Cp4.1LG00g00060 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG00g00060
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG00 : 148088 .. 149986 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGGCCGCCAAAATTAAATCAGAAAATTGTACGTTGGTTTTGGGGTACTCTCATCAGTCGTCACTCCCACTCCCCCAGGGTTTAACCTTCGCCCCTCCGCCCCTCCGCCCCTCCGCCATGGCCGTGCTCAGACCCACAGCCCTGAAGCTACCAGTCACTATAAACCCCTCTGAACTTTGGTTTAGCCCAAAACTTCTCAAAACGACTCCTTCTATAAGCCACTCCGGGGGCAAGCTGGGCAGAGTTGCAGCGATGATCACTTTGGGGGCCTCCACTTCCCAAGCCTCTTCGTTGATTTCTCAATGGCCCTCCTATTTCTTTCTATGGCGATCTAACTATGTTTCTAATTCTTCTATTTCCATTTGCGCCTCCTCCAAGAGGCTCTACAGGTCACTTTTCTCTTGGGTTTGTTCTTTACGGGAGGCTTTTGTGTTATCTTTTTGTTGTTAATCGGGGCGTGGAGAACATTTTGTCCTCTGTATGGGGAATTAGCTGCATTTTTGTGTGTGTTTATGTGCTTGTTGTTCGTTCCAGACATTTGTTAGAAGTTTTCTTGACTGAAACTGCGAAGTGAGTTTCCTCCCCCTGCATGTGATAGGGAACTTGTGATATGGGGAAGGACATGTTTGGTGGGTGTGATTTCTAGGAATTTTTAGTTATCATCATGATGATATCTGAAAAAATGAACTCGTTGTTAACCTCCTATTCCGTTCACTCTGTTTCTTGTTGGTAGAATGTCGTTCTTTGAATATGATTTGAAGCTTTATGGCAATGGTTCTTTAGTATGATTTTTGAGGCTTTTAAATTCAGTCATGAAGAAGTATATCGGTTATCTTTCTAGGCACTTTAGCTCTTTTCTCCTATATCGTTATCTAGTCCATAAAATTGTGTCATATTATTTGGTTTCATCTATGGGGAGGACGTTTACCTTTCCATATGAGAGTGATTGAGTCTTAGGTAATCGAACTCAAATTTAGCAGAAGTGATACTGACACCTTTCTTGGGTCATCCATTTTGTTGTTTTAATTGTTTATGTGTCTTACATTGTGCAGTTTATCGATTAATTATAGTGAGAGTATGGTTGTGAAGAACTTCGACCTTAATATTTCTGAAAATATTGATTTGCAGGGCTGAATTTTGACCTCTGAAGAATTTTGGCAACGCTTCTCCAAATGTGAATATGTTTCATGCTTCCTTGCAGTGTCGACAAAGTTCTTTTTTGTGCACCAATTCATTTTTTGAAACTAGACAACATGACAAGGAGAGGGCGTTTCTGTCTGATGTAAATGATTGGTCTAAGAGTACTAGGCAGCTGAAACAAGAGAAGCTCTTTAGGTTTTCAGAAACTGAGATCCTGACGAAGAATGACGAAGAAAAGCTAAGAAAAAAAGAAAATCTCATTGACTATGGGACTTTGCATTGTTACAACAGTCTTTCCCCTCCATATTCTAAGGTTCAGTCAAATTTGGGGAATGGCAATGGAGACACTAATTCTTATTCTGGGGAATGGCCCATGAGCAAGCCTGCAAATAATGTTTTGCATAGTCAGGTTGTTCCTATGCAAAGTAACAAAAAGTATTCTGTTTCTCAAAATGGAAAGGGGTCAATTATGCGTCACGTACCAAATGTTTCACCTAATGGCAGAAATAGAAATATCTCTTTGGGAAAGGTGAATAGTGTACTAAAAACTTCGCAATTTACTGAAGCTGCTAATGGAATAAGTAAGGGTGTAGCTGTGGAAGAATTTTCTAAAGTGATCGTCAATGGAAGTGGCACCAAGATGATGGAAGTACTTGCAACTGCTCATAAGCCAGATATAAAGGAGAGGCTTAATGGTGTATATGAAAGCGTTCTTGTTGTTGATGGTGTATCTGCAGCAAAGGAAGTTGTTTCAATAA

mRNA sequence

TGGGGCCGCCAAAATTAAATCAGAAAATTGTACGTTGGTTTTGGGGTACTCTCATCAGTCGTCACTCCCACTCCCCCAGGGTTTAACCTTCGCCCCTCCGCCCCTCCGCCCCTCCGCCATGGCCGTGCTCAGACCCACAGCCCTGAAGCTACCAGTCACTATAAACCCCTCTGAACTTTGGTTTAGCCCAAAACTTCTCAAAACGACTCCTTCTATAAGCCACTCCGGGGGCAAGCTGGGCAGAGTTGCAGCGATGATCACTTTGGGGGCCTCCACTTCCCAAGCCTCTTCGTTGATTTCTCAATGGCCCTCCTATTTCTTTCTATGGCGATCTAACTATGTTTCTAATTCTTCTATTTCCATTTGCGCCTCCTCCAAGAGGCTCTACAGACATTTGTTAGAAGTTTTCTTGACTGAAACTGCGAAACAACATGACAAGGAGAGGGCGTTTCTGTCTGATGTAAATGATTGGTCTAAGAGTACTAGGCAGCTGAAACAAGAGAAGCTCTTTAGGTTTTCAGAAACTGAGATCCTGACGAAGAATGACGAAGAAAAGCTAAGAAAAAAAGAAAATCTCATTGACTATGGGACTTTGCATTGTTACAACAGTCTTTCCCCTCCATATTCTAAGGTTCAGTCAAATTTGGGGAATGGCAATGGAGACACTAATTCTTATTCTGGGGAATGGCCCATGAGCAAGCCTGCAAATAATGTTTTGCATAGTCAGGTTGTTCCTATGCAAAGTAACAAAAAGTATTCTGTTTCTCAAAATGGAAAGGGGTCAATTATGCGTCACGTACCAAATGTTTCACCTAATGGCAGAAATAGAAATATCTCTTTGGGAAAGGTGAATAGTGTACTAAAAACTTCGCAATTTACTGAAGCTGCTAATGGAATAAGTAAGGGTGTAGCTGTGGAAGAATTTTCTAAAGTGATCGTCAATGGAAGTGGCACCAAGATGATGGAACAAAGGAAGTTGTTTCAATAA

Coding sequence (CDS)

ATGGCCGTGCTCAGACCCACAGCCCTGAAGCTACCAGTCACTATAAACCCCTCTGAACTTTGGTTTAGCCCAAAACTTCTCAAAACGACTCCTTCTATAAGCCACTCCGGGGGCAAGCTGGGCAGAGTTGCAGCGATGATCACTTTGGGGGCCTCCACTTCCCAAGCCTCTTCGTTGATTTCTCAATGGCCCTCCTATTTCTTTCTATGGCGATCTAACTATGTTTCTAATTCTTCTATTTCCATTTGCGCCTCCTCCAAGAGGCTCTACAGACATTTGTTAGAAGTTTTCTTGACTGAAACTGCGAAACAACATGACAAGGAGAGGGCGTTTCTGTCTGATGTAAATGATTGGTCTAAGAGTACTAGGCAGCTGAAACAAGAGAAGCTCTTTAGGTTTTCAGAAACTGAGATCCTGACGAAGAATGACGAAGAAAAGCTAAGAAAAAAAGAAAATCTCATTGACTATGGGACTTTGCATTGTTACAACAGTCTTTCCCCTCCATATTCTAAGGTTCAGTCAAATTTGGGGAATGGCAATGGAGACACTAATTCTTATTCTGGGGAATGGCCCATGAGCAAGCCTGCAAATAATGTTTTGCATAGTCAGGTTGTTCCTATGCAAAGTAACAAAAAGTATTCTGTTTCTCAAAATGGAAAGGGGTCAATTATGCGTCACGTACCAAATGTTTCACCTAATGGCAGAAATAGAAATATCTCTTTGGGAAAGGTGAATAGTGTACTAAAAACTTCGCAATTTACTGAAGCTGCTAATGGAATAAGTAAGGGTGTAGCTGTGGAAGAATTTTCTAAAGTGATCGTCAATGGAAGTGGCACCAAGATGATGGAACAAAGGAAGTTGTTTCAATAA

Protein sequence

MAVLRPTALKLPVTINPSELWFSPKLLKTTPSISHSGGKLGRVAAMITLGASTSQASSLISQWPSYFFLWRSNYVSNSSISICASSKRLYRHLLEVFLTETAKQHDKERAFLSDVNDWSKSTRQLKQEKLFRFSETEILTKNDEEKLRKKENLIDYGTLHCYNSLSPPYSKVQSNLGNGNGDTNSYSGEWPMSKPANNVLHSQVVPMQSNKKYSVSQNGKGSIMRHVPNVSPNGRNRNISLGKVNSVLKTSQFTEAANGISKGVAVEEFSKVIVNGSGTKMMEQRKLFQ

Homology

[Close]

BLAST of Cp4.1LG00g00060 vs. TrEMBL
Match: A0A0A0L6C2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G078000 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 9.5e-24
Identity = 78/176 (44.32%), Postives = 113/176 (64.20%), Query Frame = 1


Query: 108 ERAFLSDVNDWSKSTRQLKQEKLFRFSETEILTKNDEEKLRKKENLIDYGTLHCYNSLSP 167
           +R+  S+V+D+  S+  +  ++ FR        K +     + +N++   T++   + +P
Sbjct: 46  KRSNASNVSDYVNSSTNILSDE-FR--------KQEPINSERTKNVV---TINRMENKAP 105

Query: 168 PYSKVQSNLGNGNGDTNSYSGEWPMSKPANNVLHSQVVPMQSNKKYSVSQNGKGSIMRHV 227
                + + G  NGD+NS +G   M+KP NN L++Q V MQS KK + SQ GKGSI+  V
Sbjct: 106 LLKTTEFSSGQCNGDSNSSAGRLSMTKPENNDLYNQGVLMQSKKKCTSSQIGKGSIVPLV 165

Query: 228 PNVSPNGRNRNISLGKVNSVLKTSQFTEAANGISKGVAVEEFSKVIVNGSGTKMME 284
           P+VS NGRN++ SLGKVNSV KT +FTEAANG+   VAVE+ SK I+NGSGTK+ME
Sbjct: 166 PDVSLNGRNQSTSLGKVNSVPKTLKFTEAANGMEGSVAVEKMSKRIINGSGTKVME 209

[Close]

BLAST of Cp4.1LG00g00060 vs. NCBI nr
Match: gi|778676130|ref|XP_004152920.2| (PREDICTED: DNA polymerase I B, chloroplastic/mitochondrial [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 1.9e-25
Identity = 117/325 (36.00%), Postives = 143/325 (44.00%), Query Frame = 1


Query: 47  ITLGASTSQASSLISQWPSYFFLWRSNYVSNSSISICASSKRLYR----HLLEV------ 106
           +TLG STSQASS  + WPS FFLWRS  V NSSISICASSK L R     L  V      
Sbjct: 1   MTLGISTSQASSFRTHWPSCFFLWRSTSVPNSSISICASSKALCRTEFASLKSVGGALPN 60

Query: 107 --------------FLTETA----KQHDKERAFLSDVNDWSKSTRQLKQEKL-FRFSETE 166
                         F T T+    KQ+ KER  L    DW   T QL Q+K  F+   T 
Sbjct: 61  MNVIHASFQFRQCSFSTTTSFYETKQYGKERP-LHGAGDWVNETYQLIQKKTTFKSMRTG 120

Query: 167 ILTKNDEEKLRKKENLIDYGTLHCYNSLSPPYSKVQSNLGNG-----------NGDTNSY 226
           ILT NDE KLRKKENL DYGT HC N+L PPYSKV SNL +            N  TN  
Sbjct: 121 ILTDNDEVKLRKKENLTDYGTSHCSNNLRPPYSKVSSNLRSKRSNASNVSDYVNSSTNIL 180

Query: 227 SGEWPMSKPANNVLHSQVV---------PMQSNKKYSVSQ-NGKGSIMRHVPNVSPNGRN 284
           S E+   +P N+     VV         P+    ++S  Q NG  +      +++    N
Sbjct: 181 SDEFRKQEPINSERTKNVVTINRMENKAPLLKTTEFSSGQCNGDSNSSAGRLSMTKPENN 240

[Close]

BLAST of Cp4.1LG00g00060 vs. NCBI nr
Match: gi|659126978|ref|XP_008463457.1| (PREDICTED: uncharacterized protein LOC103501625 [Cucumis melo])

HSP 1 Score: 120.6 bits (301), Expect = 4.7e-24
Identity = 72/143 (50.35%), Postives = 94/143 (65.73%), Query Frame = 1


Query: 141 KNDEEKLRKKENLIDYGTLHCYNSLSPPYSKVQSNLGNGNGDTNSYSGEWPMSKPANNVL 200
           K +    ++ EN++   T+    S +P     + + G  NGD NS +G   M+KP NN L
Sbjct: 186 KQEPINSKRTENVV---TMDRMESRAPLLKTTEVSSGQCNGDINSSAGRRSMTKPENNYL 245

Query: 201 HSQVVPMQSNKKYSVSQNGKGSIMRHVPNVSPNGRNRNISLGKVNSVLKTSQFTEAANGI 260
           H+Q V  QS KK + SQ  KGSI+  VP+VSPNGRN++ISLGK +SVLKT +FTEAANGI
Sbjct: 246 HNQDVLTQSKKKCTSSQIRKGSIVPRVPDVSPNGRNQSISLGKADSVLKTLRFTEAANGI 305

Query: 261 SKGVAVEEFSKVIVNGSGTKMME 284
              V VE+ SK I+NGSGTK+ E
Sbjct: 306 KGSVDVEKLSKGIINGSGTKVTE 325

[Close]

BLAST of Cp4.1LG00g00060 vs. NCBI nr
Match: gi|700201009|gb|KGN56142.1| (hypothetical protein Csa_3G078000 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 1.4e-23
Identity = 78/176 (44.32%), Postives = 113/176 (64.20%), Query Frame = 1


Query: 108 ERAFLSDVNDWSKSTRQLKQEKLFRFSETEILTKNDEEKLRKKENLIDYGTLHCYNSLSP 167
           +R+  S+V+D+  S+  +  ++ FR        K +     + +N++   T++   + +P
Sbjct: 46  KRSNASNVSDYVNSSTNILSDE-FR--------KQEPINSERTKNVV---TINRMENKAP 105

Query: 168 PYSKVQSNLGNGNGDTNSYSGEWPMSKPANNVLHSQVVPMQSNKKYSVSQNGKGSIMRHV 227
                + + G  NGD+NS +G   M+KP NN L++Q V MQS KK + SQ GKGSI+  V
Sbjct: 106 LLKTTEFSSGQCNGDSNSSAGRLSMTKPENNDLYNQGVLMQSKKKCTSSQIGKGSIVPLV 165

Query: 228 PNVSPNGRNRNISLGKVNSVLKTSQFTEAANGISKGVAVEEFSKVIVNGSGTKMME 284
           P+VS NGRN++ SLGKVNSV KT +FTEAANG+   VAVE+ SK I+NGSGTK+ME
Sbjct: 166 PDVSLNGRNQSTSLGKVNSVPKTLKFTEAANGMEGSVAVEKMSKRIINGSGTKVME 209

The following BLAST results are available for this feature:

BLAST of Cp4.1LG00g00060 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG00g00060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6C2_CUCSA	9.5e-24	44.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G078000 PE=4 SV=1	[more]

BLAST of Cp4.1LG00g00060 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG00g00060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778676130\|ref\|XP_004152920.2\|	1.9e-25	36.00	PREDICTED: DNA polymerase I B, chloroplastic/mitochondrial [Cucumis sativus]	[more]
gi\|659126978\|ref\|XP_008463457.1\|	4.7e-24	50.35	PREDICTED: uncharacterized protein LOC103501625 [Cucumis melo]	[more]
gi\|700201009\|gb\|KGN56142.1\|	1.4e-23	44.32	hypothetical protein Csa_3G078000 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006139	nucleobase-containing compound metabolic process
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0042575	DNA polymerase complex
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG00g00060.1	Cp4.1LG00g00060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 281..289 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG00g00060	Cucsa.059830	Cucumber (Gy14) v1	cgycpeB0076
Cp4.1LG00g00060	CmaCh04G009540	Cucurbita maxima (Rimu)	cmacpeB692
Cp4.1LG00g00060	CmoCh04G010250	Cucurbita moschata (Rifu)	cmocpeB644
Cp4.1LG00g00060	CmoCh16G009030	Cucurbita moschata (Rifu)	cmocpeB301
Cp4.1LG00g00060	Cla005295	Watermelon (97103) v1	cpewmB002
Cp4.1LG00g00060	MELO3C025395	Melon (DHL92) v3.5.1	cpemeB011
Cp4.1LG00g00060	ClCG10G005550	Watermelon (Charleston Gray)	cpewcgB001
Cp4.1LG00g00060	CSPI03G05260	Wild cucumber (PI 183967)	cpecpiB007
Cp4.1LG00g00060	Lsi05G006130	Bottle gourd (USVL1VR-Ls)	cpelsiB014
Cp4.1LG00g00060	MELO3C025395.2	Melon (DHL92) v3.6.1	cpemedB013
Cp4.1LG00g00060	CsaV3_3G005270	Cucumber (Chinese Long) v3	cpecucB0011
Cp4.1LG00g00060	Bhi11G000497	Wax gourd	cpewgoB0000
Cp4.1LG00g00060	CsGy3G005340	Cucumber (Gy14) v2	cgybcpeB280
Cp4.1LG00g00060	Carg24813	Silver-seed gourd	carcpeB1109
Cp4.1LG00g00060	Carg00067	Silver-seed gourd	carcpeB0933

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG00g00060	Cp4.1LG01g08050	Cucurbita pepo (Zucchini)	cpecpeB007

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG00g00060	Cucurbita maxima (Rimu)	cmacpeB337
Cp4.1LG00g00060	Cucumber (Chinese Long) v2	cpecuB009