Cp4.1LG00g00390 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG00g00390
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionChaperone protein dnaJ 16
LocationCp4.1LG00 : 694490 .. 696760 (-)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGACGCACGGATCCAAATCCGAAAAGCAAGATGCCGCGGTGATGAACCGTCGAGATCCGTATGAGGTACTCGGTGTCTCCAGAAACTCCACGGATCAGGAAATCAAAAGCGCTTACAGAAGAATGGCTCTCAAGTAGGTTTTAAATATGCATATTTTACCTCCATTTGCTTCATTTTCTGGTTATATTCGTAGAACTTCGACCTTTTTCTGGATATATTTCTAGTTATNCGTCACTAATTAGGTTAAAGAAAATTAGGGGCGTTACATATGTCTTGCACTATTCGACCATGGAATAGTGTAGGAATAGGAAGCTTGTTGGGTGCCATGAGGGGAGCTTCTGACTAGTGCTTAATAGTAGGCACATATGGAGATATAAGCAGATTAAGAGGCCACCTATAGTGAGCGGTGACTCCTCCATGCCTGTTAGACTTCCCTAGAGCCCGAGACATAGAAGAGCACTCTGACTTATGCACAGGAAGCATAATTGCCTATTGGACCTTGAAAAGTAGGAAATGAGAGGCTAAGTGCACCTTAAAATCAAAATACACCTCGATGGGTGAGTTGCATCCTTGGAATAAGAGTAAGTACGGTATATGACCTTAAGAGCCAGAGAGAATTTGAAATGAACTCAAGCCATGAAATTGGTTGGAATTTAAGAAATATTAAAGAGAAGAAGTTTTGATGGTATCCTACCCGTTAAGTATCAATTCTGTAATGAACAATTTATTAATAATCCAACCATAAATTAAGTGCCTTCGAACTAGTAAGAGGATAAAAGTTCATTATTCAAGTCTCAAAATTAGGCGCGGAAGAAATGGCACTTAAGCATGAAATTGAGAGTAATTAAAGGCAGTAATAGTGTTATTATTTGGGTAAGTATGAAATCGTAATCATTGACGTTTAAAATGGGGTCACCCAATATAATAATGTTAAAATAATAGTAATAATAATAATAAAATAATATGTTTTTGGGGGTTGGAGAAAGGTGTTGAGATTTCTGAGTGGGGCCACCACAGTGATAGCGATGTGTTTGTATAAAAACATTTATTGTCCCAATCTTCATTTTTGTATAGGAAACAAATAAAATATATACATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTGCCATATATGAGAACTTAACAAAATTAGGCAATCAGCTTAATGTCCTTTACTAATCACTATATTTCCTTCAAAAATTTAATTTCCCCATTTAACCAAAATTTAGATGTGAATTTACTTTTTATGGAGGAAAATAGGTTAATTTATTAAATAAATAAATAATCTCCAAAATCTCAATAATATATTATATATATATATATATATATTTTTTTTTTTTAATACTGAAAATATTTTATTTTTTAATTTTTAAAAACTTTAAACTTTTTTTTTTCTTAAATATTCTTTTAATCTCTTTCGTTCTTGATTTTTAAAATTTTAGTATTTCCAAAATAAATATAAGAAATTTTAACATCTATATAATCAATTTCTTTAAATTAAATTAACTCTGAAAATAGAGAAATAATTTATGAATGAGTTTGGTCAGACAATAATTTTTAATTTTTTTTTTTTAAATTTAGAGATATAAAAGTTTTTTGAAACGAGTAATTTTAGTTTTATTATATATATTTGAAATGATATTAATTAATTTGAAAAGTAATTTTGAAATAAAATTAATTAATTTTTGGAAGTTCAAAAGTTGTAGCGTAGCTTGGCGGAGGCACTGAAGGTGGTGGCTTAGACGAAAGAGCCAAGGAGGGGCGCAATACGCACAAAAAGCGAAAGGGTTTGAACTTTGAATTTTCATTTTGTCCATTTCCGAAACGCACACATCTTACACCTAATCTCCTCTCTCCCTCCCTCTCTCTCTTCGTTCCATGTGATCCAAAGGGCAAAAGCTTCGGCTGGATGTCCATGGATTTGTTCTCTCTTAACACCAGCTGACGTTGTTTGCGTTGGTCGAGAGCAATTTCCATGGCCAAATTGCAGTTGCAAGCTCCACTTTTCGTCTGAGAGAAATCCTAGCTGCAGACGGGGATTTAGGGTTTTGTTTTAAGGAAAATCGCATCGTTTTCAAGAATGCCGACGCACGGATCCAAATCCGAAAAGCAAGATGCCGCGGTGATGAACCGTCGAGATCCGTATGAGGTACTCGGTGTCTCCAGAAACTCCACGGATCAGGAAATCAAAAGCGCTTACAGAAGAATGGCTCTCAAGTAG

mRNA sequence

ATGCCGACGCACGGATCCAAATCCGAAAAGCAAGATGCCGCGGTGATGAACCGTCGAGATCCGTATGAGGTACTCGGTGTCTCCAGAAACTCCACGGATCAGGAAATCAAAAGCGCTTACAGAAGAATGGCTCTCAAAATGCCGACGCACGGATCCAAATCCGAAAAGCAAGATGCCGCGGTGATGAACCGTCGAGATCCGTATGAGGTACTCGGTGTCTCCAGAAACTCCACGGATCAGGAAATCAAAAGCGCTTACAGAAGAATGGCTCTCAAGTAG

Coding sequence (CDS)

ATGCCGACGCACGGATCCAAATCCGAAAAGCAAGATGCCGCGGTGATGAACCGTCGAGATCCGTATGAGGTACTCGGTGTCTCCAGAAACTCCACGGATCAGGAAATCAAAAGCGCTTACAGAAGAATGGCTCTCAAAATGCCGACGCACGGATCCAAATCCGAAAAGCAAGATGCCGCGGTGATGAACCGTCGAGATCCGTATGAGGTACTCGGTGTCTCCAGAAACTCCACGGATCAGGAAATCAAAAGCGCTTACAGAAGAATGGCTCTCAAGTAG

Protein sequence

MPTHGSKSEKQDAAVMNRRDPYEVLGVSRNSTDQEIKSAYRRMALKMPTHGSKSEKQDAAVMNRRDPYEVLGVSRNSTDQEIKSAYRRMALK
BLAST of Cp4.1LG00g00390 vs. Swiss-Prot
Match: DNJ16_ARATH (Chaperone protein dnaJ 16 OS=Arabidopsis thaliana GN=ATJ16 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.8e-12
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 1

Query: 1  MPTHGSKSEKQDAAVMNRRDPYEVLGVSRNSTDQEIKSAYRRMALK 47
          MP H SKSEK+DA    RRDPYEVLGV RNSTDQEIKSAYR++ALK
Sbjct: 1  MPGHRSKSEKKDADKQLRRDPYEVLGVLRNSTDQEIKSAYRKLALK 46

BLAST of Cp4.1LG00g00390 vs. Swiss-Prot
Match: DNJ39_ARATH (Chaperone protein dnaJ 39 OS=Arabidopsis thaliana GN=ATJ39 PE=2 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-09
Identity = 40/82 (48.78%), Postives = 49/82 (59.76%), Query Frame = 1

Query: 1  MPTHGSKSEKQDAAV---MNRRDPYEVLGVSRNSTDQEIKSAYRRMALKMPTHGSKSEKQ 60
          M TH S+SE +DA     + RR+PYEVLG+  NSTDQEIKSAYRRMAL+   H  K+   
Sbjct: 1  MATHSSRSENKDAGEEDELRRRNPYEVLGIPSNSTDQEIKSAYRRMALRY--HPDKNPDD 60

Query: 61 DAAVMNRRD---PYEVLGVSRN 77
            A    ++    YEVL    N
Sbjct: 61 PVAAEMFKEVTFAYEVLSDPEN 80

BLAST of Cp4.1LG00g00390 vs. Swiss-Prot
Match: DNAJ_BORBR (Chaperone protein DnaJ OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-06
Identity = 28/74 (37.84%), Postives = 48/74 (64.86%), Query Frame = 1

Query: 16 MNRRDPYEVLGVSRNSTDQEIKSAYRRMALKM-PTHGSKSEKQDAAVMNRRDPYEVLGVS 75
          M +RD YEVLGV++N++D+++K AYR++A+K  P     S++ +      ++ YEVLG  
Sbjct: 1  MAKRDYYEVLGVAKNASDEDLKKAYRKLAMKYHPDRNPDSKEAEEKFKEAKEAYEVLG-- 60

Query: 76 RNSTDQEIKSAYRR 89
              D++ ++AY R
Sbjct: 61 ----DEQKRAAYDR 68

BLAST of Cp4.1LG00g00390 vs. Swiss-Prot
Match: DNAJ_BORPE (Chaperone protein DnaJ OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-06
Identity = 28/74 (37.84%), Postives = 48/74 (64.86%), Query Frame = 1

Query: 16 MNRRDPYEVLGVSRNSTDQEIKSAYRRMALKM-PTHGSKSEKQDAAVMNRRDPYEVLGVS 75
          M +RD YEVLGV++N++D+++K AYR++A+K  P     S++ +      ++ YEVLG  
Sbjct: 1  MAKRDYYEVLGVAKNASDEDLKKAYRKLAMKYHPDRNPDSKEAEEKFKEAKEAYEVLG-- 60

Query: 76 RNSTDQEIKSAYRR 89
              D++ ++AY R
Sbjct: 61 ----DEQKRAAYDR 68

BLAST of Cp4.1LG00g00390 vs. Swiss-Prot
Match: DNAJ_BORPA (Chaperone protein DnaJ OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-06
Identity = 28/74 (37.84%), Postives = 48/74 (64.86%), Query Frame = 1

Query: 16 MNRRDPYEVLGVSRNSTDQEIKSAYRRMALKM-PTHGSKSEKQDAAVMNRRDPYEVLGVS 75
          M +RD YEVLGV++N++D+++K AYR++A+K  P     S++ +      ++ YEVLG  
Sbjct: 1  MAKRDYYEVLGVAKNASDEDLKKAYRKLAMKYHPDRNPDSKEAEEKFKEAKEAYEVLG-- 60

Query: 76 RNSTDQEIKSAYRR 89
              D++ ++AY R
Sbjct: 61 ----DEQKRAAYDR 68

BLAST of Cp4.1LG00g00390 vs. TrEMBL
Match: A0A0A0KRV9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G467910 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.2e-14
Identity = 41/46 (89.13%), Postives = 45/46 (97.83%), Query Frame = 1

Query: 1  MPTHGSKSEKQDAAVMNRRDPYEVLGVSRNSTDQEIKSAYRRMALK 47
          MP HGSKS+KQDAA+++RRDPYEVLGVSRNSTDQEIKSAYRRMALK
Sbjct: 1  MPPHGSKSDKQDAALLHRRDPYEVLGVSRNSTDQEIKSAYRRMALK 46

BLAST of Cp4.1LG00g00390 vs. TrEMBL
Match: A0A059D846_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03370 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 5.9e-12
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 1

Query: 1  MPTHGSKSEKQDAAVMNRRDPYEVLGVSRNSTDQEIKSAYRRMALK 47
          MP H SKSEK+DAA   RRDPYEVLGV+RNSTDQEIKSAYRRMALK
Sbjct: 1  MPAHKSKSEKRDAARQIRRDPYEVLGVARNSTDQEIKSAYRRMALK 46

BLAST of Cp4.1LG00g00390 vs. TrEMBL
Match: W9S1Y2_9ROSA (Chaperone protein dnaJ 16 OS=Morus notabilis GN=L484_027835 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.9e-11
Identity = 39/46 (84.78%), Postives = 39/46 (84.78%), Query Frame = 1

Query: 1  MPTHGSKSEKQDAAVMNRRDPYEVLGVSRNSTDQEIKSAYRRMALK 47
          MP   SKSEK DAA   RRDPYEVLGVSRNSTDQEIKSAYRRMALK
Sbjct: 1  MPASRSKSEKHDAAKQLRRDPYEVLGVSRNSTDQEIKSAYRRMALK 46

BLAST of Cp4.1LG00g00390 vs. TrEMBL
Match: V4K9N1_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10007684mg PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 8.5e-11
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 1

Query: 1  MPTHGSKSEKQDAAVMNRRDPYEVLGVSRNSTDQEIKSAYRRMALK 47
          MP H SKSEK+DA    RRDPYEVLGV RNSTDQEIKSAYR+MALK
Sbjct: 1  MPAHRSKSEKKDAEKQLRRDPYEVLGVLRNSTDQEIKSAYRKMALK 46

BLAST of Cp4.1LG00g00390 vs. TrEMBL
Match: A0A087HQS3_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G261200 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 8.5e-11
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 1

Query: 1  MPTHGSKSEKQDAAVMNRRDPYEVLGVSRNSTDQEIKSAYRRMALK 47
          MP H SKSEK+DA    RRDPYEVLGV RNSTDQEIKSAYR+MALK
Sbjct: 1  MPAHRSKSEKKDAEKQLRRDPYEVLGVLRNSTDQEIKSAYRKMALK 46

BLAST of Cp4.1LG00g00390 vs. TAIR10
Match: AT1G24120.1 (AT1G24120.1 ARG1-like 1)

HSP 1 Score: 72.0 bits (175), Expect = 2.1e-13
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 1

Query: 1  MPTHGSKSEKQDAAVMNRRDPYEVLGVSRNSTDQEIKSAYRRMALK 47
          MP H SKSEK+DA    RRDPYEVLGV RNSTDQEIKSAYR++ALK
Sbjct: 1  MPGHRSKSEKKDADKQLRRDPYEVLGVLRNSTDQEIKSAYRKLALK 46

BLAST of Cp4.1LG00g00390 vs. TAIR10
Match: AT1G59980.1 (AT1G59980.1 ARG1-like 2)

HSP 1 Score: 63.9 bits (154), Expect = 5.8e-11
Identity = 40/82 (48.78%), Postives = 49/82 (59.76%), Query Frame = 1

Query: 1  MPTHGSKSEKQDAAV---MNRRDPYEVLGVSRNSTDQEIKSAYRRMALKMPTHGSKSEKQ 60
          M TH S+SE +DA     + RR+PYEVLG+  NSTDQEIKSAYRRMAL+   H  K+   
Sbjct: 1  MATHSSRSENKDAGEEDELRRRNPYEVLGIPSNSTDQEIKSAYRRMALRY--HPDKNPDD 60

Query: 61 DAAVMNRRD---PYEVLGVSRN 77
            A    ++    YEVL    N
Sbjct: 61 PVAAEMFKEVTFAYEVLSDPEN 80

BLAST of Cp4.1LG00g00390 vs. TAIR10
Match: AT1G68370.1 (AT1G68370.1 Chaperone DnaJ-domain superfamily protein)

HSP 1 Score: 51.6 bits (122), Expect = 3.0e-07
Identity = 25/41 (60.98%), Postives = 33/41 (80.49%), Query Frame = 1

Query: 6  SKSEKQDAAVMNRRDPYEVLGVSRNSTDQEIKSAYRRMALK 47
          +K  +  +A  NRRDPYEVL VS+++ DQEIKSAYR++ALK
Sbjct: 3  AKKLEGSSAPANRRDPYEVLCVSKDANDQEIKSAYRKLALK 43

BLAST of Cp4.1LG00g00390 vs. NCBI nr
Match: gi|449452046|ref|XP_004143771.1| (PREDICTED: chaperone protein dnaJ 16 isoform X1 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 3.1e-14
Identity = 41/46 (89.13%), Postives = 45/46 (97.83%), Query Frame = 1

Query: 1  MPTHGSKSEKQDAAVMNRRDPYEVLGVSRNSTDQEIKSAYRRMALK 47
          MP HGSKS+KQDAA+++RRDPYEVLGVSRNSTDQEIKSAYRRMALK
Sbjct: 1  MPPHGSKSDKQDAALLHRRDPYEVLGVSRNSTDQEIKSAYRRMALK 46

BLAST of Cp4.1LG00g00390 vs. NCBI nr
Match: gi|778702900|ref|XP_011655277.1| (PREDICTED: chaperone protein dnaJ 16 isoform X2 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 3.1e-14
Identity = 41/46 (89.13%), Postives = 45/46 (97.83%), Query Frame = 1

Query: 1  MPTHGSKSEKQDAAVMNRRDPYEVLGVSRNSTDQEIKSAYRRMALK 47
          MP HGSKS+KQDAA+++RRDPYEVLGVSRNSTDQEIKSAYRRMALK
Sbjct: 1  MPPHGSKSDKQDAALLHRRDPYEVLGVSRNSTDQEIKSAYRRMALK 46

BLAST of Cp4.1LG00g00390 vs. NCBI nr
Match: gi|659131600|ref|XP_008465767.1| (PREDICTED: chaperone protein dnaJ 16 isoform X1 [Cucumis melo])

HSP 1 Score: 85.1 bits (209), Expect = 6.9e-14
Identity = 40/46 (86.96%), Postives = 45/46 (97.83%), Query Frame = 1

Query: 1  MPTHGSKSEKQDAAVMNRRDPYEVLGVSRNSTDQEIKSAYRRMALK 47
          MP HGSKS+KQDA++++RRDPYEVLGVSRNSTDQEIKSAYRRMALK
Sbjct: 1  MPPHGSKSDKQDASLLHRRDPYEVLGVSRNSTDQEIKSAYRRMALK 46

BLAST of Cp4.1LG00g00390 vs. NCBI nr
Match: gi|659131604|ref|XP_008465769.1| (PREDICTED: chaperone protein dnaJ 16 isoform X2 [Cucumis melo])

HSP 1 Score: 85.1 bits (209), Expect = 6.9e-14
Identity = 40/46 (86.96%), Postives = 45/46 (97.83%), Query Frame = 1

Query: 1  MPTHGSKSEKQDAAVMNRRDPYEVLGVSRNSTDQEIKSAYRRMALK 47
          MP HGSKS+KQDA++++RRDPYEVLGVSRNSTDQEIKSAYRRMALK
Sbjct: 1  MPPHGSKSDKQDASLLHRRDPYEVLGVSRNSTDQEIKSAYRRMALK 46

BLAST of Cp4.1LG00g00390 vs. NCBI nr
Match: gi|702277334|ref|XP_010044663.1| (PREDICTED: chaperone protein dnaJ 16 [Eucalyptus grandis])

HSP 1 Score: 78.2 bits (191), Expect = 8.5e-12
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 1

Query: 1  MPTHGSKSEKQDAAVMNRRDPYEVLGVSRNSTDQEIKSAYRRMALK 47
          MP H SKSEK+DAA   RRDPYEVLGV+RNSTDQEIKSAYRRMALK
Sbjct: 1  MPAHKSKSEKRDAARQIRRDPYEVLGVARNSTDQEIKSAYRRMALK 46

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
DNJ16_ARATH3.8e-1278.26Chaperone protein dnaJ 16 OS=Arabidopsis thaliana GN=ATJ16 PE=2 SV=1[more]
DNJ39_ARATH1.0e-0948.78Chaperone protein dnaJ 39 OS=Arabidopsis thaliana GN=ATJ39 PE=2 SV=2[more]
DNAJ_BORBR1.1e-0637.84Chaperone protein DnaJ OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC ... [more]
DNAJ_BORPE1.1e-0637.84Chaperone protein DnaJ OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 /... [more]
DNAJ_BORPA1.1e-0637.84Chaperone protein DnaJ OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 ... [more]
Match NameE-valueIdentityDescription
A0A0A0KRV9_CUCSA2.2e-1489.13Uncharacterized protein OS=Cucumis sativus GN=Csa_5G467910 PE=4 SV=1[more]
A0A059D846_EUCGR5.9e-1284.78Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03370 PE=4 SV=1[more]
W9S1Y2_9ROSA2.9e-1184.78Chaperone protein dnaJ 16 OS=Morus notabilis GN=L484_027835 PE=4 SV=1[more]
V4K9N1_EUTSA8.5e-1180.43Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10007684mg PE=4 SV=1[more]
A0A087HQS3_ARAAL8.5e-1180.43Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G261200 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G24120.12.1e-1378.26 ARG1-like 1[more]
AT1G59980.15.8e-1148.78 ARG1-like 2[more]
AT1G68370.13.0e-0760.98 Chaperone DnaJ-domain superfamily protein[more]
Match NameE-valueIdentityDescription
gi|449452046|ref|XP_004143771.1|3.1e-1489.13PREDICTED: chaperone protein dnaJ 16 isoform X1 [Cucumis sativus][more]
gi|778702900|ref|XP_011655277.1|3.1e-1489.13PREDICTED: chaperone protein dnaJ 16 isoform X2 [Cucumis sativus][more]
gi|659131600|ref|XP_008465767.1|6.9e-1486.96PREDICTED: chaperone protein dnaJ 16 isoform X1 [Cucumis melo][more]
gi|659131604|ref|XP_008465769.1|6.9e-1486.96PREDICTED: chaperone protein dnaJ 16 isoform X2 [Cucumis melo][more]
gi|702277334|ref|XP_010044663.1|8.5e-1284.78PREDICTED: chaperone protein dnaJ 16 [Eucalyptus grandis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001623DnaJ_domain
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009737 response to abscisic acid
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG00g00390.1Cp4.1LG00g00390.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001623DnaJ domainPRINTSPR00625JDOMAINcoord: 86..92
score: 6.3E-7coord: 22..40
score: 6.
IPR001623DnaJ domainGENE3DG3DSA:1.10.287.110coord: 65..92
score: 2.2E-9coord: 13..54
score: 4.2
IPR001623DnaJ domainPFAMPF00226DnaJcoord: 66..92
score: 4.7E-8coord: 20..48
score: 7.
IPR001623DnaJ domainSMARTSM00271dnaj_3coord: 19..76
score: 0.
IPR001623DnaJ domainPROFILEPS50076DNAJ_2coord: 20..90
score: 11
IPR001623DnaJ domainunknownSSF46565Chaperone J-domaincoord: 61..92
score: 4.58E-10coord: 15..47
score: 1.83
NoneNo IPR availablePANTHERPTHR24078DNAJ HOMOLOG SUBFAMILY C MEMBERcoord: 10..92
score: 4.3
NoneNo IPR availablePANTHERPTHR24078:SF242CHAPERONE PROTEIN DNAJ 16-RELATEDcoord: 10..92
score: 4.3

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG00g00390Cucurbita maxima (Rimu)cmacpeB761
Cp4.1LG00g00390Cucurbita moschata (Rifu)cmocpeB715
Cp4.1LG00g00390Cucumber (Chinese Long) v2cpecuB015
Cp4.1LG00g00390Bottle gourd (USVL1VR-Ls)cpelsiB009
Cp4.1LG00g00390Watermelon (Charleston Gray)cpewcgB000
Cp4.1LG00g00390Watermelon (97103) v1cpewmB001
Cp4.1LG00g00390Melon (DHL92) v3.6.1cpemedB003