           PRHRSS   RRS STSHRKS SP V QLRSPSQHSSPSPH KSP+        RSSSP Q
Sbjct: 247 PRHRSSHLRRRSSSTSHRKSRSPKVRQLRSPSQHSSPSPHRKSPY--------RSSSPVQ 306

Query: 349 RRSPSPHRRKSPSLVRRHRSPSPAHYRRSPSPIKRHPSRSPRQRSMSPSSSPIQKWDR-- 408
           R S SP  R+SPSL + +RSPSP+ +RRS SP++R  S SP +R  SPS     KW R  
Sbjct: 307 RLSSSPTHRRSPSLDKHNRSPSPSRHRRSLSPVRRRRSPSPVRRRRSPS----PKWRRRS 366

Query: 409 PSPHDHHITPSPLERRSPSSPARLKRSSL--SQHRSISPYDRSYS-SKERGNRSPVKVK- 468
           PSP     +PSP+ RR   SP R +RS     + RS SP  R  S S  R  RSP  ++ 
Sbjct: 367 PSPEWRRRSPSPVRRRRSPSPGRRRRSPSPGRRRRSPSPIRRRRSPSPIRRRRSPSPIRR 426

Query: 469 ----SPRVRTSDEKSYSRRGKAKETEARTVENNNNRREVSDSDMEEG----YKHKTRSKG 524
               +P  R      Y R+  +     R+   ++ RR  S +           HK+RS  
Sbjct: 427 RRSPTPSRRHRSPSPYRRKSPSFVRRRRSPSPSHRRRSPSPAHYRRSPSPIKSHKSRSPV 486

[Close]

BLAST of Cp4.1LG00g03600 vs. NCBI nr
Match: gi|828323113|ref|XP_012573159.1| (PREDICTED: serine/arginine repetitive matrix protein 1 isoform X3 [Cicer arietinum])

HSP 1 Score: 303.9 bits (777), Expect = 6.8e-79
Identity = 236/442 (53.39%), Postives = 283/442 (64.03%), Query Frame = 1


Query: 49  RGTTADQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIRPWIATRATELLGFEDEE 108
           RGT+ADQDTRFSNKQAKLLKSQKF  EL+ LVD TKV M+++RPWI  + TELLGFEDE 
Sbjct: 7   RGTSADQDTRFSNKQAKLLKSQKFAPELEHLVDMTKVNMEIMRPWITRKVTELLGFEDEV 66

Query: 109 -------------VNGKEVQIQLTGFMEKNTVKFMKELWTLLLSAQKNASGVPQQFLDAK 168
                        VNGKEVQIQ+TGFMEKNT KFMKELWTLLLSAQKNASGVPQQFLDAK
Sbjct: 67  LINFIHSLLDAKIVNGKEVQIQITGFMEKNTGKFMKELWTLLLSAQKNASGVPQQFLDAK 126

Query: 169 EEEIRKKKAETDFLANEIQKKREKEHKEIEEQRSKNMDDGAE-KVADFVLEPTSMNRS-- 228
           EEE+ KKKAE+D + +EIQ+K+EKE KEI E+R K +D G + K  D   +PT   R   
Sbjct: 127 EEELLKKKAESDRITSEIQRKKEKESKEIMEERLKKLDGGLDAKDNDNASDPTLKPRDSG 186

Query: 229 ---EDEEEAEKSNGVRGR-------------SSDGHKSRSMSRSPQRLRDSFSQERLSIS 288
              +D +E +K NGVR R             S+    SRS+SRSP+    SFS+ R SIS
Sbjct: 187 HYVQDGKETDKRNGVRARNRGSPSRATSKSFSNSRSYSRSISRSPEARGRSFSR-RQSIS 246

Query: 289 PRRRDHRDSSSPRHRSSDSRRSRSTSHRKSLSPVVHQLRSP-SQHSSPSPHCKSPHQLSS 348
           PRRR      SP  R S SRRSRS+S  +S SP+   +RSP  +  +P+P          
Sbjct: 247 PRRRS--PQRSPHKRLSYSRRSRSSSDYESRSPIRRGVRSPFRRRRTPTP---------- 306

Query: 349 SGQRRSSSPA-QRRSPSPHRR-KSPSLVRRHRSPSPAHYRRSPSPIKRHPSRSPRQRSMS 408
             +RRS SP  +RRSPSP RR +SP LVRRHRSPSP   RRSPSP++R  S SP +R  S
Sbjct: 307 VKRRRSPSPVRRRRSPSPVRRHRSPYLVRRHRSPSPVQRRRSPSPVRRRRSPSPVRRRRS 366

Query: 409 PSSSPIQKWDRPSPHDHHITPSPLERRSPSSPARLKRSSLSQHRSISPYDRSYSSKERGN 456
           P  SP+++   PSP   H +PSP+ RR   SP R  RS   ++RS SP  R      RG 
Sbjct: 367 P--SPVRRRRSPSPMHIHRSPSPIRRRRSPSPMR-HRSPSFRYRSPSPVRR--VPPTRGR 426

[Close]

BLAST of Cp4.1LG00g03600 vs. NCBI nr
Match: gi|828323110|ref|XP_012573158.1| (PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Cicer arietinum])

HSP 1 Score: 303.9 bits (777), Expect = 6.8e-79
Identity = 236/442 (53.39%), Postives = 283/442 (64.03%), Query Frame = 1


Query: 49  RGTTADQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIRPWIATRATELLGFEDEE 108
           RGT+ADQDTRFSNKQAKLLKSQKF  EL+ LVD TKV M+++RPWI  + TELLGFEDE 
Sbjct: 7   RGTSADQDTRFSNKQAKLLKSQKFAPELEHLVDMTKVNMEIMRPWITRKVTELLGFEDEV 66

Query: 109 -------------VNGKEVQIQLTGFMEKNTVKFMKELWTLLLSAQKNASGVPQQFLDAK 168
                        VNGKEVQIQ+TGFMEKNT KFMKELWTLLLSAQKNASGVPQQFLDAK
Sbjct: 67  LINFIHSLLDAKIVNGKEVQIQITGFMEKNTGKFMKELWTLLLSAQKNASGVPQQFLDAK 126

Query: 169 EEEIRKKKAETDFLANEIQKKREKEHKEIEEQRSKNMDDGAE-KVADFVLEPTSMNRS-- 228
           EEE+ KKKAE+D + +EIQ+K+EKE KEI E+R K +D G + K  D   +PT   R   
Sbjct: 127 EEELLKKKAESDRITSEIQRKKEKESKEIMEERLKKLDGGLDAKDNDNASDPTLKPRDSG 186

Query: 229 ---EDEEEAEKSNGVRGR-------------SSDGHKSRSMSRSPQRLRDSFSQERLSIS 288
              +D +E +K NGVR R             S+    SRS+SRSP+    SFS+ R SIS
Sbjct: 187 HYVQDGKETDKRNGVRARNRGSPSRATSKSFSNSRSYSRSISRSPEARGRSFSR-RQSIS 246

Query: 289 PRRRDHRDSSSPRHRSSDSRRSRSTSHRKSLSPVVHQLRSP-SQHSSPSPHCKSPHQLSS 348
           PRRR      SP  R S SRRSRS+S  +S SP+   +RSP  +  +P+P          
Sbjct: 247 PRRRS--PQRSPHKRLSYSRRSRSSSDYESRSPIRRGVRSPFRRRRTPTP---------- 306

Query: 349 SGQRRSSSPA-QRRSPSPHRR-KSPSLVRRHRSPSPAHYRRSPSPIKRHPSRSPRQRSMS 408
             +RRS SP  +RRSPSP RR +SP LVRRHRSPSP   RRSPSP++R  S SP +R  S
Sbjct: 307 VKRRRSPSPVRRRRSPSPVRRHRSPYLVRRHRSPSPVQRRRSPSPVRRRRSPSPVRRRRS 366

Query: 409 PSSSPIQKWDRPSPHDHHITPSPLERRSPSSPARLKRSSLSQHRSISPYDRSYSSKERGN 456
           P  SP+++   PSP   H +PSP+ RR   SP R  RS   ++RS SP  R      RG 
Sbjct: 367 P--SPVRRRRSPSPMHIHRSPSPIRRRRSPSPMR-HRSPSFRYRSPSPVRR--VPPTRGR 426

[Close]

BLAST of Cp4.1LG00g03600 vs. NCBI nr
Match: gi|743876672|ref|XP_011035261.1| (PREDICTED: serine/arginine repetitive matrix protein 1 isoform X3 [Populus euphratica])

HSP 1 Score: 283.9 bits (725), Expect = 7.3e-73
Identity = 245/512 (47.85%), Postives = 297/512 (58.01%), Query Frame = 1


Query: 49  RGTTADQDTRFSNKQAKLLKSQKFPAELDQLVDTTKVKMDVIRPWIATRATELLGFEDE- 108
           RGT+ADQDTRFSNKQAKLLKSQKF  ELD LV+T KVKMD+I+PWIA R TELLGFEDE 
Sbjct: 7   RGTSADQDTRFSNKQAKLLKSQKFAPELDHLVNTRKVKMDIIKPWIANRVTELLGFEDEV 66

Query: 109 ------------EVNGKEVQIQLTGFMEKNTVKFMKELWTLLLSAQKNASGVPQQFLDAK 168
                       EVNGKEVQI LTGFMEKNT KFMKELWTLLLSA KN SGVPQQFLDAK
Sbjct: 67  LINFVYGLLDGKEVNGKEVQISLTGFMEKNTGKFMKELWTLLLSAGKNESGVPQQFLDAK 126

Query: 169 EEEIRKKKAETDFLANEIQKKR--EKEHKEIEEQRSKNMDDGAEKVADFVLEPTSMN--- 228
           EEE RKK+AE D +ANEIQKK+  E+E +E+E +RSK MDD  EK A+  +EP S +   
Sbjct: 127 EEETRKKQAEVDRIANEIQKKKVKEEESRELERERSKKMDDEVEKKANNAMEPASKHMLP 186

Query: 229 -----RSEDEEEAEKSNGVRGR----------------SSDGHKSRSMSRSPQRL-RDSF 288
                R+EDE++    NG +GR                S  GHKSRS+SRSP+   R S 
Sbjct: 187 KGSSGRAEDEKDTGTRNGAKGRKGGSTSRISRSVSNSRSHSGHKSRSVSRSPEAQGRRSM 246

Query: 289 SQERLSISPRRRDHRDSSSPRHRSSDSRRSRSTSHRKSLSPVVHQLRSPSQHSSPSPHCK 348
           S +R+  SPRRR     + PR RSS S+    T   +S SPV  +LRSP +  SPSP   
Sbjct: 247 SSDRVYRSPRRRS---ITPPRRRSSYSKH---TFRHRSPSPVRRRLRSPFRRRSPSPL-- 306

Query: 349 SPHQLSSSGQRRSSSPAQRRSPSP-HRRKSPSLVRRHRSPSPAHYRRSPSPIKRHPSRSP 408
             H  S S  RR      RRSPSP  RR+SPS VR  RSPSP  +RRSPSP++R  S SP
Sbjct: 307 --HDRSLSPVRR------RRSPSPVRRRRSPSPVRHCRSPSPVRHRRSPSPVRRRRSPSP 366

Query: 409 RQRSMSPSSSPIQKWDRPSPHDHHITPSPLERRSPSSPARLKRSS-LSQHRSISPYDR-- 468
            Q S S           PSP  H  +PS + RR   SP R  RS  L +HR      R  
Sbjct: 367 IQHSRS-----------PSPVRHRRSPSLIRRRKYPSPIRHGRSPLLVRHRRSPSLGRHI 426

Query: 469 SYSSKERGNRSPVKVK-SPRVRTSD----EKSYSRRGKAKETEARTVENNNN----RREV 508
           S S   RG+ SP++ K SP +R        + Y R        +  + + ++    +R  
Sbjct: 427 SPSFVSRGSPSPIRRKSSPFMRRKSPSPVRRRYQRSPSTPHHMSPPIRHRSSVISRKRSP 486

The following BLAST results are available for this feature:

BLAST of Cp4.1LG00g03600 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YJQ5_SCHPO	6.1e-19	31.10	PWI domain-containing protein C825.05c OS=Schizosaccharomyces pombe (strain 972 ...	[more]
SRRM1_CHICK	8.2e-16	30.58	Serine/arginine repetitive matrix protein 1 OS=Gallus gallus GN=SRRM1 PE=2 SV=1	[more]
SRRM1_MOUSE	1.3e-13	29.98	Serine/arginine repetitive matrix protein 1 OS=Mus musculus GN=Srrm1 PE=1 SV=2	[more]
SRRM1_HUMAN	8.5e-13	29.60	Serine/arginine repetitive matrix protein 1 OS=Homo sapiens GN=SRRM1 PE=1 SV=2	[more]
SRRM1_PONAB	8.5e-13	29.60	Serine/arginine repetitive matrix protein 1 OS=Pongo abelii GN=SRRM1 PE=2 SV=1	[more]

BLAST of Cp4.1LG00g03600 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVE0_CUCSA	4.7e-119	68.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G524700 PE=4 SV=1	[more]
A0A061GWT7_THECC	9.0e-70	47.22	Splicing factor PWI domain-containing protein, putative isoform 1 OS=Theobroma c...	[more]
A0A061GXL7_THECC	9.0e-70	47.22	Splicing factor PWI domain-containing protein, putative isoform 2 OS=Theobroma c...	[more]
B9HPD0_POPTR	1.2e-69	47.95	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s04160g PE=4 SV=2	[more]
A0A0D2VIU6_GOSRA	2.0e-69	49.05	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G262700 PE=4 SV=1	[more]

BLAST of Cp4.1LG00g03600 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G29210.1	1.4e-61	47.20	splicing factor PWI domain-containing protein	[more]

BLAST of Cp4.1LG00g03600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449455178\|ref\|XP_004145330.1\|	6.8e-119	68.04	PREDICTED: serine/arginine repetitive matrix protein 1 [Cucumis sativus]	[more]
gi\|659115223\|ref\|XP_008457448.1\|	1.8e-116	61.55	PREDICTED: serine/arginine repetitive matrix protein 1 [Cucumis melo]	[more]
gi\|828323113\|ref\|XP_012573159.1\|	6.8e-79	53.39	PREDICTED: serine/arginine repetitive matrix protein 1 isoform X3 [Cicer arietin...	[more]
gi\|828323110\|ref\|XP_012573158.1\|	6.8e-79	53.39	PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Cicer arietin...	[more]
gi\|743876672\|ref\|XP_011035261.1\|	7.3e-73	47.85	PREDICTED: serine/arginine repetitive matrix protein 1 isoform X3 [Populus euphr...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006397	mRNA processing

Vocabulary: **INTERPRO**
Term	Definition
IPR002483	PWI_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
biological_process	GO:0009294	DNA mediated transformation
biological_process	GO:0008380	RNA splicing
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG00g03600.1	Cp4.1LG00g03600.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002483	PWI domain	GENE3D	G3DSA:1.20.1390.10		coord: 67..161 score: 1.9
IPR002483	PWI domain	PFAM	PF01480	PWI	coord: 88..144 score: 6.7
IPR002483	PWI domain	SMART	SM00311	pwi_2	coord: 82..143 score: 2.5
IPR002483	PWI domain	PROFILE	PS51025	PWI	coord: 69..154 score: 32
IPR002483	PWI domain	unknown	SSF101233	PWI domain	coord: 67..162 score: 2.88
None	No IPR available	unknown	Coil	Coil	coord: 152..190 score: -coord: 535..579 scor
None	No IPR available	PANTHER	PTHR23148	SERINE/ARGININE REGULATED NUCLEAR MATRIX PROTEIN	coord: 49..460 score: 1.0E-82coord: 569..578 score: 1.0
None	No IPR available	PANTHER	PTHR23148:SF0	SERINE/ARGININE REPETITIVE MATRIX PROTEIN 1	coord: 49..460 score: 1.0E-82coord: 569..578 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG00g03600	Cucsa.117660	Cucumber (Gy14) v1	cgycpeB0282
Cp4.1LG00g03600	CmaCh13G001060	Cucurbita maxima (Rimu)	cmacpeB211
Cp4.1LG00g03600	CmoCh13G001050	Cucurbita moschata (Rifu)	cmocpeB181
Cp4.1LG00g03600	Cla008217	Watermelon (97103) v1	cpewmB009
Cp4.1LG00g03600	Csa1G524700	Cucumber (Chinese Long) v2	cpecuB001
Cp4.1LG00g03600	MELO3C020607	Melon (DHL92) v3.5.1	cpemeB005
Cp4.1LG00g03600	CSPI01G23330	Wild cucumber (PI 183967)	cpecpiB001
Cp4.1LG00g03600	Lsi02G013370	Bottle gourd (USVL1VR-Ls)	cpelsiB008
Cp4.1LG00g03600	CsaV3_1G034540	Cucumber (Chinese Long) v3	cpecucB0001
Cp4.1LG00g03600	Bhi08G000485	Wax gourd	cpewgoB0013
Cp4.1LG00g03600	CsGy1G022830	Cucumber (Gy14) v2	cgybcpeB003
Cp4.1LG00g03600	Carg20638	Silver-seed gourd	carcpeB0530

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG00g03600	Cp4.1LG20g08360	Cucurbita pepo (Zucchini)	cpecpeB008

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG00g03600	Watermelon (Charleston Gray)	cpewcgB015
Cp4.1LG00g03600	Melon (DHL92) v3.6.1	cpemedB007