Cp4.1LG00g02320 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG00g02320
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Homeobox associated leucine zipper protein
Location	Cp4.1LG00 : 6955629 .. 6957349 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGTGGGTGGCTGTGCAGTGCGAGAATTCGACATGAATCGGTTGCCGGAGGTGGGAGACGGCGAGGAGGAGTGGGCGGAGGNTATATATATATATATATTTTTTGTGTATTTGATTGGGAATGATTAAATTTTGATTTGCATGTTGATTAAATGGAAAGTGGGTGGCTGTGCAGTGCGAGAATTCGACATGAATCGGTTGCCGGAGGTGGGAGACGGCGAGGAGGAGTGGGCGGAGGAAGAAGAAGAAAGCTACATTAATGACTGTAAGCCAAGGAAAAAGCTTCGTCTATCAAAAGATCAGTCTCGGCTTCTTGAAGAAAGCTTTAGGCTCAATCATACATTAAACCCAGTAAGCAAAATCATCTCAAAATTAATGATCTTCGAATTTCTTAATCATGTATTTTATAAATAAAATTGATTATTTTTGTTTTTTATTTTTGTTTTAATTTTACAGAAGCAGAAGGAAGCTTTGGCTATGGAGTTGAAGCTGAAGCCAAGGCAAGTTGAAGTCTGGTTTCAGAATCGTAGGGCCAGGTTTGTATTTTTATACTCTCCTATATTCATTTCTTAGCTTAACAAAATGGTTATTTATTTATTTTTATTTTTATTATCTAAGTTTCCTTTTAAAAATAATCGATCTTCGGAAGCTTAAAGTGTTTTACGAAGTTAAATAATTTGTATTAGAGGTATTGAATTGTTAATCTGGATTAAGGAAATTTGTGTTCGGGTGTAGAGATATTTAATCTCGGTTTCCAAAGTTTGTGTTCGACGTGTAAAGTTTTTAACGTCGAGGTCTGAGTTTGAAGTTCGTGTTTATATGAATATATATATTTTTTTTATTATGTTTTCAAATGTTAATGTTTAATTTTTATTTTTCACCTATTTTCTTAGAATTAATTTTCTTTAGAATTATCTTAATAGAATGTTTTTAATTATTTTTTAAAATGTCTATGGAAATATCCATAATTATAAAAATAAACATGAAACGAGGAATTTTAGCTACTTTAACCCGATCTAAGTTAGGGTTAAACACGTTTTATGTTTGTTAGAGTTTCGTGAATCAAACATCTCTTAAATTCAATTTAAATCTCAAAGCTCCTACCTTTAATATGGATCTTTAGAGACACTCATTATTTGATTATATATGTGAAAACCTAACTAAATTTTAGATATTTGGATATATTTTTATTTCTGGTGAATAATGGAAGTATTAATCTTTTAAAATAATTATGTTATACACCGAAATTAACAACTTTTAAATGTATACTAAATATATATATTTGTTGACTTAATAAGAAAGGAAAATTAATTACCTAATGTGCATGGGCCTTAATCAATGCATTTGCTGGCCTAAATGTTTGATAGTTATCATGTTAATTGAATTGTATTTGAAAAGTAATTAATATTGTAGGAGCAAGCTGAAGCAAACTGAGAGGGAATGTGAGTATTTGAAGAGATGGTTTGGATCATTGACGGAGCAAAACCGCCGTCTCCGGCAGGAGCTGGAGGAGCTGAGAGCCATGAAGGTTGCTCCGACTGCGGTCGTCTCAGCTCACGGTCGACAGCCGCCCCTCCCAATTTCTGCAATAACCATGTGTCCCCGATGTGAGCGCATGAGTGCATCCACTATAACATATAGTAAGGGTGCGAGCAGCGCCAGCACAATGCCACCGGAAGCATTTCTGTCCGCCCTCAAACTGCGGCAGCCGTCGTGA

mRNA sequence

ATGGAAATGGGTGGCTGTGCAGTGCGAGAATTCGACATGAATCGGTTGCCGGAGGTGGGAGACGGCGAGGAGGAGTGGGCGGAGGAAGAAGAAGAAAGCTACATTAATGACTGTAAGCCAAGGAAAAAGCTTCGTCTATCAAAAGATCAGTCTCGGCTTCTTGAAGAAAGCTTTAGGCTCAATCATACATTAAACCCAAAGCAGAAGGAAGCTTTGGCTATGGAGTTGAAGCTGAAGCCAAGGCAAGTTGAAGTCTGGTTTCAGAATCGTAGGGCCAGGAGCAAGCTGAAGCAAACTGAGAGGGAATGTGAGTATTTGAAGAGATGGTTTGGATCATTGACGGAGCAAAACCGCCGTCTCCGGCAGGAGCTGGAGGAGCTGAGAGCCATGAAGGTTGCTCCGACTGCGGTCGTCTCAGCTCACGGTCGACAGCCGCCCCTCCCAATTTCTGCAATAACCATGTGTCCCCGATGTGAGCGCATGAGTGCATCCACTATAACATATAGTAAGGGTGCGAGCAGCGCCAGCACAATGCCACCGGAAGCATTTCTGTCCGCCCTCAAACTGCGGCAGCCGTCGTGA

Coding sequence (CDS)

ATGGAAATGGGTGGCTGTGCAGTGCGAGAATTCGACATGAATCGGTTGCCGGAGGTGGGAGACGGCGAGGAGGAGTGGGCGGAGGAAGAAGAAGAAAGCTACATTAATGACTGTAAGCCAAGGAAAAAGCTTCGTCTATCAAAAGATCAGTCTCGGCTTCTTGAAGAAAGCTTTAGGCTCAATCATACATTAAACCCAAAGCAGAAGGAAGCTTTGGCTATGGAGTTGAAGCTGAAGCCAAGGCAAGTTGAAGTCTGGTTTCAGAATCGTAGGGCCAGGAGCAAGCTGAAGCAAACTGAGAGGGAATGTGAGTATTTGAAGAGATGGTTTGGATCATTGACGGAGCAAAACCGCCGTCTCCGGCAGGAGCTGGAGGAGCTGAGAGCCATGAAGGTTGCTCCGACTGCGGTCGTCTCAGCTCACGGTCGACAGCCGCCCCTCCCAATTTCTGCAATAACCATGTGTCCCCGATGTGAGCGCATGAGTGCATCCACTATAACATATAGTAAGGGTGCGAGCAGCGCCAGCACAATGCCACCGGAAGCATTTCTGTCCGCCCTCAAACTGCGGCAGCCGTCGTGA

Protein sequence

MEMGGCAVREFDMNRLPEVGDGEEEWAEEEEESYINDCKPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCERMSASTITYSKGASSASTMPPEAFLSALKLRQPS

Homology

[Close]

BLAST of Cp4.1LG00g02320 vs. Swiss-Prot
Match: HOX3_ORYSJ (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.7e-52
Identity = 120/187 (64.17%), Postives = 143/187 (76.47%), Query Frame = 1


Query: 4   GGCAVREFDMNRLPEVGDGEEEWA-----EEEEESYINDCKPRKKLRLSKDQSRLLEESF 63
           GGC +R+ D+N+ P  G  EEE+      E+EEE  +      KKLRLSK+QSRLLEESF
Sbjct: 36  GGCNMRDLDINQ-PASGGEEEEFPMGSVEEDEEERGVGGPHRPKKLRLSKEQSRLLEESF 95

Query: 64  RLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNR 123
           RLNHTL PKQKEALA++LKL+PRQVEVWFQNRRAR+KLKQTE ECEYLKR FGSLTE+NR
Sbjct: 96  RLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENR 155

Query: 124 RLRQELEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCERMSAST--ITYSKGASSAS 183
           RL++E+EELRAM+VAP  V+S H RQ PLP SA+TMCPRCER++A+T         SSA+
Sbjct: 156 RLQREVEELRAMRVAPPTVLSPHTRQ-PLPASALTMCPRCERITAATGPPAVRPPPSSAA 215

[Close]

BLAST of Cp4.1LG00g02320 vs. Swiss-Prot
Match: HOX3_ORYSI (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.7e-52
Identity = 120/187 (64.17%), Postives = 143/187 (76.47%), Query Frame = 1


Query: 4   GGCAVREFDMNRLPEVGDGEEEWA-----EEEEESYINDCKPRKKLRLSKDQSRLLEESF 63
           GGC +R+ D+N+ P  G  EEE+      E+EEE  +      KKLRLSK+QSRLLEESF
Sbjct: 36  GGCNMRDLDINQ-PASGGEEEEFPMGSVEEDEEERGVGGPHRPKKLRLSKEQSRLLEESF 95

Query: 64  RLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNR 123
           RLNHTL PKQKEALA++LKL+PRQVEVWFQNRRAR+KLKQTE ECEYLKR FGSLTE+NR
Sbjct: 96  RLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENR 155

Query: 124 RLRQELEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCERMSAST--ITYSKGASSAS 183
           RL++E+EELRAM+VAP  V+S H RQ PLP SA+TMCPRCER++A+T         SSA+
Sbjct: 156 RLQREVEELRAMRVAPPTVLSPHTRQ-PLPASALTMCPRCERITAATGPPAVRPPPSSAA 215

[Close]

BLAST of Cp4.1LG00g02320 vs. Swiss-Prot
Match: ATB17_ARATH (Homeobox-leucine zipper protein ATHB-17 OS=Arabidopsis thaliana GN=ATHB-17 PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 6.4e-46
Identity = 107/180 (59.44%), Postives = 126/180 (70.00%), Query Frame = 1


Query: 4   GGCAVREFDMNRLPEVGDGEEEWAEEEEESYINDCKPRKKLRLSKDQSRLLEESFRLNHT 63
           GG      DMNRLP   DG++E    ++ S      PRKKLRL+++QSRLLE+SFR NHT
Sbjct: 105 GGRDQLRLDMNRLPSSEDGDDEEFSHDDGS----APPRKKLRLTREQSRLLEDSFRQNHT 164

Query: 64  LNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNRRLRQE 123
           LNPKQKE LA  L L+PRQ+EVWFQNRRARSKLKQTE ECEYLKRWFGSLTE+N RL +E
Sbjct: 165 LNPKQKEVLAKHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEENHRLHRE 224

Query: 124 LEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCERM--SASTITYSKGASSASTMPPE 182
           +EELRAMKV PT V SA         S++TMCPRCER+  +AS         +  T PP+
Sbjct: 225 VEELRAMKVGPTTVNSA---------SSLTMCPRCERVTPAASPSRAVVPVPAKKTFPPQ 271

[Close]

BLAST of Cp4.1LG00g02320 vs. Swiss-Prot
Match: ATHBX_ARATH (Homeobox-leucine zipper protein ATHB-X OS=Arabidopsis thaliana GN=ATHB-X PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 9.3e-37
Identity = 91/160 (56.88%), Postives = 111/160 (69.38%), Query Frame = 1


Query: 8   VREFDMNRLPEVGDGEEEWA-----EEEEESYINDCKPRKKLRLSKDQSRLLEESFRLNH 67
           +R+FD+N+ P+  + + EW         E+   +  + RKKLRL+K+QS LLEESF  NH
Sbjct: 31  MRDFDINQTPKTEE-DREWMIGATPHVNEDDSNSGGRRRKKLRLTKEQSHLLEESFIQNH 90

Query: 68  TLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNRRLRQ 127
           TL PKQK+ LA  LKL  RQVEVWFQNRRARSKLK TE ECEYLKRWFGSL EQNRRL+ 
Sbjct: 91  TLTPKQKKDLATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQNRRLQI 150

Query: 128 ELEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCERMS 163
           E+EELRA+K + T              SA+TMCPRCER++
Sbjct: 151 EVEELRALKPSST--------------SALTMCPRCERVT 175

[Close]

BLAST of Cp4.1LG00g02320 vs. Swiss-Prot
Match: HOX1_ORYSJ (Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. japonica GN=HOX1 PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 9.7e-34
Identity = 80/141 (56.74%), Postives = 106/141 (75.18%), Query Frame = 1


Query: 41  RKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTE 100
           RKKLRLSKDQ+ +LE++F+ ++TLNPKQK ALA +L LKPRQVEVWFQNRRAR+KLKQTE
Sbjct: 156 RKKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTE 215

Query: 101 RECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSAH--GRQPPLPISAITMCPRC 160
            +CE LKR   +LT++NRRL +EL+ELRA+K+A  A    H  G + P P + +TMCP C
Sbjct: 216 VDCELLKRCCETLTDENRRLHRELQELRALKLATAAAAPHHLYGARVP-PPTTLTMCPSC 275

Query: 161 ERMSASTITYSKGASSASTMP 180
           ER++++  T    + +A   P
Sbjct: 276 ERVASAATTTRNNSGAAPARP 295

[Close]

BLAST of Cp4.1LG00g02320 vs. TrEMBL
Match: A0A0A0KPM6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G576600 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 9.0e-63
Identity = 142/199 (71.36%), Postives = 161/199 (80.90%), Query Frame = 1


Query: 6   CAVREFDMNRLPEVGDGEEEWA------EEEEESYIND---CKPRKKLRLSKDQSRLLEE 65
           C VRE DMNR+P  G+ EE+WA      E EEES IN+    +PRKKLRLSKDQSRLLEE
Sbjct: 10  CVVRELDMNRVPAEGEAEEDWARGPSVEEGEEESSINNNGGTQPRKKLRLSKDQSRLLEE 69

Query: 66  SFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQ 125
           SFRLNHTLNPKQKE LAMELKLKPRQVEVWFQNRRARSKLKQTE ECEY+KR FGSLTEQ
Sbjct: 70  SFRLNHTLNPKQKEGLAMELKLKPRQVEVWFQNRRARSKLKQTELECEYMKRCFGSLTEQ 129

Query: 126 NRRLRQELEELRAMKVAPTAVVSAHGRQPPLPI-SAITMCPRCERMSASTITYS-KGASS 185
           NRRL+ ELEELRA+KVAP AVVS H R PPL + S IT+CPRCER+ +S  T + + A++
Sbjct: 130 NRRLQWELEELRAIKVAPPAVVSRHNRHPPLLMRSTITICPRCERIISSKNTVADQTATT 189

Query: 186 ASTMPPEAFLSALKLRQPS 194
           A+ MP +  LSAL+LRQPS
Sbjct: 190 ATAMPSKVVLSALQLRQPS 208

[Close]

BLAST of Cp4.1LG00g02320 vs. TrEMBL
Match: A0A0B0MRC6_GOSAR (Homeobox-leucine zipper HOX3 OS=Gossypium arboreum GN=F383_25892 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.6e-56
Identity = 121/180 (67.22%), Postives = 144/180 (80.00%), Query Frame = 1


Query: 2   EMGGCAVREFDMNRLPEVGDGEEEWA----EEEEESYINDCKPRKKLRLSKDQSRLLEES 61
           + GGC VR+ D+N++P     E+EW     E+EEES  N   PRKKLRL+K+QSRLLEES
Sbjct: 31  DQGGCTVRDLDINQVP----AEDEWITASMEDEEESCNNGAPPRKKLRLTKEQSRLLEES 90

Query: 62  FRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQN 121
           FRLNHTLNPKQKEALA++LKL+PRQVEVWFQNRRARSKLKQTE ECEYLKRWFGSLTEQN
Sbjct: 91  FRLNHTLNPKQKEALALQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQN 150

Query: 122 RRLRQELEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCERMSASTITYSKGASSAST 178
           RRL++E+EELRAMKVAP  V+S H  + PLP S +TMCPRCER++ +T    +  S+  T
Sbjct: 151 RRLQREVEELRAMKVAPPTVISPHSCE-PLPASTLTMCPRCERVTTTTTAAIEKGSAKMT 205

[Close]

BLAST of Cp4.1LG00g02320 vs. TrEMBL
Match: A0A0D2MCI0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G178800 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 3.7e-56
Identity = 125/192 (65.10%), Postives = 151/192 (78.65%), Query Frame = 1


Query: 2   EMGGCAVREFDMNRLPEVGDGEEEWA----EEEEESYINDCKPRKKLRLSKDQSRLLEES 61
           + GGC VR+ D+N++P     E+EW     E+EEES  N   PRKKLRL+K+QSRLLEES
Sbjct: 54  DQGGCTVRDLDINQVP----AEDEWITASMEDEEESCNNGAPPRKKLRLTKEQSRLLEES 113

Query: 62  FRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQN 121
           FRLNHTLNPKQK ALA++LKL+PRQVEVWFQNRRARSKLKQTE ECEYLKRWFGSLTEQN
Sbjct: 114 FRLNHTLNPKQKGALALQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQN 173

Query: 122 RRLRQELEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCERM-SASTITYSKGAS--S 181
           RRL++E+EELRAMKVAP  V+S H  + PLP S +TMCPRCER+ + +T    KG++  +
Sbjct: 174 RRLQREVEELRAMKVAPPTVISPHSCE-PLPASTLTMCPRCERVTTTTTAAIEKGSAKMT 233

Query: 182 ASTMPPEAFLSA 187
           A+T P    LS+
Sbjct: 234 AATNPTATTLSS 240

[Close]

BLAST of Cp4.1LG00g02320 vs. TrEMBL
Match: A0A061EF99_THECC (Homeobox-leucine zipper protein HOX3 OS=Theobroma cacao GN=TCM_010868 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 6.3e-56
Identity = 123/200 (61.50%), Postives = 152/200 (76.00%), Query Frame = 1


Query: 2   EMGGCAVREFDMNRLPEVGDGEEEW---AEEEEESYINDCKPRKKLRLSKDQSRLLEESF 61
           + GGC VR+ D+N++P  G  E+EW   + E+EE   N   PRKKLRL+K+QSRLLEESF
Sbjct: 31  DQGGCTVRDLDINQVPS-GGAEDEWITASMEDEEESCNGAPPRKKLRLTKEQSRLLEESF 90

Query: 62  RLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNR 121
           R NHTLNPKQKEALAM+LKL+PRQVEVWFQNRRARSKLKQTE ECEYLKRWFGSLTEQNR
Sbjct: 91  RQNHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNR 150

Query: 122 RLRQELEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCERMSASTI-----TYSKGAS 181
           RL++E+EELRAMKV P  V+S H  + PLP S +TMCPRCER++ + +       +   +
Sbjct: 151 RLQREVEELRAMKVGPPTVISPHSCE-PLPASTLTMCPRCERVTTTALDKGPTKMTAATA 210

Query: 182 SASTMPPEAFLSALKLRQPS 194
           +A+T+  +   SAL+ R  S
Sbjct: 211 TATTLSSKVGTSALQSRPSS 228

[Close]

BLAST of Cp4.1LG00g02320 vs. TrEMBL
Match: B9SJ50_RICCO (Homeobox protein, putative OS=Ricinus communis GN=RCOM_0843040 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 6.9e-55
Identity = 123/180 (68.33%), Postives = 144/180 (80.00%), Query Frame = 1


Query: 5   GCAVREFDMNRLPEVGDGEEEWA----EEEEESYINDCKPRKKLRLSKDQSRLLEESFRL 64
           G  V++ D+N+LP  G  EEEW     E+EEES IN   PRKKLRLSK+QSRLLEESFR 
Sbjct: 30  GEGVKDLDINQLP-AGVAEEEWITAGIEDEEESNINGGPPRKKLRLSKEQSRLLEESFRQ 89

Query: 65  NHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNRRL 124
           +HTLNP+QKEALAM+LKL+PRQVEVWFQNRRARSKLKQTE ECEYLKRWFGSLTEQNRRL
Sbjct: 90  HHTLNPRQKEALAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRL 149

Query: 125 RQELEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCERMSASTIT---YSKGASSAST 178
           ++E+EELRAMKV P  V+S H  + PLP S +TMCPRCER++ ST T   + KG +  +T
Sbjct: 150 QREVEELRAMKVGPPTVLSPHSCE-PLPASTLTMCPRCERVTTSTNTAAAFDKGPTRTAT 207

[Close]

BLAST of Cp4.1LG00g02320 vs. TAIR10
Match: AT2G01430.1 (AT2G01430.1 homeobox-leucine zipper protein 17)

HSP 1 Score: 185.3 bits (469), Expect = 3.6e-47
Identity = 107/180 (59.44%), Postives = 126/180 (70.00%), Query Frame = 1


Query: 4   GGCAVREFDMNRLPEVGDGEEEWAEEEEESYINDCKPRKKLRLSKDQSRLLEESFRLNHT 63
           GG      DMNRLP   DG++E    ++ S      PRKKLRL+++QSRLLE+SFR NHT
Sbjct: 105 GGRDQLRLDMNRLPSSEDGDDEEFSHDDGS----APPRKKLRLTREQSRLLEDSFRQNHT 164

Query: 64  LNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNRRLRQE 123
           LNPKQKE LA  L L+PRQ+EVWFQNRRARSKLKQTE ECEYLKRWFGSLTE+N RL +E
Sbjct: 165 LNPKQKEVLAKHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEENHRLHRE 224

Query: 124 LEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCERM--SASTITYSKGASSASTMPPE 182
           +EELRAMKV PT V SA         S++TMCPRCER+  +AS         +  T PP+
Sbjct: 225 VEELRAMKVGPTTVNSA---------SSLTMCPRCERVTPAASPSRAVVPVPAKKTFPPQ 271

[Close]

BLAST of Cp4.1LG00g02320 vs. TAIR10
Match: AT1G70920.1 (AT1G70920.1 homeobox-leucine zipper protein 18)

HSP 1 Score: 154.8 bits (390), Expect = 5.3e-38
Identity = 91/160 (56.88%), Postives = 111/160 (69.38%), Query Frame = 1


Query: 8   VREFDMNRLPEVGDGEEEWA-----EEEEESYINDCKPRKKLRLSKDQSRLLEESFRLNH 67
           +R+FD+N+ P+  + + EW         E+   +  + RKKLRL+K+QS LLEESF  NH
Sbjct: 31  MRDFDINQTPKTEE-DREWMIGATPHVNEDDSNSGGRRRKKLRLTKEQSHLLEESFIQNH 90

Query: 68  TLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNRRLRQ 127
           TL PKQK+ LA  LKL  RQVEVWFQNRRARSKLK TE ECEYLKRWFGSL EQNRRL+ 
Sbjct: 91  TLTPKQKKDLATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQNRRLQI 150

Query: 128 ELEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCERMS 163
           E+EELRA+K + T              SA+TMCPRCER++
Sbjct: 151 EVEELRALKPSST--------------SALTMCPRCERVT 175

[Close]

BLAST of Cp4.1LG00g02320 vs. TAIR10
Match: AT2G44910.1 (AT2G44910.1 homeobox-leucine zipper protein 4)

HSP 1 Score: 141.4 bits (355), Expect = 6.0e-34
Identity = 81/148 (54.73%), Postives = 107/148 (72.30%), Query Frame = 1


Query: 30  EEESYINDCKPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQN 89
           ++E   N    RKKLRLSKDQ+ +LEE+F+ + TLNPKQK ALA +L L+ RQVEVWFQN
Sbjct: 151 DDEDGGNGDGSRKKLRLSKDQALVLEETFKEHSTLNPKQKLALAKQLNLRARQVEVWFQN 210

Query: 90  RRARSKLKQTERECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSAHGRQPPLPI 149
           RRAR+KLKQTE +CEYLKR   +LTE+NRRL++E+ ELRA+K++P      H      P 
Sbjct: 211 RRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVSELRALKLSP------HLYMHMTPP 270

Query: 150 SAITMCPRCERMSASTITYSKGASSAST 178
           + +TMCP CER+S+S  T +   S+ +T
Sbjct: 271 TTLTMCPSCERVSSSAATVTAAPSTTTT 292

[Close]

BLAST of Cp4.1LG00g02320 vs. TAIR10
Match: AT3G60390.1 (AT3G60390.1 homeobox-leucine zipper protein 3)

HSP 1 Score: 141.0 bits (354), Expect = 7.9e-34
Identity = 90/193 (46.63%), Postives = 130/193 (67.36%), Query Frame = 1


Query: 3   MGGCAVREFDMNRLP-EVGDGEEEWAEEEEESYINDCKPRKKLRLSKDQSRLLEESFRLN 62
           +GG  V + ++ R    +G G    +++E+ S   D   RKKLRLSK+Q+ +LEE+F+ +
Sbjct: 126 VGGGRVEDNEIERASCSLGGG----SDDEDGSGNGDDSSRKKLRLSKEQALVLEETFKEH 185

Query: 63  HTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNRRLR 122
            TLNPKQK ALA +L L+ RQVEVWFQNRRAR+KLKQTE +CEYLKR   +LT++NRRL+
Sbjct: 186 STLNPKQKMALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTDENRRLQ 245

Query: 123 QELEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCERMSASTITYSKG---ASSASTM 182
           +E+ ELRA+K++P      H      P + +TMCP CER++ ++ + S      +S+S M
Sbjct: 246 KEVSELRALKLSP------HLYMHMKPPTTLTMCPSCERVAVTSSSSSVAPPVMNSSSPM 305

Query: 183 PPEAFLSALKLRQ 192
            P +  +A+ LRQ
Sbjct: 306 GPMSPWAAMPLRQ 308

[Close]

BLAST of Cp4.1LG00g02320 vs. TAIR10
Match: AT5G06710.1 (AT5G06710.1 homeobox from Arabidopsis thaliana)

HSP 1 Score: 139.8 bits (351), Expect = 1.8e-33
Identity = 78/133 (58.65%), Postives = 98/133 (73.68%), Query Frame = 1


Query: 41  RKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTE 100
           RKKLRLSKDQS  LE+SF+ + TLNPKQK ALA +L L+PRQVEVWFQNRRAR+KLKQTE
Sbjct: 189 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTE 248

Query: 101 RECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCER 160
            +CEYLKR   SLTE+NRRL++E++ELR +K +    +        LP + +TMCP CER
Sbjct: 249 VDCEYLKRCCESLTEENRRLQKEVKELRTLKTSTPFYMQ-------LPATTLTMCPSCER 308

Query: 161 MSASTITYSKGAS 174
           ++ S    S  A+
Sbjct: 309 VATSAAQPSTSAA 314

[Close]

BLAST of Cp4.1LG00g02320 vs. NCBI nr
Match: gi|700196341|gb|KGN51518.1| (hypothetical protein Csa_5G576600 [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 1.3e-62
Identity = 142/199 (71.36%), Postives = 161/199 (80.90%), Query Frame = 1


Query: 6   CAVREFDMNRLPEVGDGEEEWA------EEEEESYIND---CKPRKKLRLSKDQSRLLEE 65
           C VRE DMNR+P  G+ EE+WA      E EEES IN+    +PRKKLRLSKDQSRLLEE
Sbjct: 10  CVVRELDMNRVPAEGEAEEDWARGPSVEEGEEESSINNNGGTQPRKKLRLSKDQSRLLEE 69

Query: 66  SFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQ 125
           SFRLNHTLNPKQKE LAMELKLKPRQVEVWFQNRRARSKLKQTE ECEY+KR FGSLTEQ
Sbjct: 70  SFRLNHTLNPKQKEGLAMELKLKPRQVEVWFQNRRARSKLKQTELECEYMKRCFGSLTEQ 129

Query: 126 NRRLRQELEELRAMKVAPTAVVSAHGRQPPLPI-SAITMCPRCERMSASTITYS-KGASS 185
           NRRL+ ELEELRA+KVAP AVVS H R PPL + S IT+CPRCER+ +S  T + + A++
Sbjct: 130 NRRLQWELEELRAIKVAPPAVVSRHNRHPPLLMRSTITICPRCERIISSKNTVADQTATT 189

Query: 186 ASTMPPEAFLSALKLRQPS 194
           A+ MP +  LSAL+LRQPS
Sbjct: 190 ATAMPSKVVLSALQLRQPS 208

[Close]

BLAST of Cp4.1LG00g02320 vs. NCBI nr
Match: gi|778704059|ref|XP_011655468.1| (PREDICTED: homeobox-leucine zipper protein HOX3-like [Cucumis sativus])

HSP 1 Score: 244.2 bits (622), Expect = 1.9e-61
Identity = 141/197 (71.57%), Postives = 160/197 (81.22%), Query Frame = 1


Query: 8   VREFDMNRLPEVGDGEEEWA------EEEEESYIND---CKPRKKLRLSKDQSRLLEESF 67
           VRE DMNR+P  G+ EE+WA      E EEES IN+    +PRKKLRLSKDQSRLLEESF
Sbjct: 33  VRELDMNRVPAEGEAEEDWARGPSVEEGEEESSINNNGGTQPRKKLRLSKDQSRLLEESF 92

Query: 68  RLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNR 127
           RLNHTLNPKQKE LAMELKLKPRQVEVWFQNRRARSKLKQTE ECEY+KR FGSLTEQNR
Sbjct: 93  RLNHTLNPKQKEGLAMELKLKPRQVEVWFQNRRARSKLKQTELECEYMKRCFGSLTEQNR 152

Query: 128 RLRQELEELRAMKVAPTAVVSAHGRQPPLPI-SAITMCPRCERMSASTITYS-KGASSAS 187
           RL+ ELEELRA+KVAP AVVS H R PPL + S IT+CPRCER+ +S  T + + A++A+
Sbjct: 153 RLQWELEELRAIKVAPPAVVSRHNRHPPLLMRSTITICPRCERIISSKNTVADQTATTAT 212

Query: 188 TMPPEAFLSALKLRQPS 194
            MP +  LSAL+LRQPS
Sbjct: 213 AMPSKVVLSALQLRQPS 229

[Close]

BLAST of Cp4.1LG00g02320 vs. NCBI nr
Match: gi|659072906|ref|XP_008467159.1| (PREDICTED: homeobox-leucine zipper protein HOX3-like [Cucumis melo])

HSP 1 Score: 243.4 bits (620), Expect = 3.2e-61
Identity = 141/199 (70.85%), Postives = 159/199 (79.90%), Query Frame = 1


Query: 8   VREFDMNRLPEVGDGEEEWA-------EEEEESYIND----CKPRKKLRLSKDQSRLLEE 67
           VRE DMNR+P  G+ E +WA       E EEES IN+     +PRKKLRLSKDQSRLLEE
Sbjct: 33  VRELDMNRVPAEGEAEADWARGQSVEEEGEEESSINNNNGGTQPRKKLRLSKDQSRLLEE 92

Query: 68  SFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQ 127
           SFRLNHTLNPKQKE LAMELKLKPRQVEVWFQNRRARSKLKQTE ECEY+KR FGSLTEQ
Sbjct: 93  SFRLNHTLNPKQKEGLAMELKLKPRQVEVWFQNRRARSKLKQTELECEYMKRCFGSLTEQ 152

Query: 128 NRRLRQELEELRAMKVAPTAVVSAHGR-QPPLPISAITMCPRCERMSASTITYSKGASSA 187
           NRRL+ ELEELRA+KVAP AVVS H R QPPL  S IT+CPRCER++++  T ++ A++ 
Sbjct: 153 NRRLQWELEELRAIKVAPPAVVSRHNRSQPPLSRSTITICPRCERITSNKNTVAENATTT 212

Query: 188 ST-MPPEAFLSALKLRQPS 194
           +T M  E  LSALKLRQPS
Sbjct: 213 ATAMQSEVVLSALKLRQPS 231

[Close]

BLAST of Cp4.1LG00g02320 vs. NCBI nr
Match: gi|728816086|gb|KHG02059.1| (Homeobox-leucine zipper HOX3 [Gossypium arboreum])

HSP 1 Score: 227.3 bits (578), Expect = 2.4e-56
Identity = 121/180 (67.22%), Postives = 144/180 (80.00%), Query Frame = 1


Query: 2   EMGGCAVREFDMNRLPEVGDGEEEWA----EEEEESYINDCKPRKKLRLSKDQSRLLEES 61
           + GGC VR+ D+N++P     E+EW     E+EEES  N   PRKKLRL+K+QSRLLEES
Sbjct: 31  DQGGCTVRDLDINQVP----AEDEWITASMEDEEESCNNGAPPRKKLRLTKEQSRLLEES 90

Query: 62  FRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQN 121
           FRLNHTLNPKQKEALA++LKL+PRQVEVWFQNRRARSKLKQTE ECEYLKRWFGSLTEQN
Sbjct: 91  FRLNHTLNPKQKEALALQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQN 150

Query: 122 RRLRQELEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCERMSASTITYSKGASSAST 178
           RRL++E+EELRAMKVAP  V+S H  + PLP S +TMCPRCER++ +T    +  S+  T
Sbjct: 151 RRLQREVEELRAMKVAPPTVISPHSCE-PLPASTLTMCPRCERVTTTTTAAIEKGSAKMT 205

[Close]

BLAST of Cp4.1LG00g02320 vs. NCBI nr
Match: gi|823135022|ref|XP_012467291.1| (PREDICTED: homeobox-leucine zipper protein HOX3 [Gossypium raimondii])

HSP 1 Score: 226.1 bits (575), Expect = 5.3e-56
Identity = 125/192 (65.10%), Postives = 151/192 (78.65%), Query Frame = 1


Query: 2   EMGGCAVREFDMNRLPEVGDGEEEWA----EEEEESYINDCKPRKKLRLSKDQSRLLEES 61
           + GGC VR+ D+N++P     E+EW     E+EEES  N   PRKKLRL+K+QSRLLEES
Sbjct: 54  DQGGCTVRDLDINQVP----AEDEWITASMEDEEESCNNGAPPRKKLRLTKEQSRLLEES 113

Query: 62  FRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQN 121
           FRLNHTLNPKQK ALA++LKL+PRQVEVWFQNRRARSKLKQTE ECEYLKRWFGSLTEQN
Sbjct: 114 FRLNHTLNPKQKGALALQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQN 173

Query: 122 RRLRQELEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCERM-SASTITYSKGAS--S 181
           RRL++E+EELRAMKVAP  V+S H  + PLP S +TMCPRCER+ + +T    KG++  +
Sbjct: 174 RRLQREVEELRAMKVAPPTVISPHSCE-PLPASTLTMCPRCERVTTTTTAAIEKGSAKMT 233

Query: 182 ASTMPPEAFLSA 187
           A+T P    LS+
Sbjct: 234 AATNPTATTLSS 240

The following BLAST results are available for this feature:

BLAST of Cp4.1LG00g02320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HOX3_ORYSJ	2.7e-52	64.17	Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica GN=HOX3 PE=...	[more]
HOX3_ORYSI	2.7e-52	64.17	Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica GN=HOX3 PE=1 ...	[more]
ATB17_ARATH	6.4e-46	59.44	Homeobox-leucine zipper protein ATHB-17 OS=Arabidopsis thaliana GN=ATHB-17 PE=2 ...	[more]
ATHBX_ARATH	9.3e-37	56.88	Homeobox-leucine zipper protein ATHB-X OS=Arabidopsis thaliana GN=ATHB-X PE=2 SV...	[more]
HOX1_ORYSJ	9.7e-34	56.74	Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. japonica GN=HOX1 PE=...	[more]

BLAST of Cp4.1LG00g02320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPM6_CUCSA	9.0e-63	71.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G576600 PE=4 SV=1	[more]
A0A0B0MRC6_GOSAR	1.6e-56	67.22	Homeobox-leucine zipper HOX3 OS=Gossypium arboreum GN=F383_25892 PE=4 SV=1	[more]
A0A0D2MCI0_GOSRA	3.7e-56	65.10	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G178800 PE=4 SV=1	[more]
A0A061EF99_THECC	6.3e-56	61.50	Homeobox-leucine zipper protein HOX3 OS=Theobroma cacao GN=TCM_010868 PE=4 SV=1	[more]
B9SJ50_RICCO	6.9e-55	68.33	Homeobox protein, putative OS=Ricinus communis GN=RCOM_0843040 PE=4 SV=1	[more]

BLAST of Cp4.1LG00g02320 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01430.1	3.6e-47	59.44	homeobox-leucine zipper protein 17	[more]
AT1G70920.1	5.3e-38	56.88	homeobox-leucine zipper protein 18	[more]
AT2G44910.1	6.0e-34	54.73	homeobox-leucine zipper protein 4	[more]
AT3G60390.1	7.9e-34	46.63	homeobox-leucine zipper protein 3	[more]
AT5G06710.1	1.8e-33	58.65	homeobox from Arabidopsis thaliana	[more]

BLAST of Cp4.1LG00g02320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700196341\|gb\|KGN51518.1\|	1.3e-62	71.36	hypothetical protein Csa_5G576600 [Cucumis sativus]	[more]
gi\|778704059\|ref\|XP_011655468.1\|	1.9e-61	71.57	PREDICTED: homeobox-leucine zipper protein HOX3-like [Cucumis sativus]	[more]
gi\|659072906\|ref\|XP_008467159.1\|	3.2e-61	70.85	PREDICTED: homeobox-leucine zipper protein HOX3-like [Cucumis melo]	[more]
gi\|728816086\|gb\|KHG02059.1\|	2.4e-56	67.22	Homeobox-leucine zipper HOX3 [Gossypium arboreum]	[more]
gi\|823135022\|ref\|XP_012467291.1\|	5.3e-56	65.10	PREDICTED: homeobox-leucine zipper protein HOX3 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR017970	Homeobox_CS
IPR009057	Homeobox-like_sf
IPR003106	Leu_zip_homeo
IPR001356	Homeobox_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG00g02320.1	Cp4.1LG00g02320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001356	Homeobox domain	PFAM	PF00046	Homeobox	coord: 41..95 score: 1.2
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 39..101 score: 9.4
IPR001356	Homeobox domain	PROFILE	PS50071	HOMEOBOX_2	coord: 37..97 score: 16
IPR003106	Leucine zipper, homeobox-associated	PFAM	PF02183	HALZ	coord: 97..131 score: 3.7
IPR003106	Leucine zipper, homeobox-associated	SMART	SM00340	halz	coord: 97..140 score: 5.5
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 41..95 score: 6.3
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 33..98 score: 7.7
IPR017970	Homeobox, conserved site	PROSITE	PS00027	HOMEOBOX_1	coord: 72..95 scor
None	No IPR available	unknown	Coil	Coil	coord: 110..133 scor
None	No IPR available	PANTHER	PTHR24326	FAMILY NOT NAMED	coord: 12..161 score: 6.7
None	No IPR available	PANTHER	PTHR24326:SF114	HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17-RELATED	coord: 12..161 score: 6.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG00g02320	Cucurbita moschata (Rifu)	cmocpeB080