Cp4.1LG00g02370 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG00g02370
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Thioredoxin family protein
Location	Cp4.1LG00 : 7200836 .. 7204361 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCCTCCATTTCAACATCACCTTATCCTCTCCTCACCTCAGAGCGCTCCAATCGCTTCGCCGTGAATGATTCATCTTCATCTAGGTTGTTTTCCTCCTCGTCTCTACAGCTACCGGTTCAGCTTCGATGTGTTCGACTTGGAAACTGTGGGATTTCTGCTCAGTCGCGGTCTCGAATCTTCCCTGTGGTAACAATCTATTTCCTTAGATCTGTGTATTGTTTTTATGGAGGAACCTGATAAAGAATTTGGAATCCTTGGACTTTCCTTTTGTTCTTATTGTTGCTTTTGTTTCGCATCTAACCTTCAGAGACTTATCGTTAATTTTTGTGCCTAATTCTGGTGAACGAAGTTTATGTGATGTAATTGTTTTTCTTATACTTCTGGTGTTCCTTTAATTCGATTTTTGATTGTATCCGTGTTTGCTTCTGTTTTACGTAGAACTAGAAACTACATTGTTCGTCTACCTAAGAAGAAACTATAATCTATCTGGTTCAATTAGTTTTAGTTTTATAAGAAAAATTAAGTTCTTAAGTAGTCAGAGTAATTAGAAGGATTGCATTTCCCTTTTTGTAGAGATCCCCTTCTTCTTGCTCTTAAAAGCTGCATTAATATTTTTCCCGATTCTCAAGTTGCTTGTTTAAATATGGATGACAATTTGTGTTCAAACTGCTGTAATGAATAACGATGGGATTTGTTTGTACAAATTAACTTCTGTAGGTCAAAGCCAAGAACCAAACATTTTCTTCCTTTGATGATTTATTGGCCAACTCTGACAAGCCCGTGTTAGTCGACTTCTATGCAACCTGGTTGGTCTCTTTATCTCACTCACATGCACACACCTATTTTCAAGCTACTCTTTCTACAAGAGCATTNATTGTATTTCTTTTTCCTTTTTATATATATTTTAATTTTATATTTTATATTTTTCTCGTTGATTCAAAAGATGAATTTAACTATATTTTTCCGCTTCCCTTTGGCTTCTCCGTATAGCCAAAACAGACGACAAAATTCCTCTATCGACATTGTAGGAGCGAGCACACAGAGCTTCACATGGCGGCCTCCATTTCAACATCACCTTATCCTCTCCTCACCTCAGAGCGCTCCAATCGCTTCGCCGTGAATGATTCATCTTCATCTAGGTTGTTTTCCTCCTCGTCTCTACAGCTACCGGTTCAGCTTCGATGTGTTCGACTTGGAAACTGTGGGATTTCTGCTCAGTCGCGGTCTCGAATCTTCCCTGTGGTAACAATCTATTTCCTTAGATCTGTGTATTGTTTTTATGGAGGAACCTGATAAAGAATTTGGAATCCTTGGACTTTCCTTTTGTTCTTATTGTTGCTTTTGTTTCGCATCTAACCTTCAGAGACTTATCGTTAATTTTTGTGCCTAATTCTGGTGAACGAAGTTTATGTGATGTAATTGTTTTTCTTATACTTCTGGTGTTCCTTTAATTCGATTTTTGATTGTATCCGTGTTTGCTTCTGTTTTACGTAGAACTAGAAACTACATTGTTCGTCTACCTAAGAAGAAACTATAATCTATCTGGTTCAATTAGTTTTAGTTTTATAAGAAAAATTAAGTTCTTAAGTAGTCAGAGTAATTAGAAGGATTGCATTTCCCTTTTTGTAGAGATCCCCTTCTTCTTGCTCTTAAAAGCTGCATTAATATTTTTCCCGATTCTCAAGTTGCTTGTTTAAATATGGATGACAATTTGTGTTCAAACTGCTGTAATGAATAACGATGGGATTTGTTTGTACAAATTAACTTCTGTAGGTCAAAGCCAAGAACCAAACATTTTCTTCCTTTGATGATTTATTGGCCAACTCTGACAAGCCCGTGTTAGTCGACTTCTATGCAACCTGGTTGGTCTCTTTATCTCACTCACATGCACACACCTATTTTCAAGCTACTCTTTCTACAAGAGCATTGCAGGCATGGCTTTATATCTCACCCCACTTCACTTGTGGATGATTCCACCCCACGTTAATTTATGGAATGATTATGGATTTTTTTAGTAAGGAATACATCTCTATTGCTATGAGGCCTTTTGGGAAAGCCCAAAGCAATGCCATGAGAGCTTATTCTCAAAGTGGACAATATCATACCATTGTGAGAGTTGTGGTTCCTAACCGATAATATTAATTTATGGGAATCATGTTTTTAATATATAATTACAAAATAAGCCGTTGTTTCTCCTGAGCAATTTACCTAGTGAATATGATTCAGTTAGCAAGTTAGTGCTTGGCTGCTGAGGAGAACAGGGGTTGAATTGTAGAACAGATAATTTTCTTATTCAAAAAGGTAGTTTTTAAATGATGGGTAAACATAGCTGATATGAACTAGTGTCACATGAATTGAAATATCTTTTGATAATTTCAACATTTTCTTCATATCTTCATTGAAGTATATTGTATGATTGATGTCTCTTGGTTTATATCCATAGCTCCTCGTTTGCAGGTGTGGTCCTTGTCAATTCATGGTTCCAATTCTTGAAAAAGTTAGTGATGCGCTGAGTGACACAGTCCAGGTGGTCAAGATTGACACTGAGAAATATCCTGTCATCGCTGATAAATACAAAATAGAGGCATTACCTACGTTTATCCTCTTCAAAGATGGAAAACCCCTTGACCGATTCGTAAGTGAATGCTTTGTCCTATTTCTAGTCATTTGGAGAGATATTGAATGTACAACTAACTCTATATGCGTCAAGAAATCACATATATATGTTTCAGAATCTTTGTTCAATTGCATCTTTTTTCTTTCTGAATTTGAACGAAAACGGGAAGTTTTTCCAAGAAATCCTGTAATTACACTCGAAGTTTCTACTATGTTCTATCCTTTATTTCTCTGAAACCATTATCCACCGTATCTTTCCTCAATTCATGCACCCAGTTTAGTTTCAAAGAGTTAAAAGGTATGCCCATATTTTCAATTTGATCAAGCCGGGGTGAATTTGACCCACGATCAAAATATGTCGAAACAAGGAAAAGAAGTGAAGGAAAAACTTGGAGGAGAGATCTTTTGGAACAAAAAGACCTTCAGCACTTGGCTTTTCAATTTTGTTTGTTGTAGTTGTGAAAAGAGTATATATCTTAGGAATATTTATAGCAGAGAAAGCACTGACTAGTGTCCTAAACTTTTTCCCCAAGTTAAGAAACATTAACAATCTTTCTTCCGAATTAAAAGGACAAAACTTGTTCACAATTCTCTTAAACTATTCCATAAATCCATAAATTAGTAACTTGGCTTACAAGTACATCCTCTTTCTATCTAGACTACAACTCTTTAGACTACAACTCTTTCACCTTTTCTTTTGGTTTTAGTGAGATGCCATAAACAATCTTGTAACTTTTTTAGACATTCCGGTTGAAATGTCAGTAACGGGCTTTCAGTTTCTTGTGCTTAGATTATTTATTGTTTATTTTAAACATGCATGCGGATTATCTATATGCAGGAAGGAGCTTTGGCTGCTGGTGAACTCGTTCAACGCATTGAAAATTCCCTGAAGGTTAAGCAATAA

mRNA sequence

ATGGCGGCCTCCATTTCAACATCACCTTATCCTCTCCTCACCTCAGAGCGCTCCAATCGCTTCGCCGTGAATGATTCATCTTCATCTAGGTTGTTTTCCTCCTCGTCTCTACAGCTACCGGTTCAGCTTCGATGTGTTCGACTTGGAAACTGTGGGATTTCTGCTCAGTCGCGGTCTCGAATCTTCCCTGTGGTCAAAGCCAAGAACCAAACATTTTCTTCCTTTGATGATTTATTGGCCAACTCTGACAAGCCCGTGTTAGTCGACTTCTATGCAACCTGGAGCGAGCACACAGAGCTTCACATGGCGGCCTCCATTTCAACATCACCTTATCCTCTCCTCACCTCAGAGCGCTCCAATCGCTTCGCCGTGAATGATTCATCTTCATCTAGGTTGTTTTCCTCCTCGTCTCTACAGCTACCGGTTCAGCTTCGATGTGTTCGACTTGGAAACTGTGGGATTTCTGCTCAGTCGCGGTCTCGAATCTTCCCTGTGGTCAAAGCCAAGAACCAAACATTTTCTTCCTTTGATGATTTATTGGCCAACTCTGACAAGCCCGTGTTAGTCGACTTCTATGCAACCTGTGATGCGCTGAGTGACACAGTCCAGGTGGTCAAGATTGACACTGAGAAATATCCTGTCATCGCTGATAAATACAAAATAGAGGCATTACCTACGTTTATCCTCTTCAAAGATGGAAAACCCCTTGACCGATTCGAAGGAGCTTTGGCTGCTGGTGAACTCGTTCAACGCATTGAAAATTCCCTGAAGGTTAAGCAATAA

Coding sequence (CDS)

ATGGCGGCCTCCATTTCAACATCACCTTATCCTCTCCTCACCTCAGAGCGCTCCAATCGCTTCGCCGTGAATGATTCATCTTCATCTAGGTTGTTTTCCTCCTCGTCTCTACAGCTACCGGTTCAGCTTCGATGTGTTCGACTTGGAAACTGTGGGATTTCTGCTCAGTCGCGGTCTCGAATCTTCCCTGTGGTCAAAGCCAAGAACCAAACATTTTCTTCCTTTGATGATTTATTGGCCAACTCTGACAAGCCCGTGTTAGTCGACTTCTATGCAACCTGGAGCGAGCACACAGAGCTTCACATGGCGGCCTCCATTTCAACATCACCTTATCCTCTCCTCACCTCAGAGCGCTCCAATCGCTTCGCCGTGAATGATTCATCTTCATCTAGGTTGTTTTCCTCCTCGTCTCTACAGCTACCGGTTCAGCTTCGATGTGTTCGACTTGGAAACTGTGGGATTTCTGCTCAGTCGCGGTCTCGAATCTTCCCTGTGGTCAAAGCCAAGAACCAAACATTTTCTTCCTTTGATGATTTATTGGCCAACTCTGACAAGCCCGTGTTAGTCGACTTCTATGCAACCTGTGATGCGCTGAGTGACACAGTCCAGGTGGTCAAGATTGACACTGAGAAATATCCTGTCATCGCTGATAAATACAAAATAGAGGCATTACCTACGTTTATCCTCTTCAAAGATGGAAAACCCCTTGACCGATTCGAAGGAGCTTTGGCTGCTGGTGAACTCGTTCAACGCATTGAAAATTCCCTGAAGGTTAAGCAATAA

Protein sequence

MAASISTSPYPLLTSERSNRFAVNDSSSSRLFSSSSLQLPVQLRCVRLGNCGISAQSRSRIFPVVKAKNQTFSSFDDLLANSDKPVLVDFYATWSEHTELHMAASISTSPYPLLTSERSNRFAVNDSSSSRLFSSSSLQLPVQLRCVRLGNCGISAQSRSRIFPVVKAKNQTFSSFDDLLANSDKPVLVDFYATCDALSDTVQVVKIDTEKYPVIADKYKIEALPTFILFKDGKPLDRFEGALAAGELVQRIENSLKVKQ

Homology

[Close]

BLAST of Cp4.1LG00g02370 vs. Swiss-Prot
Match: TRXY1_ARATH (Thioredoxin Y1, chloroplastic OS=Arabidopsis thaliana GN=At1g76760 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 5.3e-35
Identity = 93/172 (54.07%), Postives = 114/172 (66.28%), Query Frame = 1


Query: 105 SISTSPYPLLTSERSNRFAVNDSSSSRLFSSSSLQLPVQLRCVRLGNCGI-SAQSRSRIF 164
           S+S+S  P L S+ S+  +   + +SR  S+   Q PV  R VR G+    S  S +R  
Sbjct: 5   SLSSSTVPSLNSKESSGVS---AFASRSISAVKFQFPV--RRVRTGDLKFPSLSSTTRCT 64

Query: 165 PV-VKAKNQTFSSFDDLLANSDKPVLVDFYAT---------------CDALSDTVQVVKI 224
           P  ++AK QTF SF+DLL NSDKPVLVD+YAT                + L D +QVVKI
Sbjct: 65  PRRIEAKKQTFDSFEDLLVNSDKPVLVDYYATWCGPCQFMVPILNEVSETLKDKIQVVKI 124

Query: 225 DTEKYPVIADKYKIEALPTFILFKDGKPLDRFEGALAAGELVQRIENSLKVK 260
           DTEKYP IA+KYKIEALPTFILFKDG+P DRFEGAL A +L+QRIE+SLKVK
Sbjct: 125 DTEKYPSIANKYKIEALPTFILFKDGEPCDRFEGALTAKQLIQRIEDSLKVK 171

[Close]

BLAST of Cp4.1LG00g02370 vs. Swiss-Prot
Match: TRXY2_ARATH (Thioredoxin Y2, chloroplastic OS=Arabidopsis thaliana GN=At1g43560 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 7.6e-34
Identity = 96/177 (54.24%), Postives = 115/177 (64.97%), Query Frame = 1


Query: 102 MAASISTSPY-PLLTSERSNRFAVNDSSSSRLFSSSSLQLPVQLRCVRLGNCGISAQSRS 161
           MA S++T+   P  T E SN      +S SR  SS  ++LP Q+R  R G+   S  S +
Sbjct: 1   MAISLATAYISPCFTPESSN-----SASPSRTLSS--VRLPSQIR--RFGSVQ-SPSSST 60

Query: 162 RIFPVV--KAKNQTFSSFDDLLANSDKPVLVDFYAT---------------CDALSDTVQ 221
           R  P+    AK QTF+SFDDLL NSDKPVLVDFYAT                + L D + 
Sbjct: 61  RFAPLTVRAAKKQTFNSFDDLLQNSDKPVLVDFYATWCGPCQLMVPILNEVSETLKDIIA 120

Query: 222 VVKIDTEKYPVIADKYKIEALPTFILFKDGKPLDRFEGALAAGELVQRIENSLKVKQ 261
           VVKIDTEKYP +A+KY+IEALPTFILFKDGK  DRFEGAL A +LV+RIENSL+VKQ
Sbjct: 121 VVKIDTEKYPSLANKYQIEALPTFILFKDGKLWDRFEGALPANQLVERIENSLQVKQ 167

[Close]

BLAST of Cp4.1LG00g02370 vs. Swiss-Prot
Match: TRXY_ORYSJ (Thioredoxin Y, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0963400 PE=3 SV=2)

HSP 1 Score: 123.2 bits (308), Expect = 4.1e-27
Identity = 67/119 (56.30%), Postives = 84/119 (70.59%), Query Frame = 1


Query: 155 SAQSRSRIFPVVKAKNQTFSSFDDLLANSDKPVLVDFYAT---------------CDALS 214
           +A SR      V+AK QTFSSFD+LL  S+KPVLVDFYAT                + L 
Sbjct: 48  AAPSRRGATLRVQAKKQTFSSFDELLEKSEKPVLVDFYATWCGPCQYMVPILQEVSEKLG 107

Query: 215 DTVQVVKIDTEKYPVIADKYKIEALPTFILFKDGKPLDRFEGALAAGELVQRIENSLKV 259
           D +QVVKIDTEKY  IA++Y+IEALPTFI+FK+GKP  RFEGAL A +L+Q+IE++L+V
Sbjct: 108 DKIQVVKIDTEKYTSIANRYQIEALPTFIIFKNGKPCHRFEGALPANQLIQQIESALEV 166

[Close]

BLAST of Cp4.1LG00g02370 vs. Swiss-Prot
Match: THIO1_SYNY3 (Thioredoxin-like protein slr0233 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0233 PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.1e-16
Identity = 45/101 (44.55%), Postives = 66/101 (65.35%), Query Frame = 1


Query: 168 AKNQTFSSFDDLLANSDKPVLVDFYAT----CDALS-----------DTVQVVKIDTEKY 227
           A  + F++F ++LA S KPVLVDFYAT    C  ++             +QVVKIDT+KY
Sbjct: 2   AVKKQFANFAEMLAGSPKPVLVDFYATWCGPCQMMAPILEQVGSHLRQQIQVVKIDTDKY 61

Query: 228 PVIADKYKIEALPTFILFKDGKPLDRFEGALAAGELVQRIE 254
           P IA +Y+I++LPT +LFK G+P+ R EG   A +L+Q+++
Sbjct: 62  PAIATQYQIQSLPTLVLFKQGQPVHRMEGVQQAAQLIQQLQ 102

[Close]

BLAST of Cp4.1LG00g02370 vs. Swiss-Prot
Match: TRXM3_ORYSJ (Thioredoxin M3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os04g0430800 PE=2 SV=4)

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-07
Identity = 33/104 (31.73%), Postives = 52/104 (50.00%), Query Frame = 1


Query: 168 AKNQTFSSFDDLLANSDKPVLVDFYAT---------------CDALSDTVQVVKIDTEKY 227
           AK  T  S+++ +  SD PVL++F+A+                   +  ++  K+DT+ Y
Sbjct: 67  AKTITACSWNEYVICSDIPVLIEFWASWCGPCRMVHRIVDEIAQEYAGRIKCYKLDTDDY 126

Query: 228 PVIADKYKIEALPTFILFKDGKPLDRFEGALAAGELVQRIENSL 257
           P +A  Y IE +PT +LFKDG+      G L     V+ IE S+
Sbjct: 127 PQVATSYSIERIPTVLLFKDGEKTHSITGTLPKAVYVRAIEKSI 170

[Close]

BLAST of Cp4.1LG00g02370 vs. TrEMBL
Match: A0A0A0K7X7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014850 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.0e-53
Identity = 126/174 (72.41%), Postives = 131/174 (75.29%), Query Frame = 1


Query: 102 MAASISTSPYPLLTSERSNRFAVNDSSSSRLFSSSSLQLPVQLRCVRLGNCGISAQSRSR 161
           MAAS STSPYP+LTS RSNR     SSSS L  SSSL LP+QLR   L N  IS  S S 
Sbjct: 1   MAASFSTSPYPILTSHRSNRLPAYHSSSSSLSFSSSLHLPLQLRRFPLANTRISPPSSSP 60

Query: 162 IFPVVKAKNQTFSSFDDLLANSDKPVLVDFYAT----CD-----------ALSDTVQVVK 221
            FPVVKAKNQTFSSFDDLLANSD PVLVDFYAT    C            AL D VQVVK
Sbjct: 61  SFPVVKAKNQTFSSFDDLLANSDTPVLVDFYATWCGPCQFMVPILEQVSAALIDKVQVVK 120

Query: 222 IDTEKYPVIADKYKIEALPTFILFKDGKPLDRFEGALAAGELVQRIENSLKVKQ 261
           IDTEKYP IADKY+IEALPTFILFKDGKPLDRFEGALAA EL+QRIE+SLKVKQ
Sbjct: 121 IDTEKYPAIADKYRIEALPTFILFKDGKPLDRFEGALAARELIQRIEDSLKVKQ 174

[Close]

BLAST of Cp4.1LG00g02370 vs. TrEMBL
Match: M5VN05_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012274mg PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.4e-47
Identity = 110/177 (62.15%), Postives = 128/177 (72.32%), Query Frame = 1


Query: 102 MAASISTSPYPLLTSERSNRFAVNDSSS---SRLFSSSSLQLPVQLRCVRLGNCGISAQS 161
           MA S++ S      S+R+ R A   SSS   S+L SSSSLQ+PVQLRCVR+G  G+SA S
Sbjct: 1   MAVSVTASTISSFRSDRTTRIAATSSSSASCSKLSSSSSLQVPVQLRCVRIGRSGVSAPS 60

Query: 162 RSRIFPVVKAKNQTFSSFDDLLANSDKPVLVDFYAT----CD-----------ALSDTVQ 221
           R RI PVV AK QTFSSF+DLLA SDKP+LVDFYAT    C             L+D +Q
Sbjct: 61  RPRILPVVAAKKQTFSSFEDLLATSDKPILVDFYATWCGPCQFMAPILNEVSITLNDKIQ 120

Query: 222 VVKIDTEKYPVIADKYKIEALPTFILFKDGKPLDRFEGALAAGELVQRIENSLKVKQ 261
           VVKIDTEKYP IADKY I+ALPTFI+FKDG+P DRFEGAL A +LV+RIE +LKVKQ
Sbjct: 121 VVKIDTEKYPSIADKYNIQALPTFIIFKDGEPYDRFEGALTADQLVERIETTLKVKQ 177

[Close]

BLAST of Cp4.1LG00g02370 vs. TrEMBL
Match: D7SRD7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0072g00400 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.0e-45
Identity = 109/175 (62.29%), Postives = 127/175 (72.57%), Query Frame = 1


Query: 102 MAASISTSPYPLLTSERSNRFAVNDSS-SSRLFSSSSLQLPVQLRCVRLGNCGISAQSRS 161
           MA S++ S    L S+R    A + SS SS+LFSSS LQ P QLR +R+GN GIS+ SR 
Sbjct: 1   MATSLTFSTVRALNSQRPTPLAFSSSSPSSKLFSSSPLQFPRQLRPIRIGNNGISSPSRP 60

Query: 162 RIFPVVKAKNQTFSSFDDLLANSDKPVLVDFYAT----CD-----------ALSDTVQVV 221
           R  PVV+AK QTFSS D+LLANS+KPVLVDFYAT    C            +L D +QVV
Sbjct: 61  RTLPVVEAKKQTFSSLDELLANSEKPVLVDFYATWCGPCQFMVPILNEVGASLKDKIQVV 120

Query: 222 KIDTEKYPVIADKYKIEALPTFILFKDGKPLDRFEGALAAGELVQRIENSLKVKQ 261
           KIDTEKYP IADKY+IEALPTFI+FKDGKP DRFEGAL A +L+QRIE +LKVKQ
Sbjct: 121 KIDTEKYPSIADKYRIEALPTFIIFKDGKPYDRFEGALTADQLIQRIETTLKVKQ 175

[Close]

BLAST of Cp4.1LG00g02370 vs. TrEMBL
Match: W9S850_9ROSA (Thioredoxin Y1 OS=Morus notabilis GN=L484_017852 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 6.3e-43
Identity = 110/180 (61.11%), Postives = 128/180 (71.11%), Query Frame = 1


Query: 102 MAASISTSPYPLLTSERSNRFAVNDSSSS----RLFS-SSSLQLPVQLRCVRLGNCGISA 161
           MA S+STS  P L S+RSNRFA +  SSS    RL S SSSL  P+     R+G  G+S+
Sbjct: 1   MAVSVSTSSIPSLNSDRSNRFATSAISSSSPGLRLSSYSSSLLFPL-----RIGTGGLSS 60

Query: 162 QSR-SRIFPVVKAKNQTFSSFDDLLANSDKPVLVDFYAT----CD-----------ALSD 221
            SR  RI PVVKAK QTFSSFDDLLA SDKPVLVDFYAT    C            +L+D
Sbjct: 61  SSRRKRILPVVKAKKQTFSSFDDLLAKSDKPVLVDFYATWCGPCQFMVPILNEVSASLND 120

Query: 222 TVQVVKIDTEKYPVIADKYKIEALPTFILFKDGKPLDRFEGALAAGELVQRIENSLKVKQ 261
            +QVVKIDTEKYP IA+KY IEALPTFI+FKD KP DRFEGA+ A +L+QRIE++LK+KQ
Sbjct: 121 KIQVVKIDTEKYPSIANKYNIEALPTFIIFKDAKPFDRFEGAMTAAQLIQRIEDALKIKQ 175

[Close]

BLAST of Cp4.1LG00g02370 vs. TrEMBL
Match: A0A067GVL1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030351mg PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.9e-40
Identity = 103/175 (58.86%), Postives = 120/175 (68.57%), Query Frame = 1


Query: 102 MAASISTSPYPLLTSERSNRFAVNDSSSSRLFSSSSLQLPVQLRCVRLGNCG-ISAQSRS 161
           MA S++ S  P L ++      V+ SSSS+L   SSLQ PVQLR +R+ N    S+ S+ 
Sbjct: 1   MAISLTASTIPSLNAK------VSASSSSKLSRLSSLQFPVQLRRLRISNGSRTSSSSKR 60

Query: 162 RIFPVVKAKNQTFSSFDDLLANSDKPVLVDFYAT----CD-----------ALSDTVQVV 221
           R+ PVV+AK QTFSS DDLL  SDKPVLVDFYAT    C            AL D +QVV
Sbjct: 61  RLLPVVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVV 120

Query: 222 KIDTEKYPVIADKYKIEALPTFILFKDGKPLDRFEGALAAGELVQRIENSLKVKQ 261
           KIDTEKYP IAD Y+IEALPTFILFKDGKP DRFEGA +  +L+QRIENSL VKQ
Sbjct: 121 KIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLSVKQ 169

[Close]

BLAST of Cp4.1LG00g02370 vs. TAIR10
Match: AT1G76760.1 (AT1G76760.1 thioredoxin Y1)

HSP 1 Score: 149.4 bits (376), Expect = 3.0e-36
Identity = 93/172 (54.07%), Postives = 114/172 (66.28%), Query Frame = 1


Query: 105 SISTSPYPLLTSERSNRFAVNDSSSSRLFSSSSLQLPVQLRCVRLGNCGI-SAQSRSRIF 164
           S+S+S  P L S+ S+  +   + +SR  S+   Q PV  R VR G+    S  S +R  
Sbjct: 5   SLSSSTVPSLNSKESSGVS---AFASRSISAVKFQFPV--RRVRTGDLKFPSLSSTTRCT 64

Query: 165 PV-VKAKNQTFSSFDDLLANSDKPVLVDFYAT---------------CDALSDTVQVVKI 224
           P  ++AK QTF SF+DLL NSDKPVLVD+YAT                + L D +QVVKI
Sbjct: 65  PRRIEAKKQTFDSFEDLLVNSDKPVLVDYYATWCGPCQFMVPILNEVSETLKDKIQVVKI 124

Query: 225 DTEKYPVIADKYKIEALPTFILFKDGKPLDRFEGALAAGELVQRIENSLKVK 260
           DTEKYP IA+KYKIEALPTFILFKDG+P DRFEGAL A +L+QRIE+SLKVK
Sbjct: 125 DTEKYPSIANKYKIEALPTFILFKDGEPCDRFEGALTAKQLIQRIEDSLKVK 171

[Close]

BLAST of Cp4.1LG00g02370 vs. TAIR10
Match: AT1G43560.1 (AT1G43560.1 thioredoxin Y2)

HSP 1 Score: 145.6 bits (366), Expect = 4.3e-35
Identity = 96/177 (54.24%), Postives = 115/177 (64.97%), Query Frame = 1


Query: 102 MAASISTSPY-PLLTSERSNRFAVNDSSSSRLFSSSSLQLPVQLRCVRLGNCGISAQSRS 161
           MA S++T+   P  T E SN      +S SR  SS  ++LP Q+R  R G+   S  S +
Sbjct: 1   MAISLATAYISPCFTPESSN-----SASPSRTLSS--VRLPSQIR--RFGSVQ-SPSSST 60

Query: 162 RIFPVV--KAKNQTFSSFDDLLANSDKPVLVDFYAT---------------CDALSDTVQ 221
           R  P+    AK QTF+SFDDLL NSDKPVLVDFYAT                + L D + 
Sbjct: 61  RFAPLTVRAAKKQTFNSFDDLLQNSDKPVLVDFYATWCGPCQLMVPILNEVSETLKDIIA 120

Query: 222 VVKIDTEKYPVIADKYKIEALPTFILFKDGKPLDRFEGALAAGELVQRIENSLKVKQ 261
           VVKIDTEKYP +A+KY+IEALPTFILFKDGK  DRFEGAL A +LV+RIENSL+VKQ
Sbjct: 121 VVKIDTEKYPSLANKYQIEALPTFILFKDGKLWDRFEGALPANQLVERIENSLQVKQ 167

[Close]

BLAST of Cp4.1LG00g02370 vs. TAIR10
Match: AT3G15360.1 (AT3G15360.1 thioredoxin M-type 4)

HSP 1 Score: 51.6 bits (122), Expect = 8.4e-07
Identity = 53/178 (29.78%), Postives = 79/178 (44.38%), Query Frame = 1


Query: 100 LHMAASISTSPYPLLTSERSN------RFAVNDSSSSRLFSSSSLQLPVQLRCVRLGNCG 159
           L +AAS+S+S      S R         F    SS S +  S+SL    + R  R G   
Sbjct: 16  LPIAASVSSSSAAPSVSRRRISPARFLEFRGLKSSRSLVTQSASLGANRRTRIARGGRIA 75

Query: 160 ISAQSRSRIFPVVKAKNQTFSSFDDLLANSDKPVLVDFYAT----CDALSDTVQVV---- 219
             AQ  +     V+  N + S +   +  SD PVLV+F+A     C  +   V  +    
Sbjct: 76  CEAQDTTAA--AVEVPNLSDSEWQTKVLESDVPVLVEFWAPWCGPCRMIHPIVDQLAKDF 135

Query: 220 -------KIDTEKYPVIADKYKIEALPTFILFKDGKPLDRFEGALAAGELVQRIENSL 257
                  KI+T++ P  A++Y I ++PT I+FK G+  D   GA+    L + IE  L
Sbjct: 136 AGKFKFYKINTDESPNTANRYGIRSVPTVIIFKGGEKKDSIIGAVPRETLEKTIERFL 191

[Close]

BLAST of Cp4.1LG00g02370 vs. TAIR10
Match: AT4G04950.1 (AT4G04950.1 thioredoxin family protein)

HSP 1 Score: 50.8 bits (120), Expect = 1.4e-06
Identity = 28/79 (35.44%), Postives = 43/79 (54.43%), Query Frame = 1


Query: 178 DLLANSDKPVLVDFYAT-CDALSDTVQVV-------------KIDTEKYPVIADKYKIEA 237
           D L  S  PV++ F+A+ CDA     QV              +++ E++P I++ Y + A
Sbjct: 15  DNLRQSGAPVVLHFWASWCDASKQMDQVFSHLATDFPRAHFFRVEAEEHPEISEAYSVAA 74

Query: 238 LPTFILFKDGKPLDRFEGA 243
           +P F+ FKDGK +D  EGA
Sbjct: 75  VPYFVFFKDGKTVDTLEGA 93

[Close]

BLAST of Cp4.1LG00g02370 vs. TAIR10
Match: AT4G32580.1 (AT4G32580.1 Thioredoxin superfamily protein)

HSP 1 Score: 48.1 bits (113), Expect = 9.3e-06
Identity = 26/79 (32.91%), Postives = 43/79 (54.43%), Query Frame = 1


Query: 178 DLLANSDKPVLVDFYAT-CDALSDTVQVV-------------KIDTEKYPVIADKYKIEA 237
           D L +S  P+++ F+A+ CDA     QV              +++ E++P I++ Y +  
Sbjct: 15  DNLRHSGAPLVLHFWASWCDASKQMDQVFSHLATDFPRAHFFRVEAEEHPEISEAYSVAL 74

Query: 238 LPTFILFKDGKPLDRFEGA 243
           +P F+ FKDGK +D  EGA
Sbjct: 75  VPYFVFFKDGKTVDTLEGA 93

[Close]

BLAST of Cp4.1LG00g02370 vs. NCBI nr
Match: gi|659126232|ref|XP_008463079.1| (PREDICTED: thioredoxin Y1, chloroplastic [Cucumis melo])

HSP 1 Score: 228.0 bits (580), Expect = 1.9e-56
Identity = 130/174 (74.71%), Postives = 135/174 (77.59%), Query Frame = 1


Query: 102 MAASISTSPYPLLTSERSNRFAVNDSSSSRLFSSSSLQLPVQLRCVRLGNCGISAQSRSR 161
           MAAS STSPYPLLTS RSNR     SSSS L SSSSL LP+QLR  RLGN  IS  S SR
Sbjct: 1   MAASFSTSPYPLLTSHRSNRLPAYHSSSSALSSSSSLHLPLQLRRFRLGNTRISPPSPSR 60

Query: 162 IFPVVKAKNQTFSSFDDLLANSDKPVLVDFYAT----CD-----------ALSDTVQVVK 221
             P+VKAKNQTFSSFDDLLANSDKPVLVDFYAT    C            AL D VQVVK
Sbjct: 61  TLPLVKAKNQTFSSFDDLLANSDKPVLVDFYATWCGPCQFMVPILEKVSAALIDKVQVVK 120

Query: 222 IDTEKYPVIADKYKIEALPTFILFKDGKPLDRFEGALAAGELVQRIENSLKVKQ 261
           IDTEKYP IADKY+IEALPTFILFKDGKPLDRFEGALAA EL+QRIE+SLKVKQ
Sbjct: 121 IDTEKYPAIADKYRIEALPTFILFKDGKPLDRFEGALAARELIQRIEDSLKVKQ 174

[Close]

BLAST of Cp4.1LG00g02370 vs. NCBI nr
Match: gi|449441218|ref|XP_004138379.1| (PREDICTED: thioredoxin Y1, chloroplastic [Cucumis sativus])

HSP 1 Score: 218.4 bits (555), Expect = 1.5e-53
Identity = 126/174 (72.41%), Postives = 131/174 (75.29%), Query Frame = 1


Query: 102 MAASISTSPYPLLTSERSNRFAVNDSSSSRLFSSSSLQLPVQLRCVRLGNCGISAQSRSR 161
           MAAS STSPYP+LTS RSNR     SSSS L  SSSL LP+QLR   L N  IS  S S 
Sbjct: 1   MAASFSTSPYPILTSHRSNRLPAYHSSSSSLSFSSSLHLPLQLRRFPLANTRISPPSSSP 60

Query: 162 IFPVVKAKNQTFSSFDDLLANSDKPVLVDFYAT----CD-----------ALSDTVQVVK 221
            FPVVKAKNQTFSSFDDLLANSD PVLVDFYAT    C            AL D VQVVK
Sbjct: 61  SFPVVKAKNQTFSSFDDLLANSDTPVLVDFYATWCGPCQFMVPILEQVSAALIDKVQVVK 120

Query: 222 IDTEKYPVIADKYKIEALPTFILFKDGKPLDRFEGALAAGELVQRIENSLKVKQ 261
           IDTEKYP IADKY+IEALPTFILFKDGKPLDRFEGALAA EL+QRIE+SLKVKQ
Sbjct: 121 IDTEKYPAIADKYRIEALPTFILFKDGKPLDRFEGALAARELIQRIEDSLKVKQ 174

[Close]

BLAST of Cp4.1LG00g02370 vs. NCBI nr
Match: gi|595798572|ref|XP_007201408.1| (hypothetical protein PRUPE_ppa012274mg [Prunus persica])

HSP 1 Score: 198.0 bits (502), Expect = 2.1e-47
Identity = 110/177 (62.15%), Postives = 128/177 (72.32%), Query Frame = 1


Query: 102 MAASISTSPYPLLTSERSNRFAVNDSSS---SRLFSSSSLQLPVQLRCVRLGNCGISAQS 161
           MA S++ S      S+R+ R A   SSS   S+L SSSSLQ+PVQLRCVR+G  G+SA S
Sbjct: 1   MAVSVTASTISSFRSDRTTRIAATSSSSASCSKLSSSSSLQVPVQLRCVRIGRSGVSAPS 60

Query: 162 RSRIFPVVKAKNQTFSSFDDLLANSDKPVLVDFYAT----CD-----------ALSDTVQ 221
           R RI PVV AK QTFSSF+DLLA SDKP+LVDFYAT    C             L+D +Q
Sbjct: 61  RPRILPVVAAKKQTFSSFEDLLATSDKPILVDFYATWCGPCQFMAPILNEVSITLNDKIQ 120

Query: 222 VVKIDTEKYPVIADKYKIEALPTFILFKDGKPLDRFEGALAAGELVQRIENSLKVKQ 261
           VVKIDTEKYP IADKY I+ALPTFI+FKDG+P DRFEGAL A +LV+RIE +LKVKQ
Sbjct: 121 VVKIDTEKYPSIADKYNIQALPTFIIFKDGEPYDRFEGALTADQLVERIETTLKVKQ 177

[Close]

BLAST of Cp4.1LG00g02370 vs. NCBI nr
Match: gi|645264797|ref|XP_008237848.1| (PREDICTED: thioredoxin Y1, chloroplastic [Prunus mume])

HSP 1 Score: 195.3 bits (495), Expect = 1.3e-46
Identity = 109/177 (61.58%), Postives = 128/177 (72.32%), Query Frame = 1


Query: 102 MAASISTSPYPLLTSERSNRFAVNDSSS---SRLFSSSSLQLPVQLRCVRLGNCGISAQS 161
           MA S++ S     +S+R+ R A   SSS   S+L SSS LQ+PVQLRCVR+G  G+SA S
Sbjct: 1   MAVSVTASTISSFSSDRTTRIAATSSSSASCSKLSSSSFLQVPVQLRCVRIGRSGVSAPS 60

Query: 162 RSRIFPVVKAKNQTFSSFDDLLANSDKPVLVDFYAT----CD-----------ALSDTVQ 221
           R RI PVV AK QTFSSF+DLLA SDKPVLVDFYAT    C             L+D +Q
Sbjct: 61  RPRILPVVAAKKQTFSSFEDLLATSDKPVLVDFYATWCGPCQFMAPILNEVSITLNDKIQ 120

Query: 222 VVKIDTEKYPVIADKYKIEALPTFILFKDGKPLDRFEGALAAGELVQRIENSLKVKQ 261
           VVKIDTEKYP IADKY I+ALPTFI+FKDG+P DRFEGAL A +LV+RIE +L+VKQ
Sbjct: 121 VVKIDTEKYPSIADKYNIQALPTFIIFKDGEPYDRFEGALTADQLVERIETTLQVKQ 177

[Close]

BLAST of Cp4.1LG00g02370 vs. NCBI nr
Match: gi|225460644|ref|XP_002266350.1| (PREDICTED: thioredoxin Y1, chloroplastic [Vitis vinifera])

HSP 1 Score: 191.8 bits (486), Expect = 1.5e-45
Identity = 109/175 (62.29%), Postives = 127/175 (72.57%), Query Frame = 1


Query: 102 MAASISTSPYPLLTSERSNRFAVNDSS-SSRLFSSSSLQLPVQLRCVRLGNCGISAQSRS 161
           MA S++ S    L S+R    A + SS SS+LFSSS LQ P QLR +R+GN GIS+ SR 
Sbjct: 1   MATSLTFSTVRALNSQRPTPLAFSSSSPSSKLFSSSPLQFPRQLRPIRIGNNGISSPSRP 60

Query: 162 RIFPVVKAKNQTFSSFDDLLANSDKPVLVDFYAT----CD-----------ALSDTVQVV 221
           R  PVV+AK QTFSS D+LLANS+KPVLVDFYAT    C            +L D +QVV
Sbjct: 61  RTLPVVEAKKQTFSSLDELLANSEKPVLVDFYATWCGPCQFMVPILNEVGASLKDKIQVV 120

Query: 222 KIDTEKYPVIADKYKIEALPTFILFKDGKPLDRFEGALAAGELVQRIENSLKVKQ 261
           KIDTEKYP IADKY+IEALPTFI+FKDGKP DRFEGAL A +L+QRIE +LKVKQ
Sbjct: 121 KIDTEKYPSIADKYRIEALPTFIIFKDGKPYDRFEGALTADQLIQRIETTLKVKQ 175

The following BLAST results are available for this feature:

BLAST of Cp4.1LG00g02370 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TRXY1_ARATH	5.3e-35	54.07	Thioredoxin Y1, chloroplastic OS=Arabidopsis thaliana GN=At1g76760 PE=2 SV=1	[more]
TRXY2_ARATH	7.6e-34	54.24	Thioredoxin Y2, chloroplastic OS=Arabidopsis thaliana GN=At1g43560 PE=2 SV=1	[more]
TRXY_ORYSJ	4.1e-27	56.30	Thioredoxin Y, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0963400 PE=...	[more]
THIO1_SYNY3	1.1e-16	44.55	Thioredoxin-like protein slr0233 OS=Synechocystis sp. (strain PCC 6803 / Kazusa)...	[more]
TRXM3_ORYSJ	1.6e-07	31.73	Thioredoxin M3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os04g0430800 PE...	[more]

BLAST of Cp4.1LG00g02370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7X7_CUCSA	1.0e-53	72.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014850 PE=4 SV=1	[more]
M5VN05_PRUPE	1.4e-47	62.15	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012274mg PE=4 SV=1	[more]
D7SRD7_VITVI	1.0e-45	62.29	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0072g00400 PE=4 SV=...	[more]
W9S850_9ROSA	6.3e-43	61.11	Thioredoxin Y1 OS=Morus notabilis GN=L484_017852 PE=4 SV=1	[more]
A0A067GVL1_CITSI	2.9e-40	58.86	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030351mg PE=4 SV=1	[more]

BLAST of Cp4.1LG00g02370 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G76760.1	3.0e-36	54.07	thioredoxin Y1	[more]
AT1G43560.1	4.3e-35	54.24	thioredoxin Y2	[more]
AT3G15360.1	8.4e-07	29.78	thioredoxin M-type 4	[more]
AT4G04950.1	1.4e-06	35.44	thioredoxin family protein	[more]
AT4G32580.1	9.3e-06	32.91	Thioredoxin superfamily protein	[more]

BLAST of Cp4.1LG00g02370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126232\|ref\|XP_008463079.1\|	1.9e-56	74.71	PREDICTED: thioredoxin Y1, chloroplastic [Cucumis melo]	[more]
gi\|449441218\|ref\|XP_004138379.1\|	1.5e-53	72.41	PREDICTED: thioredoxin Y1, chloroplastic [Cucumis sativus]	[more]
gi\|595798572\|ref\|XP_007201408.1\|	2.1e-47	62.15	hypothetical protein PRUPE_ppa012274mg [Prunus persica]	[more]
gi\|645264797\|ref\|XP_008237848.1\|	1.3e-46	61.58	PREDICTED: thioredoxin Y1, chloroplastic [Prunus mume]	[more]
gi\|225460644\|ref\|XP_002266350.1\|	1.5e-45	62.29	PREDICTED: thioredoxin Y1, chloroplastic [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0045454	cell redox homeostasis
GO:0006662	glycerol ether metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0015035	protein disulfide oxidoreductase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR013766	Thioredoxin_domain
IPR012336	Thioredoxin-like_fold
IPR005746	Thioredoxin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006457	protein folding
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005623	cell
molecular_function	GO:0015035	protein disulfide oxidoreductase activity
molecular_function	GO:0003756	protein disulfide isomerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG00g02370.1	Cp4.1LG00g02370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005746	Thioredoxin	PANTHER	PTHR10438	THIOREDOXIN	coord: 97..257 score: 8.0
IPR012336	Thioredoxin-like fold	GENE3D	G3DSA:3.40.30.10		coord: 172..256 score: 1.1E-15coord: 68..97 score: 7.
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 65..97 score: 4.14E-6coord: 172..257 score: 4.04
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 172..253 score: 1.2
None	No IPR available	PANTHER	PTHR10438:SF280	THIOREDOXIN Y1, CHLOROPLASTIC-RELATED	coord: 97..257 score: 8.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG00g02370	CmaCh09G011740	Cucurbita maxima (Rimu)	cmacpeB025

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG00g02370	Cucurbita moschata (Rifu)	cmocpeB080