Cp4.1LG00g02360 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG00g02360
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	serine-rich protein-related
Location	Cp4.1LG00 : 7162440 .. 7162925 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTTCCTCGGCTCCAACTCTCCACAAGTTTCATCTCTGTCGTCGTTGGAGATCAAATTCGTCGGAATCTGCGGAAACTATCAGATTGATCGAAGGCCGGCATCTCCCGGCCGTTCGATTTCGGTTCAGAAGAATCGCGACGGAAATGCGAATGCGGTTGCGTCGTCGAATAAGAGGAAATGGTGTATGTGTTCTCCGTCTACTCATCCAGCCTCTTTCCGGTGTTCGCTCCACAACAAGAAGTCGAGGCACTCTGTTAATGCCCTGAATCGCAGCGAGTTCTCGAACGGATCGTTGGATTTTCGTAGATCGGCAATGACGAATTCGATTGCCAGAATCGGAGGCGTGGAAGGTGCTGATCTCGTGAAGAGAGCTTTATCGGCTTTGATTAGGCCTTCTTCGCATCAGTTGCGGCCGCGATCAGCGTTTCAACCTAGACCTAGCCGTCTATCAGTCATGTCAAAAGCAGAGCAGGAGTAG

mRNA sequence

ATGGCTTCCTTCCTCGGCTCCAACTCTCCACAAGTTTCATCTCTGTCGTCGTTGGAGATCAAATTCGTCGGAATCTGCGGAAACTATCAGATTGATCGAAGGCCGGCATCTCCCGGCCGTTCGATTTCGGTTCAGAAGAATCGCGACGGAAATGCGAATGCGGTTGCGTCGTCGAATAAGAGGAAATGGTGTATGTGTTCTCCGTCTACTCATCCAGCCTCTTTCCGGTGTTCGCTCCACAACAAGAAGTCGAGGCACTCTGTTAATGCCCTGAATCGCAGCGAGTTCTCGAACGGATCGTTGGATTTTCGTAGATCGGCAATGACGAATTCGATTGCCAGAATCGGAGGCGTGGAAGGTGCTGATCTCGTGAAGAGAGCTTTATCGGCTTTGATTAGGCCTTCTTCGCATCAGTTGCGGCCGCGATCAGCGTTTCAACCTAGACCTAGCCGTCTATCAGTCATGTCAAAAGCAGAGCAGGAGTAG

Coding sequence (CDS)

ATGGCTTCCTTCCTCGGCTCCAACTCTCCACAAGTTTCATCTCTGTCGTCGTTGGAGATCAAATTCGTCGGAATCTGCGGAAACTATCAGATTGATCGAAGGCCGGCATCTCCCGGCCGTTCGATTTCGGTTCAGAAGAATCGCGACGGAAATGCGAATGCGGTTGCGTCGTCGAATAAGAGGAAATGGTGTATGTGTTCTCCGTCTACTCATCCAGCCTCTTTCCGGTGTTCGCTCCACAACAAGAAGTCGAGGCACTCTGTTAATGCCCTGAATCGCAGCGAGTTCTCGAACGGATCGTTGGATTTTCGTAGATCGGCAATGACGAATTCGATTGCCAGAATCGGAGGCGTGGAAGGTGCTGATCTCGTGAAGAGAGCTTTATCGGCTTTGATTAGGCCTTCTTCGCATCAGTTGCGGCCGCGATCAGCGTTTCAACCTAGACCTAGCCGTCTATCAGTCATGTCAAAAGCAGAGCAGGAGTAG

Protein sequence

MASFLGSNSPQVSSLSSLEIKFVGICGNYQIDRRPASPGRSISVQKNRDGNANAVASSNKRKWCMCSPSTHPASFRCSLHNKKSRHSVNALNRSEFSNGSLDFRRSAMTNSIARIGGVEGADLVKRALSALIRPSSHQLRPRSAFQPRPSRLSVMSKAEQE

Homology

[Close]

BLAST of Cp4.1LG00g02360 vs. TrEMBL
Match: A0A0A0KWX3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G006290 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 5.8e-39
Identity = 94/134 (70.15%), Postives = 107/134 (79.85%), Query Frame = 1


Query: 29  YQIDRRPASPGR-SISVQKNRDGNANAVASSNKRKWCMCSPSTHPASFRCSLHNKKSRHS 88
           +Q D+R ASP R S+SVQKNRD NANAV S+ K+  CMCSP+ HP SFRCSLH K S HS
Sbjct: 55  FQTDQRSASPSRRSVSVQKNRDSNANAVPSNKKKVMCMCSPTKHPGSFRCSLH-KNSTHS 114

Query: 89  VNALNRSEFSNGSLDFRRSAMTNSIARIGGVEGADLVKRALSALIRPSSHQLRPRSAFQP 148
           ++  N S+F N SL+ RRSAMTNS+ RI  VEGADLVKRALSALIRPSSHQ R +SAFQ 
Sbjct: 115 IDISNGSQFRNVSLNIRRSAMTNSLVRIECVEGADLVKRALSALIRPSSHQQRRQSAFQR 174

Query: 149 RPSRLSVMSKAEQE 162
           RPS LSVMSKAE+E
Sbjct: 175 RPSHLSVMSKAEEE 187

[Close]

BLAST of Cp4.1LG00g02360 vs. TrEMBL
Match: Q8H6R2_PONTR (CTV.15 OS=Poncirus trifoliata GN=CTV.15 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 7.6e-31
Identity = 75/132 (56.82%), Postives = 100/132 (75.76%), Query Frame = 1


Query: 29  YQIDRRPASPGRSISVQKNRDGNANAVASSNKRKWCMCSPSTHPASFRCSLHNKKSRHSV 88
           + ID RP SPGRSIS  +    + NA + +  ++ C CSP+THP SFRC+LH + + +S 
Sbjct: 74  FSIDNRPISPGRSISYTRQISKSNNAASFNAPKRTCACSPTTHPGSFRCALHKRTNSYSS 133

Query: 89  N-ALNRSEFSNGSLDFRRSAMTNSIARIGGVEGADLVKRALSALIRPSSHQLRPRSAFQP 148
           +   + S +S+  L++RRSAMTNS+ RIGGVEG +LVKRAL+ALIRPSSHQ R R+AF+P
Sbjct: 134 HKTASSSHYSSSRLNYRRSAMTNSLVRIGGVEG-ELVKRALTALIRPSSHQQRRRAAFEP 193

Query: 149 RPSRLSVMSKAE 160
           RPSRLS+MSKA+
Sbjct: 194 RPSRLSIMSKAD 204

[Close]

BLAST of Cp4.1LG00g02360 vs. TrEMBL
Match: A0A0D2U702_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G057600 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.9e-30
Identity = 86/132 (65.15%), Postives = 98/132 (74.24%), Query Frame = 1


Query: 29  YQIDRRPASPGRSIS-VQKNRDGNANAVASSNKRKWCMCSPSTHPASFRCSLHNKKSRHS 88
           + +D RP SP RSI+ ++KN D   N      KR  CMCSP+THP SFRCSLH  K  ++
Sbjct: 77  FSLDNRPISPNRSIATIRKNTDAVQNLEKRQQKRT-CMCSPTTHPGSFRCSLH--KGFNN 136

Query: 89  VNALNRSEFSNGSLDFRRSAMTNSIARIGGVEGADLVKRALSALIRPSSHQLRPRSAFQP 148
            NA++    SN  L+ RRSAMTNS+ RIGGVEG DLVKRALSALIRPSSHQ R RSAFQP
Sbjct: 137 SNAVSSYAPSN-RLNARRSAMTNSLVRIGGVEG-DLVKRALSALIRPSSHQQRRRSAFQP 196

Query: 149 RPSRLSVMSKAE 160
           RPSRLSVMSKAE
Sbjct: 197 RPSRLSVMSKAE 203

[Close]

BLAST of Cp4.1LG00g02360 vs. TrEMBL
Match: A0A059AJL4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03089 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.9e-30
Identity = 90/163 (55.21%), Postives = 110/163 (67.48%), Query Frame = 1


Query: 6   GSNSPQV-----SSLSSLEIKFVGICGNYQIDRRPASPGRSISVQKN----RDGNANAVA 65
           G++ P+V     SS SS  ++F        IDR P SPGRSISV+        G   A  
Sbjct: 50  GASPPRVRMSGHSSQSSSSVRF-------SIDR-PTSPGRSISVRNQIGGGGGGGGRATT 109

Query: 66  SSNKRKWCMCSPSTHPASFRCSLHNKKSRHSVNALNRSEFSNGSLDFRRSAMTNSIARIG 125
             N++K CMCSP++HP SFRC+LH K SR +    + +  S+ SL+FRRSAMTNS+ RIG
Sbjct: 110 VPNQKKTCMCSPTSHPGSFRCALH-KNSRSNPQHHSGTYNSSRSLNFRRSAMTNSLVRIG 169

Query: 126 GVEGADLVKRALSALIRPSSHQLRPRSAFQPRPSRLSVMSKAE 160
           GVEG DLVKRAL+ALIRPSSHQLR R+ F+PRPSRLS MS AE
Sbjct: 170 GVEG-DLVKRALAALIRPSSHQLRRRADFKPRPSRLSTMSSAE 202

[Close]

BLAST of Cp4.1LG00g02360 vs. TrEMBL
Match: A0A067KPT0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06084 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.1e-29
Identity = 81/131 (61.83%), Postives = 100/131 (76.34%), Query Frame = 1


Query: 29  YQIDRRPASPGRSISVQKNRDGNANAVASSNKRKWCMCSPSTHPASFRCSLHNKKSRHS- 88
           + IDR P SP RS+S+++N   N NAV  SN+++ C CSP+THP SFRC+ H    R++ 
Sbjct: 83  FSIDR-PISPNRSLSMKRNAS-NGNAV--SNQKRTCACSPTTHPGSFRCAFHRALMRNNG 142

Query: 89  VNALNRSEFSNGSLDFRRSAMTNSIARIGGVEGADLVKRALSALIRPSSHQLRPRSAFQP 148
            +  + S  S+  L+FRRSAMTNS+ RIGGVEG +LVKRALSALIRPSSHQLR R+ FQP
Sbjct: 143 YSTQSASYHSSSRLNFRRSAMTNSLVRIGGVEG-ELVKRALSALIRPSSHQLRRRADFQP 202

Query: 149 RPSRLSVMSKA 159
           RPSRLSVMSKA
Sbjct: 203 RPSRLSVMSKA 208

[Close]

BLAST of Cp4.1LG00g02360 vs. TAIR10
Match: AT5G25280.1 (AT5G25280.1 serine-rich protein-related)

HSP 1 Score: 129.4 bits (324), Expect = 2.0e-30
Identity = 72/131 (54.96%), Postives = 93/131 (70.99%), Query Frame = 1


Query: 29  YQIDRRPASPGRSISVQKNRDGNANAVASSNKRKWCMCSPSTHPASFRCSLHNKKSRHSV 88
           Y ID R  SP RSI+V  N+  N + +  S +R  CMCSP+THP SFRCSLH  K+  + 
Sbjct: 93  YSIDNRSISPNRSIAVSSNKPSNHHKIPDSRRR--CMCSPTTHPGSFRCSLH--KNVANP 152

Query: 89  NALNRSEFSNGSLDFRRSAMTNSIARIGGVEGADLVKRALSALIRPSSHQLRPRSAFQPR 148
           +    + ++   L+ RRSAMTNS+ RIGGVEG + V+RAL+ LIRPSSHQL+ RSA++PR
Sbjct: 153 HGQGTASYTTNGLNMRRSAMTNSLVRIGGVEG-EWVRRALTTLIRPSSHQLKRRSAYEPR 212

Query: 149 PSRLSVMSKAE 160
            SRL+ MSKAE
Sbjct: 213 RSRLASMSKAE 218

[Close]

BLAST of Cp4.1LG00g02360 vs. TAIR10
Match: AT5G11090.1 (AT5G11090.1 serine-rich protein-related)

HSP 1 Score: 120.9 bits (302), Expect = 7.0e-28
Identity = 70/133 (52.63%), Postives = 93/133 (69.92%), Query Frame = 1


Query: 29  YQIDRRPASP-GRSISVQKNRDGNANAVASSNKRKWCMCSPSTHPASFRCSLHNKKSRHS 88
           Y +D R  SP  +SISV KN+  + N   S      CMCSP+THP SFRCSLH  K+  +
Sbjct: 91  YSLDSRSISPTNKSISVSKNQPPSHNHKISRR----CMCSPTTHPGSFRCSLH--KNVAN 150

Query: 89  VNALNRSEFSNGSLDFRRSAMTNSIARIGGVEGADLVKRALSALIRPSSHQLRPRSAFQP 148
            +    + ++   L+ RRSAMTNS+ RIGGVEG + V+RAL+ LIRPSSH L+ R+A+QP
Sbjct: 151 PHGQGTASYTTNGLNMRRSAMTNSLVRIGGVEG-EWVRRALTTLIRPSSHHLKRRAAYQP 210

Query: 149 RPSRLSVMSKAEQ 161
           RPSRLS+M+KA++
Sbjct: 211 RPSRLSIMAKADE 216

[Close]

BLAST of Cp4.1LG00g02360 vs. TAIR10
Match: AT5G20370.1 (AT5G20370.1 serine-rich protein-related)

HSP 1 Score: 61.2 bits (147), Expect = 6.6e-10
Identity = 46/104 (44.23%), Postives = 65/104 (62.50%), Query Frame = 1


Query: 60  KRKWCMCSPSTHPASFRCSLH----NKKSR----HSVNALNRSEFS---NGSLDFRRSAM 119
           KRK C+CSP+THP SFRCS H    ++KS+     +V   NR + +   N  L+ R+ A+
Sbjct: 68  KRK-CLCSPTTHPGSFRCSFHRRLEHEKSKTLASSTVKRNNRGDNTIRVNVGLNLRKLAL 127

Query: 120 TNSIARIGGVEGADLVKRALSA-LIRPSSHQLRPRSAFQPRPSR 152
            NS+A+IG VE A+  +R+L+A L +PSS     R  F+PR SR
Sbjct: 128 MNSLAKIGSVE-AERFRRSLAANLAKPSSLHSHRRPEFRPRLSR 169

[Close]

BLAST of Cp4.1LG00g02360 vs. NCBI nr
Match: gi|659108435|ref|XP_008454197.1| (PREDICTED: putative protein TPRXL [Cucumis melo])

HSP 1 Score: 179.1 bits (453), Expect = 6.2e-42
Identity = 100/133 (75.19%), Postives = 110/133 (82.71%), Query Frame = 1


Query: 29  YQIDRRPASPGRSISVQKNRDGNANAVASSNKRKWCMCSPSTHPASFRCSLHNKKSRHSV 88
           +QID+R ASP RSISVQKNRD NANAV S NKRK C+CSP+ HP SFRCSLH K S HSV
Sbjct: 67  FQIDQRSASPSRSISVQKNRDSNANAVPS-NKRKVCVCSPTKHPGSFRCSLH-KNSTHSV 126

Query: 89  NALNRSEFSNGSLDFRRSAMTNSIARIGGVEGADLVKRALSALIRPSSHQLRPRSAFQPR 148
           +  N S+  NGSL+ RRSAMTNS+ RIG VEGADLVKRALSALIRPSSHQ R  SAFQ R
Sbjct: 127 DVSNGSQLRNGSLNVRRSAMTNSLVRIGCVEGADLVKRALSALIRPSSHQQRRPSAFQRR 186

Query: 149 PSRLSVMSKAEQE 162
           PSRLS+MSKAE+E
Sbjct: 187 PSRLSLMSKAEEE 197

[Close]

BLAST of Cp4.1LG00g02360 vs. NCBI nr
Match: gi|449469250|ref|XP_004152334.1| (PREDICTED: uncharacterized protein LOC101207294 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 8.3e-39
Identity = 94/134 (70.15%), Postives = 107/134 (79.85%), Query Frame = 1


Query: 29  YQIDRRPASPGR-SISVQKNRDGNANAVASSNKRKWCMCSPSTHPASFRCSLHNKKSRHS 88
           +Q D+R ASP R S+SVQKNRD NANAV S+ K+  CMCSP+ HP SFRCSLH K S HS
Sbjct: 55  FQTDQRSASPSRRSVSVQKNRDSNANAVPSNKKKVMCMCSPTKHPGSFRCSLH-KNSTHS 114

Query: 89  VNALNRSEFSNGSLDFRRSAMTNSIARIGGVEGADLVKRALSALIRPSSHQLRPRSAFQP 148
           ++  N S+F N SL+ RRSAMTNS+ RI  VEGADLVKRALSALIRPSSHQ R +SAFQ 
Sbjct: 115 IDISNGSQFRNVSLNIRRSAMTNSLVRIECVEGADLVKRALSALIRPSSHQQRRQSAFQR 174

Query: 149 RPSRLSVMSKAEQE 162
           RPS LSVMSKAE+E
Sbjct: 175 RPSHLSVMSKAEEE 187

[Close]

BLAST of Cp4.1LG00g02360 vs. NCBI nr
Match: gi|24461857|gb|AAN62344.1|AF506028_11 (CTV.15 [Citrus trifoliata])

HSP 1 Score: 141.7 bits (356), Expect = 1.1e-30
Identity = 75/132 (56.82%), Postives = 100/132 (75.76%), Query Frame = 1


Query: 29  YQIDRRPASPGRSISVQKNRDGNANAVASSNKRKWCMCSPSTHPASFRCSLHNKKSRHSV 88
           + ID RP SPGRSIS  +    + NA + +  ++ C CSP+THP SFRC+LH + + +S 
Sbjct: 74  FSIDNRPISPGRSISYTRQISKSNNAASFNAPKRTCACSPTTHPGSFRCALHKRTNSYSS 133

Query: 89  N-ALNRSEFSNGSLDFRRSAMTNSIARIGGVEGADLVKRALSALIRPSSHQLRPRSAFQP 148
           +   + S +S+  L++RRSAMTNS+ RIGGVEG +LVKRAL+ALIRPSSHQ R R+AF+P
Sbjct: 134 HKTASSSHYSSSRLNYRRSAMTNSLVRIGGVEG-ELVKRALTALIRPSSHQQRRRAAFEP 193

Query: 149 RPSRLSVMSKAE 160
           RPSRLS+MSKA+
Sbjct: 194 RPSRLSIMSKAD 204

[Close]

BLAST of Cp4.1LG00g02360 vs. NCBI nr
Match: gi|823237870|ref|XP_012451582.1| (PREDICTED: uncharacterized protein LOC105773923 [Gossypium raimondii])

HSP 1 Score: 139.8 bits (351), Expect = 4.1e-30
Identity = 86/132 (65.15%), Postives = 98/132 (74.24%), Query Frame = 1


Query: 29  YQIDRRPASPGRSIS-VQKNRDGNANAVASSNKRKWCMCSPSTHPASFRCSLHNKKSRHS 88
           + +D RP SP RSI+ ++KN D   N      KR  CMCSP+THP SFRCSLH  K  ++
Sbjct: 77  FSLDNRPISPNRSIATIRKNTDAVQNLEKRQQKRT-CMCSPTTHPGSFRCSLH--KGFNN 136

Query: 89  VNALNRSEFSNGSLDFRRSAMTNSIARIGGVEGADLVKRALSALIRPSSHQLRPRSAFQP 148
            NA++    SN  L+ RRSAMTNS+ RIGGVEG DLVKRALSALIRPSSHQ R RSAFQP
Sbjct: 137 SNAVSSYAPSN-RLNARRSAMTNSLVRIGGVEG-DLVKRALSALIRPSSHQQRRRSAFQP 196

Query: 149 RPSRLSVMSKAE 160
           RPSRLSVMSKAE
Sbjct: 197 RPSRLSVMSKAE 203

[Close]

BLAST of Cp4.1LG00g02360 vs. NCBI nr
Match: gi|702484467|ref|XP_010033986.1| (PREDICTED: uncharacterized protein LOC104423200 [Eucalyptus grandis])

HSP 1 Score: 139.0 bits (349), Expect = 7.1e-30
Identity = 90/163 (55.21%), Postives = 110/163 (67.48%), Query Frame = 1


Query: 6   GSNSPQV-----SSLSSLEIKFVGICGNYQIDRRPASPGRSISVQKN----RDGNANAVA 65
           G++ P+V     SS SS  ++F        IDR P SPGRSISV+        G   A  
Sbjct: 50  GASPPRVRMSGHSSQSSSSVRF-------SIDR-PTSPGRSISVRNQIGGGGGGGGRATT 109

Query: 66  SSNKRKWCMCSPSTHPASFRCSLHNKKSRHSVNALNRSEFSNGSLDFRRSAMTNSIARIG 125
             N++K CMCSP++HP SFRC+LH K SR +    + +  S+ SL+FRRSAMTNS+ RIG
Sbjct: 110 VPNQKKTCMCSPTSHPGSFRCALH-KNSRSNPQHHSGTYNSSRSLNFRRSAMTNSLVRIG 169

Query: 126 GVEGADLVKRALSALIRPSSHQLRPRSAFQPRPSRLSVMSKAE 160
           GVEG DLVKRAL+ALIRPSSHQLR R+ F+PRPSRLS MS AE
Sbjct: 170 GVEG-DLVKRALAALIRPSSHQLRRRADFKPRPSRLSTMSSAE 202

The following BLAST results are available for this feature:

BLAST of Cp4.1LG00g02360 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG00g02360 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWX3_CUCSA	5.8e-39	70.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G006290 PE=4 SV=1	[more]
Q8H6R2_PONTR	7.6e-31	56.82	CTV.15 OS=Poncirus trifoliata GN=CTV.15 PE=4 SV=1	[more]
A0A0D2U702_GOSRA	2.9e-30	65.15	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G057600 PE=4 SV=1	[more]
A0A059AJL4_EUCGR	4.9e-30	55.21	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03089 PE=4 SV=1	[more]
A0A067KPT0_JATCU	1.1e-29	61.83	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06084 PE=4 SV=1	[more]

BLAST of Cp4.1LG00g02360 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G25280.1	2.0e-30	54.96	serine-rich protein-related	[more]
AT5G11090.1	7.0e-28	52.63	serine-rich protein-related	[more]
AT5G20370.1	6.6e-10	44.23	serine-rich protein-related	[more]

BLAST of Cp4.1LG00g02360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108435\|ref\|XP_008454197.1\|	6.2e-42	75.19	PREDICTED: putative protein TPRXL [Cucumis melo]	[more]
gi\|449469250\|ref\|XP_004152334.1\|	8.3e-39	70.15	PREDICTED: uncharacterized protein LOC101207294 [Cucumis sativus]	[more]
gi\|24461857\|gb\|AAN62344.1\|AF506028_11	1.1e-30	56.82	CTV.15 [Citrus trifoliata]	[more]
gi\|823237870\|ref\|XP_012451582.1\|	4.1e-30	65.15	PREDICTED: uncharacterized protein LOC105773923 [Gossypium raimondii]	[more]
gi\|702484467\|ref\|XP_010033986.1\|	7.1e-30	55.21	PREDICTED: uncharacterized protein LOC104423200 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG00g02360.1	Cp4.1LG00g02360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33132	FAMILY NOT NAMED	coord: 33..161 score: 4.8
None	No IPR available	PANTHER	PTHR33132:SF12	SUBFAMILY NOT NAMED	coord: 33..161 score: 4.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG00g02360	CmaCh09G011760	Cucurbita maxima (Rimu)	cmacpeB025

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG00g02360	Cucurbita moschata (Rifu)	cmocpeB080