CmoCh20G011190 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh20G011190
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Retrotransposon protein, putative, Ty3-gypsy subclass
Location	Cmo_Chr20 : 10676309 .. 10678249 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGTGACAGATATGGACGTAGTTAAGAATTTAGACCCTGGTACATCCAATGTGGACTTGGGAAATGAGGGGCAGCCTGTAGAGGAAATTGCTCCAGCGGAGGCGGTTCCGGAGCCTGCTGCTCAGTCGGCATCCAGAGATCAGCCGACTGTTGTGATTACTTTGGAAGCATTACAATCATTGATTGAGAGTCGAGTAGATCAGGCAATGCAGAGCCGGGTGGATCAAGCGGTTCAGGCAGCCCTTGTTGGTCTTGGAAGCCAGGCGGCTCCAACAGTACCTGTATCGGGCCAGACGACATTGGTGTCTGAAGCACCAGGAGTAGGTGTTCAGACAGTAATACCTCCAACACGGTTGACAGAACTACCTGGTACAGCTGTGGTGACAGAGGCACCATCGCGGGTAGTAACTTATGGCCGACGATGTATGACAGAAGAGAGTGAGTACATACGAGATTTCATGAAACTTGGCCCGCCAACTTTTGGAGGAAAGGGGACTGATCCGGAGGCAGCTGAATGGTGGTTGGAATGTGTTGAAACAAAATTTACATTCTACAACTGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCTGTAGTGAATGAATTCCTGGATGTTTTTCCTGATAAATTACCTGGTTTACCACCAGAGCGGGAAGTCAACTTTGGTATTGAACTAGAACCAAGGACAACACCTATCTCTAAAGCTTCTTATAGGATGGCTCCCGCGGAATTGAAAGAGTTGAAGTTGCAATTACAGGAATTGTTGAACCAGGGATTCATACGACCTAGTGTGTCACCATGGGGAGCTCCAGTGTTGTTTGTGAAAAAGAAGGATGGCACACTTCGTCTCTGCATTGACTATAGGGAGCTGAATAAGGTGACCATAAAAAATAAGTATCCCTTGCCACGAATTGATGACTTATTTGACCAGCTTCAAGGGGCAGCGGTATTTTCGAAGATTGATCTTCGTTCTGGTTATCACCAGATAAGAGTCAAAGAAGATGACGTACCGAAGACAGCTTTTCGTACTCGGTATGGGCATTATGAATTTGTCGTGATGTCTTTTGGCTTGACTAATGCCCCTGCAGTGTTTATGGAGCTGATGAATCGGGTATTCCAGGATTTTCTGGATTCTTTTGTCATTGTGTTCATTGATGATATCTTGGTTTATTCCAAGACAAACGATGAACATGCAGAACATTTGAGGAAAGTTTTGTGGGTTCTACGTAAACAAAGATTATATGCCAAGTTCTCAAAATGCGAGTTTTGGCTTCAAAAGGTAGTATTCCTTGGTCATGTGGTATCCAAGGATGGTATAACTGTTGATCCAGCAAAGGTGGAGGCAGTTATAGGTTGGGTTCGACCAACTACAATTACTGAGGTGAGAAGTTTTCTGGGTTTAGCCGGATATTACAGGTGCTTTATTAAAGACTTTGCAAGGATTGCTGCACCACTGACTCAGTTAACCCGAAAAGGTAAGAAATTTGATTGGAGTCGAGCTTGTGAAAGTAGTTTTCAGGAACTCAAGGAAAGATTAGCGTCAGCCCCAGTGCTTATTGTACCTGACGGTACTGGGAACTTAGTAATTTATAGTGATGCTTCTAAGCATGGGTTGGGGTGCGTACTTATGCAAAACGGGAGAGTTATTGCTTATGCCTCTCGGCAATTAAAGGATTATGAACGCAATTACCCAACTCATGATTTAGAATTAGCTGCTGTGGTGTTTGCTCTGAAGATATGGAGACATTATCTGTACGGTGAGAGGATACAAGTATATACGGATCATAAGCTTTAG

mRNA sequence

ATGTATGTGACAGATATGGACGTAGTTAAGAATTTAGACCCTGGTACATCCAATGTGGACTTGGGAAATGAGGGGCAGCCTGTAGAGGAAATTGCTCCAGCGGAGGCGGTTCCGGAGCCTGCTGCTCAGTCGGCATCCAGAGATCAGCCGACTGTTGTGATTACTTTGGAAGCATTACAATCATTGATTGAGAGTCGAGTAGATCAGGCAATGCAGAGCCGGGTGGATCAAGCGGTTCAGGCAGCCCTTGTTGGTCTTGGAAGCCAGGCGGCTCCAACAGTACCTGTATCGGGCCAGACGACATTGGTGTCTGAAGCACCAGGAGTAGGTGTTCAGACAGTAATACCTCCAACACGGTTGACAGAACTACCTGGTACAGCTGTGGTGACAGAGGCACCATCGCGGGTAGTAACTTATGGCCGACGATGTATGACAGAAGAGAGTGAGTACATACGAGATTTCATGAAACTTGGCCCGCCAACTTTTGGAGGAAAGGGGACTGATCCGGAGGCAGCTGAATGGTGGTTGGAATGTGTTGAAACAAAATTTACATTCTACAACTGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCTGTAGTGAATGAATTCCTGGATGTTTTTCCTGATAAATTACCTGGTTTACCACCAGAGCGGGAAGTCAACTTTGGTATTGAACTAGAACCAAGGACAACACCTATCTCTAAAGCTTCTTATAGGATGGCTCCCGCGGAATTGAAAGAGTTGAAGTTGCAATTACAGGAATTGTTGAACCAGGGATTCATACGACCTAGTGTGTCACCATGGGGAGCTCCAGTGTTGTTTGTGAAAAAGAAGGATGGCACACTTCGTCTCTGCATTGACTATAGGGAGCTGAATAAGGTGACCATAAAAAATAAGTATCCCTTGCCACGAATTGATGACTTATTTGACCAGCTTCAAGGGGCAGCGGTATTTTCGAAGATTGATCTTCGTTCTGGTTATCACCAGATAAGAGTCAAAGAAGATGACGTACCGAAGACAGCTTTTCGTACTCGGTATGGGCATTATGAATTTGTCGTGATGTCTTTTGGCTTGACTAATGCCCCTGCAGTGTTTATGGAGCTGATGAATCGGGTATTCCAGGATTTTCTGGATTCTTTTGTCATTGTGTTCATTGATGATATCTTGGTTTATTCCAAGACAAACGATGAACATGCAGAACATTTGAGGAAAGTTTTGTGGGTTCTACGTAAACAAAGATTATATGCCAAGTTCTCAAAATGCGAGTTTTGGCTTCAAAAGGTAGTATTCCTTGGTCATGTGGTATCCAAGGATGGTATAACTGTTGATCCAGCAAAGGTGGAGGCAGTTATAGGTTGGGTTCGACCAACTACAATTACTGAGGTGAGAAGTTTTCTGGGTTTAGCCGGATATTACAGGTGCTTTATTAAAGACTTTGCAAGGATTGCTGCACCACTGACTCAGTTAACCCGAAAAGGTAAGAAATTTGATTGGAGTCGAGCTTGTGAAAGTAGTTTTCAGGAACTCAAGGAAAGATTAGCGTCAGCCCCAGTGCTTATTGTACCTGACGGTACTGGGAACTTAGTAATTTATAGTGATGCTTCTAAGCATGGGTTGGGGTGCGTACTTATGCAAAACGGGAGAGTTATTGCTTATGCCTCTCGGCAATTAAAGGATTATGAACGCAATTACCCAACTCATGATTTAGAATTAGCTGCTGTGGTGTTTGCTCTGAAGATATGGAGACATTATCTGTACGGTGAGAGGATACAAGTATATACGGATCATAAGCTTTAG

Coding sequence (CDS)

ATGTATGTGACAGATATGGACGTAGTTAAGAATTTAGACCCTGGTACATCCAATGTGGACTTGGGAAATGAGGGGCAGCCTGTAGAGGAAATTGCTCCAGCGGAGGCGGTTCCGGAGCCTGCTGCTCAGTCGGCATCCAGAGATCAGCCGACTGTTGTGATTACTTTGGAAGCATTACAATCATTGATTGAGAGTCGAGTAGATCAGGCAATGCAGAGCCGGGTGGATCAAGCGGTTCAGGCAGCCCTTGTTGGTCTTGGAAGCCAGGCGGCTCCAACAGTACCTGTATCGGGCCAGACGACATTGGTGTCTGAAGCACCAGGAGTAGGTGTTCAGACAGTAATACCTCCAACACGGTTGACAGAACTACCTGGTACAGCTGTGGTGACAGAGGCACCATCGCGGGTAGTAACTTATGGCCGACGATGTATGACAGAAGAGAGTGAGTACATACGAGATTTCATGAAACTTGGCCCGCCAACTTTTGGAGGAAAGGGGACTGATCCGGAGGCAGCTGAATGGTGGTTGGAATGTGTTGAAACAAAATTTACATTCTACAACTGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCTGTAGTGAATGAATTCCTGGATGTTTTTCCTGATAAATTACCTGGTTTACCACCAGAGCGGGAAGTCAACTTTGGTATTGAACTAGAACCAAGGACAACACCTATCTCTAAAGCTTCTTATAGGATGGCTCCCGCGGAATTGAAAGAGTTGAAGTTGCAATTACAGGAATTGTTGAACCAGGGATTCATACGACCTAGTGTGTCACCATGGGGAGCTCCAGTGTTGTTTGTGAAAAAGAAGGATGGCACACTTCGTCTCTGCATTGACTATAGGGAGCTGAATAAGGTGACCATAAAAAATAAGTATCCCTTGCCACGAATTGATGACTTATTTGACCAGCTTCAAGGGGCAGCGGTATTTTCGAAGATTGATCTTCGTTCTGGTTATCACCAGATAAGAGTCAAAGAAGATGACGTACCGAAGACAGCTTTTCGTACTCGGTATGGGCATTATGAATTTGTCGTGATGTCTTTTGGCTTGACTAATGCCCCTGCAGTGTTTATGGAGCTGATGAATCGGGTATTCCAGGATTTTCTGGATTCTTTTGTCATTGTGTTCATTGATGATATCTTGGTTTATTCCAAGACAAACGATGAACATGCAGAACATTTGAGGAAAGTTTTGTGGGTTCTACGTAAACAAAGATTATATGCCAAGTTCTCAAAATGCGAGTTTTGGCTTCAAAAGGTAGTATTCCTTGGTCATGTGGTATCCAAGGATGGTATAACTGTTGATCCAGCAAAGGTGGAGGCAGTTATAGGTTGGGTTCGACCAACTACAATTACTGAGGTGAGAAGTTTTCTGGGTTTAGCCGGATATTACAGGTGCTTTATTAAAGACTTTGCAAGGATTGCTGCACCACTGACTCAGTTAACCCGAAAAGGTAAGAAATTTGATTGGAGTCGAGCTTGTGAAAGTAGTTTTCAGGAACTCAAGGAAAGATTAGCGTCAGCCCCAGTGCTTATTGTACCTGACGGTACTGGGAACTTAGTAATTTATAGTGATGCTTCTAAGCATGGGTTGGGGTGCGTACTTATGCAAAACGGGAGAGTTATTGCTTATGCCTCTCGGCAATTAAAGGATTATGAACGCAATTACCCAACTCATGATTTAGAATTAGCTGCTGTGGTGTTTGCTCTGAAGATATGGAGACATTATCTGTACGGTGAGAGGATACAAGTATATACGGATCATAAGCTTTAG

Homology

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BLAST of CmoCh20G011190 vs. Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.7e-82
Identity = 156/370 (42.16%), Postives = 234/370 (63.24%), Query Frame = 1


Query: 282 SKASYRMAPAELKELKLQLQELLNQGFIRPSVSPWGAPVLFVKKKDGT-----LRLCIDY 341
           SK SY  A  +  E++ Q+Q++LNQG IR S SP+ +P+  V KK         R+ IDY
Sbjct: 211 SKYSYPQAYEQ--EVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDY 270

Query: 342 RELNKVTIKNKYPLPRIDDLFDQLQGAAVFSKIDLRSGYHQIRVKEDDVPKTAFRTRYGH 401
           R+LN++T+ +++P+P +D++  +L     F+ IDL  G+HQI +  + V KTAF T++GH
Sbjct: 271 RKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGH 330

Query: 402 YEFVVMSFGLTNAPAVFMELMNRVFQDFLDSFVIVFIDDILVYSKTNDEHAEHLRKVLWV 461
           YE++ M FGL NAPA F   MN + +  L+   +V++DDI+V+S + DEH + L  V   
Sbjct: 331 YEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEK 390

Query: 462 LRKQRLYAKFSKCEFWLQKVVFLGHVVSKDGITVDPAKVEAVIGWVRPTTITEVRSFLGL 521
           L K  L  +  KCEF  Q+  FLGHV++ DGI  +P K+EA+  +  PT   E+++FLGL
Sbjct: 391 LAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGL 450

Query: 522 AGYYRCFIKDFARIAAPLTQLTRKGKKFDWSR-ACESSFQELKERLASAPVLIVPDGTGN 581
            GYYR FI +FA IA P+T+  +K  K D +    +S+F++LK  ++  P+L VPD T  
Sbjct: 451 TGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKK 510

Query: 582 LVIYSDASKHGLGCVLMQNGRVIAYASRQLKDYERNYPTHDLELAAVVFALKIWRHYLYG 641
             + +DAS   LG VL Q+G  ++Y SR L ++E NY T + EL A+V+A K +RHYL G
Sbjct: 511 FTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLG 570

Query: 642 ERIQVYTDHK 646
              ++ +DH+
Sbjct: 571 RHFEISSDHQ 578

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BLAST of CmoCh20G011190 vs. Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.6e-80
Identity = 152/373 (40.75%), Postives = 227/373 (60.86%), Query Frame = 1


Query: 279 TPISKASYRMAPAELKELKLQLQELLNQGFIRPSVSPWGAPVLFVKKKDGT-----LRLC 338
           +PI    Y +A     E++ Q+QE+LNQG IR S SP+ +P   V KK         R+ 
Sbjct: 205 SPIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVV 264

Query: 339 IDYRELNKVTIKNKYPLPRIDDLFDQLQGAAVFSKIDLRSGYHQIRVKEDDVPKTAFRTR 398
           IDYR+LN++TI ++YP+P +D++  +L     F+ IDL  G+HQI + E+ + KTAF T+
Sbjct: 265 IDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTK 324

Query: 399 YGHYEFVVMSFGLTNAPAVFMELMNRVFQDFLDSFVIVFIDDILVYSKTNDEHAEHLRKV 458
            GHYE++ M FGL NAPA F   MN + +  L+   +V++DDI+++S +  EH   ++ V
Sbjct: 325 SGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLV 384

Query: 459 LWVLRKQRLYAKFSKCEFWLQKVVFLGHVVSKDGITVDPAKVEAVIGWVRPTTITEVRSF 518
              L    L  +  KCEF  ++  FLGH+V+ DGI  +P KV+A++ +  PT   E+R+F
Sbjct: 385 FTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAF 444

Query: 519 LGLAGYYRCFIKDFARIAAPLTQLTRKGKKFDWSR-ACESSFQELKERLASAPVLIVPDG 578
           LGL GYYR FI ++A IA P+T   +K  K D  +     +F++LK  +   P+L +PD 
Sbjct: 445 LGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDF 504

Query: 579 TGNLVIYSDASKHGLGCVLMQNGRVIAYASRQLKDYERNYPTHDLELAAVVFALKIWRHY 638
               V+ +DAS   LG VL QNG  I++ SR L D+E NY   + EL A+V+A K +RHY
Sbjct: 505 EKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHY 564

Query: 639 LYGERIQVYTDHK 646
           L G +  + +DH+
Sbjct: 565 LLGRQFLIASDHQ 577

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BLAST of CmoCh20G011190 vs. Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.4e-73
Identity = 162/420 (38.57%), Postives = 231/420 (55.00%), Query Frame = 1


Query: 247 VVNEFLDVFPDKLPGLPPEREVNFGIELEPRTTPISKASYRMAPAELKELKLQLQELLNQ 306
           ++ EF  +F   L G+  E  V   I    +  PI   SY        E++ Q+ ELL  
Sbjct: 91  LLGEFPRIFEPPLSGMSVETAVKAEIRTNTQD-PIYAKSYPYPVNMRGEVERQIDELLQD 150

Query: 307 GFIRPSVSPWGAPVLFVKKK-----DGTLRLCIDYRELNKVTIKNKYPLPRIDDLFDQLQ 366
           G IRPS SP+ +P+  V KK     +   R+ +D++ LN VTI + YP+P I+     L 
Sbjct: 151 GIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINATLASLG 210

Query: 367 GAAVFSKIDLRSGYHQIRVKEDDVPKTAFRTRYGHYEFVVMSFGLTNAPAVFMELMNRVF 426
            A  F+ +DL SG+HQI +KE D+PKTAF T  G YEF+ + FGL NAPA+F  +++ + 
Sbjct: 211 NAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDIL 270

Query: 427 QDFLDSFVIVFIDDILVYSKTNDEHAEHLRKVLWVLRKQRLYAKFSKCEFWLQKVVFLGH 486
           ++ +     V+IDDI+V+S+  D H ++LR VL  L K  L     K  F   +V FLG+
Sbjct: 271 REHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGY 330

Query: 487 VVSKDGITVDPAKVEAVIGWVRPTTITEVRSFLGLAGYYRCFIKDFARIAAPLTQLTR-- 546
           +V+ DGI  DP KV A+     PT++ E++ FLG+  YYR FI+D+A++A PLT LTR  
Sbjct: 331 IVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGL 390

Query: 547 ---------KGKKFDWSRACESSFQELKERLASAPVLIVPDGTGNLVIYSDASKHGLGCV 606
                                 SF +LK  L S+ +L  P  T    + +DAS   +G V
Sbjct: 391 YANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAV 450

Query: 607 LMQN----GRVIAYASRQLKDYERNYPTHDLELAAVVFALKIWRHYLYGE-RIQVYTDHK 646
           L Q+     R IAY SR L   E NY T + E+ A++++L   R YLYG   I+VYTDH+
Sbjct: 451 LSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQ 509

[Close]

BLAST of CmoCh20G011190 vs. Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 271.6 bits (693), Expect = 2.3e-71
Identity = 149/404 (36.88%), Postives = 230/404 (56.93%), Query Frame = 1


Query: 250 EFLDVFPDKLPGLPPERE---VNFGIELEPRTTPISKASYRMAPAELKELKLQLQELLNQ 309
           ++ ++  + LP  P +     V   IE++P         Y +     +E+   +Q+LL+ 
Sbjct: 563 KYREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDN 622

Query: 310 GFIRPSVSPWGAPVLFVKKKDGTLRLCIDYRELNKVTIKNKYPLPRIDDLFDQLQGAAVF 369
            FI PS SP  +PV+ V KKDGT RLC+DYR LNK TI + +PLPRID+L  ++  A +F
Sbjct: 623 KFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIF 682

Query: 370 SKIDLRSGYHQIRVKEDDVPKTAFRTRYGHYEFVVMSFGLTNAPAVFMELMNRVFQDFLD 429
           + +DL SGYHQI ++  D  KTAF T  G YE+ VM FGL NAP+ F   M   F+D   
Sbjct: 683 TTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL-- 742

Query: 430 SFVIVFIDDILVYSKTNDEHAEHLRKVLWVLRKQRLYAKFSKCEFWLQKVVFLGHVVSKD 489
            FV V++DDIL++S++ +EH +HL  VL  L+ + L  K  KC+F  ++  FLG+ +   
Sbjct: 743 RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQ 802

Query: 490 GITVDPAKVEAVIGWVRPTTITEVRSFLGLAGYYRCFIKDFARIAAPLTQLTRKGKKFDW 549
            I     K  A+  +  P T+ + + FLG+  YYR FI + ++IA P+        K  W
Sbjct: 803 KIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFI--CDKSQW 862

Query: 550 SRACESSFQELKERLASAPVLIVPDGTGNLVIYSDASKHGLGCVLMQNGR------VIAY 609
           +   + +  +LK+ L ++PVL+  +   N  + +DASK G+G VL +         V+ Y
Sbjct: 863 TEKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGY 922

Query: 610 ASRQLKDYERNYPTHDLELAAVVFALKIWRHYLYGERIQVYTDH 645
            S+ L+  ++NYP  +LEL  ++ AL  +R+ L+G+   + TDH
Sbjct: 923 FSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDH 962

[Close]

BLAST of CmoCh20G011190 vs. Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 271.2 bits (692), Expect = 3.0e-71
Identity = 149/404 (36.88%), Postives = 230/404 (56.93%), Query Frame = 1


Query: 250 EFLDVFPDKLPGLPPERE---VNFGIELEPRTTPISKASYRMAPAELKELKLQLQELLNQ 309
           ++ ++  + LP  P +     V   IE++P         Y +     +E+   +Q+LL+ 
Sbjct: 589 KYREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDN 648

Query: 310 GFIRPSVSPWGAPVLFVKKKDGTLRLCIDYRELNKVTIKNKYPLPRIDDLFDQLQGAAVF 369
            FI PS SP  +PV+ V KKDGT RLC+DYR LNK TI + +PLPRID+L  ++  A +F
Sbjct: 649 KFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIF 708

Query: 370 SKIDLRSGYHQIRVKEDDVPKTAFRTRYGHYEFVVMSFGLTNAPAVFMELMNRVFQDFLD 429
           + +DL SGYHQI ++  D  KTAF T  G YE+ VM FGL NAP+ F   M   F+D   
Sbjct: 709 TTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL-- 768

Query: 430 SFVIVFIDDILVYSKTNDEHAEHLRKVLWVLRKQRLYAKFSKCEFWLQKVVFLGHVVSKD 489
            FV V++DDIL++S++ +EH +HL  VL  L+ + L  K  KC+F  ++  FLG+ +   
Sbjct: 769 RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQ 828

Query: 490 GITVDPAKVEAVIGWVRPTTITEVRSFLGLAGYYRCFIKDFARIAAPLTQLTRKGKKFDW 549
            I     K  A+  +  P T+ + + FLG+  YYR FI + ++IA P+        K  W
Sbjct: 829 KIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFI--CDKSQW 888

Query: 550 SRACESSFQELKERLASAPVLIVPDGTGNLVIYSDASKHGLGCVLMQNGR------VIAY 609
           +   + + ++LK  L ++PVL+  +   N  + +DASK G+G VL +         V+ Y
Sbjct: 889 TEKQDKAIEKLKAALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGY 948

Query: 610 ASRQLKDYERNYPTHDLELAAVVFALKIWRHYLYGERIQVYTDH 645
            S+ L+  ++NYP  +LEL  ++ AL  +R+ L+G+   + TDH
Sbjct: 949 FSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDH 988

[Close]

BLAST of CmoCh20G011190 vs. TrEMBL
Match: M5WLY8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021229mg PE=4 SV=1)

HSP 1 Score: 635.6 bits (1638), Expect = 6.7e-179
Identity = 297/400 (74.25%), Postives = 348/400 (87.00%), Query Frame = 1


Query: 246 PVVNEFLDVFPDKLPGLPPEREVNFGIELEPRTTPISKASYRMAPAELKELKLQLQELLN 305
           PV+ +F DVFP+ LPGLPP RE+ F IEL P T PIS+A YRMAPAEL+ELK QLQEL++
Sbjct: 231 PVIQDFPDVFPEDLPGLPPHREIEFVIELAPGTNPISQAPYRMAPAELRELKTQLQELVD 290

Query: 306 QGFIRPSVSPWGAPVLFVKKKDGTLRLCIDYRELNKVTIKNKYPLPRIDDLFDQLQGAAV 365
           +GFIRPS SPWGAPVLFVKKKDGT+RLC+DYR+LNK+T++N+YPLPRIDDLFDQL+GA V
Sbjct: 291 KGFIRPSFSPWGAPVLFVKKKDGTMRLCVDYRQLNKITVRNRYPLPRIDDLFDQLKGAKV 350

Query: 366 FSKIDLRSGYHQIRVKEDDVPKTAFRTRYGHYEFVVMSFGLTNAPAVFMELMNRVFQDFL 425
           FSKIDLRSGYHQ+RV+E+D+PKTAFRTRYGHYEF+VM FGLTNAPA FM+LMNRVF+ +L
Sbjct: 351 FSKIDLRSGYHQLRVREEDMPKTAFRTRYGHYEFLVMPFGLTNAPAAFMDLMNRVFRRYL 410

Query: 426 DSFVIVFIDDILVYSKTNDEHAEHLRKVLWVLRKQRLYAKFSKCEFWLQKVVFLGHVVSK 485
           D FVIVFIDDILVYSK+   H +HL  VL  LR+++LYAKFSKC+FWL +V FLGHV+S 
Sbjct: 411 DRFVIVFIDDILVYSKSQKAHMKHLNLVLRTLRRRQLYAKFSKCQFWLDRVSFLGHVISA 470

Query: 486 DGITVDPAKVEAVIGWVRPTTITEVRSFLGLAGYYRCFIKDFARIAAPLTQLTRKGKKFD 545
           +GI VDP K+EAV+ W+RPT++TE+RSFLGLAGYYR F++ F+ IAAPLT LTRKG KF 
Sbjct: 471 EGIYVDPQKIEAVVNWLRPTSVTEIRSFLGLAGYYRRFVEGFSTIAAPLTYLTRKGVKFV 530

Query: 546 WSRACESSFQELKERLASAPVLIVPDGTGNLVIYSDASKHGLGCVLMQNGRVIAYASRQL 605
           WS  CE SF ELK RL +APVL +PD +GN VIYSDAS+ GLGCVLMQ+GRVIAYASRQL
Sbjct: 531 WSDKCEESFIELKTRLTTAPVLALPDDSGNFVIYSDASQQGLGCVLMQHGRVIAYASRQL 590

Query: 606 KDYERNYPTHDLELAAVVFALKIWRHYLYGERIQVYTDHK 646
           K +E NYP HDLELAAVVFALKIWRHYLYGE  Q++TDHK
Sbjct: 591 KKHELNYPVHDLELAAVVFALKIWRHYLYGETCQIFTDHK 630

[Close]

BLAST of CmoCh20G011190 vs. TrEMBL
Match: A0A061E6T4_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1)

HSP 1 Score: 630.9 bits (1626), Expect = 1.7e-177
Identity = 297/399 (74.44%), Postives = 345/399 (86.47%), Query Frame = 1


Query: 247 VVNEFLDVFPDKLPGLPPEREVNFGIELEPRTTPISKASYRMAPAELKELKLQLQELLNQ 306
           +V+EF DVFPD LPGLPP+RE+ F I+L P T PIS   YRMAP ELKELK+QLQEL+++
Sbjct: 544 IVSEFPDVFPDDLPGLPPDRELEFPIDLLPGTAPISIPPYRMAPTELKELKVQLQELVDK 603

Query: 307 GFIRPSVSPWGAPVLFVKKKDGTLRLCIDYRELNKVTIKNKYPLPRIDDLFDQLQGAAVF 366
           GFIRPS+SPWGAP+LFVKKKDGTLRLCID R+LN++TIKNKYPLPRIDDLFDQLQGA VF
Sbjct: 604 GFIRPSISPWGAPILFVKKKDGTLRLCIDCRQLNRMTIKNKYPLPRIDDLFDQLQGATVF 663

Query: 367 SKIDLRSGYHQIRVKEDDVPKTAFRTRYGHYEFVVMSFGLTNAPAVFMELMNRVFQDFLD 426
           SK+DLRSGYHQ+R+KE DVPKTAFRTRYGHYEF+VM FGLTNAPA FM+LMNRVF  +LD
Sbjct: 664 SKVDLRSGYHQLRIKEQDVPKTAFRTRYGHYEFLVMPFGLTNAPAAFMDLMNRVFHPYLD 723

Query: 427 SFVIVFIDDILVYSKTNDEHAEHLRKVLWVLRKQRLYAKFSKCEFWLQKVVFLGHVVSKD 486
            FVIVFIDDILVYS+ NDEHA HLR VL  LR+++LYAKFSKCEFWLQ+VVFLGH+VS+ 
Sbjct: 724 KFVIVFIDDILVYSRDNDEHAAHLRIVLQTLRERQLYAKFSKCEFWLQEVVFLGHIVSRT 783

Query: 487 GITVDPAKVEAVIGWVRPTTITEVRSFLGLAGYYRCFIKDFARIAAPLTQLTRKGKKFDW 546
           GI VDP KVEA++ W +P T+TE+RSFLGLAGYYR F++ F+ +AAPLT+LTRKG KF W
Sbjct: 784 GIYVDPKKVEAILQWEQPKTVTEIRSFLGLAGYYRRFVQGFSLVAAPLTRLTRKGVKFVW 843

Query: 547 SRACESSFQELKERLASAPVLIVPDGTGNLVIYSDASKHGLGCVLMQNGRVIAYASRQLK 606
              CE+ FQELK RL SAPVL +P      ++YSDASK GLGCVLMQ+ +V+AYASRQLK
Sbjct: 844 DDVCENRFQELKNRLTSAPVLTLPVNGKGFIVYSDASKLGLGCVLMQDEKVVAYASRQLK 903

Query: 607 DYERNYPTHDLELAAVVFALKIWRHYLYGERIQVYTDHK 646
            +E NYPTHDLELAAVVFALKIWRHYLYGE  +++TDHK
Sbjct: 904 RHEANYPTHDLELAAVVFALKIWRHYLYGEHCRIFTDHK 942

[Close]

BLAST of CmoCh20G011190 vs. TrEMBL
Match: A0A061FHZ8_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_033345 PE=4 SV=1)

HSP 1 Score: 629.0 bits (1621), Expect = 6.3e-177
Identity = 292/399 (73.18%), Postives = 349/399 (87.47%), Query Frame = 1


Query: 247  VVNEFLDVFPDKLPGLPPEREVNFGIELEPRTTPISKASYRMAPAELKELKLQLQELLNQ 306
            VV EF+DVFP++LPGLPPERE+ F I+L P T PIS   YRMAPAELKELK QL++LL++
Sbjct: 605  VVKEFVDVFPEELPGLPPEREIEFCIDLIPDTRPISIPPYRMAPAELKELKDQLEDLLDK 664

Query: 307  GFIRPSVSPWGAPVLFVKKKDGTLRLCIDYRELNKVTIKNKYPLPRIDDLFDQLQGAAVF 366
            GFIRPSVSPWGAPVLFVKKKDG+LRLCIDYR+LNKVT+KNKYPLPRIDDLFDQLQGA  F
Sbjct: 665  GFIRPSVSPWGAPVLFVKKKDGSLRLCIDYRQLNKVTVKNKYPLPRIDDLFDQLQGAQCF 724

Query: 367  SKIDLRSGYHQIRVKEDDVPKTAFRTRYGHYEFVVMSFGLTNAPAVFMELMNRVFQDFLD 426
            SKIDLRSGYHQ+R++ +D+PK AF+TRYGHYEF+VMSFGLTNAPA FM+LMNRVF+ +LD
Sbjct: 725  SKIDLRSGYHQLRIRNEDIPKIAFQTRYGHYEFLVMSFGLTNAPAAFMDLMNRVFKPYLD 784

Query: 427  SFVIVFIDDILVYSKTNDEHAEHLRKVLWVLRKQRLYAKFSKCEFWLQKVVFLGHVVSKD 486
             FV+VFIDDIL+YSK+ +EH +HL+ VL +LR+ RLYAKFSKCEFWL+ V FLGHVVSK+
Sbjct: 785  KFVVVFIDDILIYSKSREEHEQHLKIVLQILREHRLYAKFSKCEFWLESVAFLGHVVSKE 844

Query: 487  GITVDPAKVEAVIGWVRPTTITEVRSFLGLAGYYRCFIKDFARIAAPLTQLTRKGKKFDW 546
            GI VD  K+EAV  W RPT++TE+RSF+GLAGYYR F+KDF++I APLT+LTRK  KF+W
Sbjct: 845  GIQVDTKKIEAVEKWPRPTSVTEIRSFVGLAGYYRRFVKDFSKIVAPLTKLTRKDTKFEW 904

Query: 547  SRACESSFQELKERLASAPVLIVPDGTGNLVIYSDASKHGLGCVLMQNGRVIAYASRQLK 606
            S ACE+SF++LK  L +APVL +P GTG  +++ DAS  GLGCVLMQ+G+VIAYASRQLK
Sbjct: 905  SDACENSFEKLKACLTTAPVLSLPQGTGGYMVFCDASGVGLGCVLMQHGKVIAYASRQLK 964

Query: 607  DYERNYPTHDLELAAVVFALKIWRHYLYGERIQVYTDHK 646
             +E NYP HDLE+AA+VFALKIWRHYLYGE  ++YTDHK
Sbjct: 965  RHEHNYPIHDLEMAAIVFALKIWRHYLYGETCEIYTDHK 1003

[Close]

BLAST of CmoCh20G011190 vs. TrEMBL
Match: A0A061EEG7_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_018243 PE=4 SV=1)

HSP 1 Score: 628.6 bits (1620), Expect = 8.2e-177
Identity = 293/399 (73.43%), Postives = 349/399 (87.47%), Query Frame = 1


Query: 247 VVNEFLDVFPDKLPGLPPEREVNFGIELEPRTTPISKASYRMAPAELKELKLQLQELLNQ 306
           VV EF+DVFP++LP LPPEREV F I+L P T PIS   YRMAPAELKELK QL++LL++
Sbjct: 513 VVKEFVDVFPEELPSLPPEREVEFCIDLIPDTRPISIPPYRMAPAELKELKDQLEDLLDK 572

Query: 307 GFIRPSVSPWGAPVLFVKKKDGTLRLCIDYRELNKVTIKNKYPLPRIDDLFDQLQGAAVF 366
           GFIRPSVSPWGAPVLFVKKKDG+LRLCIDYR+LNKVT+KNKYPLPRIDDLFDQLQGA  F
Sbjct: 573 GFIRPSVSPWGAPVLFVKKKDGSLRLCIDYRQLNKVTVKNKYPLPRIDDLFDQLQGAQCF 632

Query: 367 SKIDLRSGYHQIRVKEDDVPKTAFRTRYGHYEFVVMSFGLTNAPAVFMELMNRVFQDFLD 426
           SKIDLRSGYHQ+R++ +D+PKTAFRTRYGHYEF+VMSFGLTNAPA FM+LMNRVF+ +LD
Sbjct: 633 SKIDLRSGYHQLRIRNEDIPKTAFRTRYGHYEFLVMSFGLTNAPAAFMDLMNRVFKPYLD 692

Query: 427 SFVIVFIDDILVYSKTNDEHAEHLRKVLWVLRKQRLYAKFSKCEFWLQKVVFLGHVVSKD 486
            FV+VFIDDIL+YSK+ +EH +HL+ VL +LR+ RLYAKFSKCEFWL+ V FLGHVVSK+
Sbjct: 693 KFVVVFIDDILIYSKSREEHEQHLKIVLQILREHRLYAKFSKCEFWLESVAFLGHVVSKE 752

Query: 487 GITVDPAKVEAVIGWVRPTTITEVRSFLGLAGYYRCFIKDFARIAAPLTQLTRKGKKFDW 546
           GI VD  K+EAV  W RPT+++E+RSF+GLAGYYR F+KDF++I APLT+LTRK  KF+W
Sbjct: 753 GIRVDTKKIEAVEKWPRPTSVSEIRSFVGLAGYYRRFVKDFSKIVAPLTKLTRKDTKFEW 812

Query: 547 SRACESSFQELKERLASAPVLIVPDGTGNLVIYSDASKHGLGCVLMQNGRVIAYASRQLK 606
           S ACE+SF++LK  L +APVL +P GTG   ++ DAS  GLGCVLMQ+G+VIAYASRQLK
Sbjct: 813 SDACENSFEKLKACLTTAPVLSLPQGTGGYTMFCDASGVGLGCVLMQHGKVIAYASRQLK 872

Query: 607 DYERNYPTHDLELAAVVFALKIWRHYLYGERIQVYTDHK 646
            +E+NYP HDLE+AA+VFALKIWRHYLYGE  ++YTDHK
Sbjct: 873 RHEQNYPIHDLEMAAIVFALKIWRHYLYGETCEIYTDHK 911

[Close]

BLAST of CmoCh20G011190 vs. TrEMBL
Match: A0A061DW51_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_003698 PE=4 SV=1)

HSP 1 Score: 625.9 bits (1613), Expect = 5.3e-176
Identity = 297/400 (74.25%), Postives = 344/400 (86.00%), Query Frame = 1


Query: 246 PVVNEFLDVFPDKLPGLPPEREVNFGIELEPRTTPISKASYRMAPAELKELKLQLQELLN 305
           P+V+EF DVFPD LPGLPP+RE+ F I+L P T PIS   YRMAPAELKELK+QLQEL++
Sbjct: 506 PIVSEFPDVFPDDLPGLPPDRELEFPIDLLPGTAPISIPPYRMAPAELKELKVQLQELVD 565

Query: 306 QGFIRPSVSPWGAPVLFVKKKDGTLRLCIDYRELNKVTIKNKYPLPRIDDLFDQLQGAAV 365
           +GFIRPS+SPWGAP+LFVKKKDGTLRLCIDYR+LN++TIKNKYPLPRIDD+FDQLQGA V
Sbjct: 566 KGFIRPSISPWGAPILFVKKKDGTLRLCIDYRQLNRMTIKNKYPLPRIDDIFDQLQGATV 625

Query: 366 FSKIDLRSGYHQIRVKEDDVPKTAFRTRYGHYEFVVMSFGLTNAPAVFMELMNRVFQDFL 425
           FSK++LRSGYHQ+R+KE DV KT FRTRYGHYEF+VM FGLTNAPA FM+LM+RVF  +L
Sbjct: 626 FSKVNLRSGYHQLRIKEQDVLKTEFRTRYGHYEFLVMPFGLTNAPATFMDLMSRVFHPYL 685

Query: 426 DSFVIVFIDDILVYSKTNDEHAEHLRKVLWVLRKQRLYAKFSKCEFWLQKVVFLGHVVSK 485
           D FVIVFIDDILVY + NDEHA HLR VL  LR+++LYAKFSKCEFWLQ+VVFLGHVVS+
Sbjct: 686 DKFVIVFIDDILVYLRDNDEHAAHLRIVLQTLRERQLYAKFSKCEFWLQEVVFLGHVVSR 745

Query: 486 DGITVDPAKVEAVIGWVRPTTITEVRSFLGLAGYYRCFIKDFARIAAPLTQLTRKGKKFD 545
            GI VDP KVEA++ W +P T+TE+RSFLGLAGYYR F++ F+ IAAPLT+LTRKG KF 
Sbjct: 746 TGIYVDPKKVEAILQWEQPKTVTEIRSFLGLAGYYRRFVQGFSLIAAPLTRLTRKGVKFV 805

Query: 546 WSRACESSFQELKERLASAPVLIVPDGTGNLVIYSDASKHGLGCVLMQNGRVIAYASRQL 605
           W   CE+ FQELK RL  APVL +P      V+YSDASK GLGCVLMQ+ +V+AYASRQL
Sbjct: 806 WDDVCENRFQELKNRLTFAPVLTLPVNGKGFVVYSDASKLGLGCVLMQDEKVVAYASRQL 865

Query: 606 KDYERNYPTHDLELAAVVFALKIWRHYLYGERIQVYTDHK 646
           K +E NYPTHDLELAAVVFALKIWRHYLYGE  Q++TDHK
Sbjct: 866 KRHEANYPTHDLELAAVVFALKIWRHYLYGEHCQIFTDHK 905

[Close]

BLAST of CmoCh20G011190 vs. TAIR10
Match: ATMG00860.1 (ATMG00860.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 110.9 bits (276), Expect = 2.9e-24
Identity = 51/125 (40.80%), Postives = 78/125 (62.40%), Query Frame = 1


Query: 449 HLRKVLWVLRKQRLYAKFSKCEFWLQKVVFLGH--VVSKDGITVDPAKVEAVIGWVRPTT 508
           HL  VL +  + + YA   KC F   ++ +LGH  ++S +G++ DPAK+EA++GW  P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 509 ITEVRSFLGLAGYYRCFIKDFARIAAPLTQLTRKGKKFDWSRACESSFQELKERLASAPV 568
            TE+R FLGL GYYR F+K++ +I  PLT+L +K     W+     +F+ LK  + + PV
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPV 122

Query: 569 LIVPD 572
           L +PD
Sbjct: 123 LALPD 126

[Close]

BLAST of CmoCh20G011190 vs. NCBI nr
Match: gi|595885005|ref|XP_007213082.1| (hypothetical protein PRUPE_ppa021229mg [Prunus persica])

HSP 1 Score: 635.6 bits (1638), Expect = 9.6e-179
Identity = 297/400 (74.25%), Postives = 348/400 (87.00%), Query Frame = 1


Query: 246 PVVNEFLDVFPDKLPGLPPEREVNFGIELEPRTTPISKASYRMAPAELKELKLQLQELLN 305
           PV+ +F DVFP+ LPGLPP RE+ F IEL P T PIS+A YRMAPAEL+ELK QLQEL++
Sbjct: 231 PVIQDFPDVFPEDLPGLPPHREIEFVIELAPGTNPISQAPYRMAPAELRELKTQLQELVD 290

Query: 306 QGFIRPSVSPWGAPVLFVKKKDGTLRLCIDYRELNKVTIKNKYPLPRIDDLFDQLQGAAV 365
           +GFIRPS SPWGAPVLFVKKKDGT+RLC+DYR+LNK+T++N+YPLPRIDDLFDQL+GA V
Sbjct: 291 KGFIRPSFSPWGAPVLFVKKKDGTMRLCVDYRQLNKITVRNRYPLPRIDDLFDQLKGAKV 350

Query: 366 FSKIDLRSGYHQIRVKEDDVPKTAFRTRYGHYEFVVMSFGLTNAPAVFMELMNRVFQDFL 425
           FSKIDLRSGYHQ+RV+E+D+PKTAFRTRYGHYEF+VM FGLTNAPA FM+LMNRVF+ +L
Sbjct: 351 FSKIDLRSGYHQLRVREEDMPKTAFRTRYGHYEFLVMPFGLTNAPAAFMDLMNRVFRRYL 410

Query: 426 DSFVIVFIDDILVYSKTNDEHAEHLRKVLWVLRKQRLYAKFSKCEFWLQKVVFLGHVVSK 485
           D FVIVFIDDILVYSK+   H +HL  VL  LR+++LYAKFSKC+FWL +V FLGHV+S 
Sbjct: 411 DRFVIVFIDDILVYSKSQKAHMKHLNLVLRTLRRRQLYAKFSKCQFWLDRVSFLGHVISA 470

Query: 486 DGITVDPAKVEAVIGWVRPTTITEVRSFLGLAGYYRCFIKDFARIAAPLTQLTRKGKKFD 545
           +GI VDP K+EAV+ W+RPT++TE+RSFLGLAGYYR F++ F+ IAAPLT LTRKG KF 
Sbjct: 471 EGIYVDPQKIEAVVNWLRPTSVTEIRSFLGLAGYYRRFVEGFSTIAAPLTYLTRKGVKFV 530

Query: 546 WSRACESSFQELKERLASAPVLIVPDGTGNLVIYSDASKHGLGCVLMQNGRVIAYASRQL 605
           WS  CE SF ELK RL +APVL +PD +GN VIYSDAS+ GLGCVLMQ+GRVIAYASRQL
Sbjct: 531 WSDKCEESFIELKTRLTTAPVLALPDDSGNFVIYSDASQQGLGCVLMQHGRVIAYASRQL 590

Query: 606 KDYERNYPTHDLELAAVVFALKIWRHYLYGERIQVYTDHK 646
           K +E NYP HDLELAAVVFALKIWRHYLYGE  Q++TDHK
Sbjct: 591 KKHELNYPVHDLELAAVVFALKIWRHYLYGETCQIFTDHK 630

[Close]

BLAST of CmoCh20G011190 vs. NCBI nr
Match: gi|1021486231|ref|XP_016186119.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC107627811 [Arachis ipaensis])

HSP 1 Score: 632.1 bits (1629), Expect = 1.1e-177
Identity = 296/400 (74.00%), Postives = 343/400 (85.75%), Query Frame = 1


Query: 246  PVVNEFLDVFPDKLPGLPPEREVNFGIELEPRTTPISKASYRMAPAELKELKLQLQELLN 305
            P+V EF DVFPD+L G+PP+REV F IEL P   P+S   YRMAP EL+ELK+QL+++L 
Sbjct: 662  PIVREFPDVFPDELLGMPPDREVEFSIELAPGVQPVSIPPYRMAPTELRELKVQLEDMLE 721

Query: 306  QGFIRPSVSPWGAPVLFVKKKDGTLRLCIDYRELNKVTIKNKYPLPRIDDLFDQLQGAAV 365
            +GFIRPS SPWGAPVLFVKKKDGT+RLC+DYR+LNK+T++NKYPLPRIDDLFDQLQGA  
Sbjct: 722  KGFIRPSTSPWGAPVLFVKKKDGTMRLCVDYRQLNKITVRNKYPLPRIDDLFDQLQGATC 781

Query: 366  FSKIDLRSGYHQIRVKEDDVPKTAFRTRYGHYEFVVMSFGLTNAPAVFMELMNRVFQDFL 425
            FSKIDLRSGYHQ+++KE+D+PKTAFRTRYGHYEF+VMSFGLTNAPA FM+LMNRVF+ FL
Sbjct: 782  FSKIDLRSGYHQLKIKEEDIPKTAFRTRYGHYEFLVMSFGLTNAPAAFMDLMNRVFKPFL 841

Query: 426  DSFVIVFIDDILVYSKTNDEHAEHLRKVLWVLRKQRLYAKFSKCEFWLQKVVFLGHVVSK 485
            D FVIVFIDDILVYSK+  EH  HLR VL  L+  +LYAKFSKCEFWL +V FLGHVVSK
Sbjct: 842  DRFVIVFIDDILVYSKSAAEHEYHLRIVLQTLKDHKLYAKFSKCEFWLDQVTFLGHVVSK 901

Query: 486  DGITVDPAKVEAVIGWVRPTTITEVRSFLGLAGYYRCFIKDFARIAAPLTQLTRKGKKFD 545
            DGI VDP KVEAV  W RPTT+TE+RSFLGLAGYYR FIKDF+RI+APLT+LT+K  KF 
Sbjct: 902  DGIMVDPKKVEAVQKWPRPTTVTEIRSFLGLAGYYRRFIKDFSRISAPLTKLTQKNVKFQ 961

Query: 546  WSRACESSFQELKERLASAPVLIVPDGTGNLVIYSDASKHGLGCVLMQNGRVIAYASRQL 605
            WS ACE SFQ LK  L SAPVL++P G+G   ++ DAS+ GLGCVLM +GRVIAYASRQ 
Sbjct: 962  WSEACEESFQTLKACLTSAPVLVLPSGSGGFSVFCDASRIGLGCVLMXHGRVIAYASRQP 1021

Query: 606  KDYERNYPTHDLELAAVVFALKIWRHYLYGERIQVYTDHK 646
            K +E+NYPTHDLE+AAVVFALKIWRHYLYGE  ++YTDHK
Sbjct: 1022 KKHEQNYPTHDLEMAAVVFALKIWRHYLYGETCEIYTDHK 1061

[Close]

BLAST of CmoCh20G011190 vs. NCBI nr
Match: gi|590693137|ref|XP_007044250.1| (DNA/RNA polymerases superfamily protein [Theobroma cacao])

HSP 1 Score: 630.9 bits (1626), Expect = 2.4e-177
Identity = 297/399 (74.44%), Postives = 345/399 (86.47%), Query Frame = 1


Query: 247 VVNEFLDVFPDKLPGLPPEREVNFGIELEPRTTPISKASYRMAPAELKELKLQLQELLNQ 306
           +V+EF DVFPD LPGLPP+RE+ F I+L P T PIS   YRMAP ELKELK+QLQEL+++
Sbjct: 544 IVSEFPDVFPDDLPGLPPDRELEFPIDLLPGTAPISIPPYRMAPTELKELKVQLQELVDK 603

Query: 307 GFIRPSVSPWGAPVLFVKKKDGTLRLCIDYRELNKVTIKNKYPLPRIDDLFDQLQGAAVF 366
           GFIRPS+SPWGAP+LFVKKKDGTLRLCID R+LN++TIKNKYPLPRIDDLFDQLQGA VF
Sbjct: 604 GFIRPSISPWGAPILFVKKKDGTLRLCIDCRQLNRMTIKNKYPLPRIDDLFDQLQGATVF 663

Query: 367 SKIDLRSGYHQIRVKEDDVPKTAFRTRYGHYEFVVMSFGLTNAPAVFMELMNRVFQDFLD 426
           SK+DLRSGYHQ+R+KE DVPKTAFRTRYGHYEF+VM FGLTNAPA FM+LMNRVF  +LD
Sbjct: 664 SKVDLRSGYHQLRIKEQDVPKTAFRTRYGHYEFLVMPFGLTNAPAAFMDLMNRVFHPYLD 723

Query: 427 SFVIVFIDDILVYSKTNDEHAEHLRKVLWVLRKQRLYAKFSKCEFWLQKVVFLGHVVSKD 486
            FVIVFIDDILVYS+ NDEHA HLR VL  LR+++LYAKFSKCEFWLQ+VVFLGH+VS+ 
Sbjct: 724 KFVIVFIDDILVYSRDNDEHAAHLRIVLQTLRERQLYAKFSKCEFWLQEVVFLGHIVSRT 783

Query: 487 GITVDPAKVEAVIGWVRPTTITEVRSFLGLAGYYRCFIKDFARIAAPLTQLTRKGKKFDW 546
           GI VDP KVEA++ W +P T+TE+RSFLGLAGYYR F++ F+ +AAPLT+LTRKG KF W
Sbjct: 784 GIYVDPKKVEAILQWEQPKTVTEIRSFLGLAGYYRRFVQGFSLVAAPLTRLTRKGVKFVW 843

Query: 547 SRACESSFQELKERLASAPVLIVPDGTGNLVIYSDASKHGLGCVLMQNGRVIAYASRQLK 606
              CE+ FQELK RL SAPVL +P      ++YSDASK GLGCVLMQ+ +V+AYASRQLK
Sbjct: 844 DDVCENRFQELKNRLTSAPVLTLPVNGKGFIVYSDASKLGLGCVLMQDEKVVAYASRQLK 903

Query: 607 DYERNYPTHDLELAAVVFALKIWRHYLYGERIQVYTDHK 646
            +E NYPTHDLELAAVVFALKIWRHYLYGE  +++TDHK
Sbjct: 904 RHEANYPTHDLELAAVVFALKIWRHYLYGEHCRIFTDHK 942

[Close]

BLAST of CmoCh20G011190 vs. NCBI nr
Match: gi|702455653|ref|XP_010026793.1| (PREDICTED: uncharacterized protein LOC104417177 [Eucalyptus grandis])

HSP 1 Score: 630.2 bits (1624), Expect = 4.1e-177
Identity = 292/399 (73.18%), Postives = 351/399 (87.97%), Query Frame = 1


Query: 247 VVNEFLDVFPDKLPGLPPEREVNFGIELEPRTTPISKASYRMAPAELKELKLQLQELLNQ 306
           VV EF DVFP +LPGLPPERE+ F IEL P T PISKA YRMA +ELKELK+Q+QELL++
Sbjct: 534 VVREFPDVFPKELPGLPPEREIEFVIELAPGTEPISKAPYRMALSELKELKVQMQELLDK 593

Query: 307 GFIRPSVSPWGAPVLFVKKKDGTLRLCIDYRELNKVTIKNKYPLPRIDDLFDQLQGAAVF 366
           GFIRPS SPWGAPVLFVKKKDG+LRLCIDYR+LN+VTIKNKYPLPRIDDLFDQLQGA++F
Sbjct: 594 GFIRPSASPWGAPVLFVKKKDGSLRLCIDYRQLNQVTIKNKYPLPRIDDLFDQLQGASIF 653

Query: 367 SKIDLRSGYHQIRVKEDDVPKTAFRTRYGHYEFVVMSFGLTNAPAVFMELMNRVFQDFLD 426
           SKIDLR+GYHQ+R+K++D+PK+AFRTRYGHYEF VM FGLTNAPA FM+LMNRVF+++LD
Sbjct: 654 SKIDLRTGYHQLRIKKEDIPKSAFRTRYGHYEFTVMPFGLTNAPAAFMDLMNRVFKEYLD 713

Query: 427 SFVIVFIDDILVYSKTNDEHAEHLRKVLWVLRKQRLYAKFSKCEFWLQKVVFLGHVVSKD 486
            FVIVFIDDILVYS+++++H +HLR VL  LR   LYAKFSKCEFWL +V FLGHV+S +
Sbjct: 714 QFVIVFIDDILVYSRSSEDHEKHLRIVLQTLRDHELYAKFSKCEFWLTRVAFLGHVISGE 773

Query: 487 GITVDPAKVEAVIGWVRPTTITEVRSFLGLAGYYRCFIKDFARIAAPLTQLTRKGKKFDW 546
           GI+VDPAK+EAVI W RPTT+TE+RSFLGLAGYYR F++ F+R+A+P+T+L +K +KF W
Sbjct: 774 GISVDPAKIEAVINWPRPTTVTEIRSFLGLAGYYRRFVEGFSRLASPMTRLLKKEEKFVW 833

Query: 547 SRACESSFQELKERLASAPVLIVPDGTGNLVIYSDASKHGLGCVLMQNGRVIAYASRQLK 606
           +  CE+SFQELK +L +APVL +P G G   IYSDAS  GLGCVLMQ+GRV+AYASRQL+
Sbjct: 834 TDKCENSFQELKHKLTTAPVLTIPSGPGGFEIYSDASFKGLGCVLMQHGRVVAYASRQLR 893

Query: 607 DYERNYPTHDLELAAVVFALKIWRHYLYGERIQVYTDHK 646
            +E NYPTHDLELAA++FALKIWRHYL GER Q++TDH+
Sbjct: 894 LHELNYPTHDLELAAIIFALKIWRHYLCGERFQIFTDHQ 932

[Close]

BLAST of CmoCh20G011190 vs. NCBI nr
Match: gi|1012113262|ref|XP_015960510.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC107484454 [Arachis duranensis])

HSP 1 Score: 629.0 bits (1621), Expect = 9.0e-177
Identity = 292/400 (73.00%), Postives = 340/400 (85.00%), Query Frame = 1


Query: 246 PVVNEFLDVFPDKLPGLPPEREVNFGIELEPRTTPISKASYRMAPAELKELKLQLQELLN 305
           P+V EF DVFPD+LPG+PP REV F IEL P   P+S   YRMAP EL+ELK+QL+++L 
Sbjct: 427 PIVREFPDVFPDELPGMPPNREVEFSIELAPGVQPVSIPPYRMAPTELRELKVQLEDMLE 486

Query: 306 QGFIRPSVSPWGAPVLFVKKKDGTLRLCIDYRELNKVTIKNKYPLPRIDDLFDQLQGAAV 365
           +GFIRPS SPWGAPVLFVKKKDGT+RLC+DYR+LNK+T++NKYPLPRIDDLFDQLQGA  
Sbjct: 487 KGFIRPSTSPWGAPVLFVKKKDGTMRLCVDYRQLNKITVRNKYPLPRIDDLFDQLQGATC 546

Query: 366 FSKIDLRSGYHQIRVKEDDVPKTAFRTRYGHYEFVVMSFGLTNAPAVFMELMNRVFQDFL 425
           FSKIDLRSGYHQ+++KE+D+PKT FRTRY HYEF+VMSF LTNAPA FM+LMNRVF+ FL
Sbjct: 547 FSKIDLRSGYHQLKIKEEDIPKTTFRTRYRHYEFLVMSFCLTNAPAAFMDLMNRVFKPFL 606

Query: 426 DSFVIVFIDDILVYSKTNDEHAEHLRKVLWVLRKQRLYAKFSKCEFWLQKVVFLGHVVSK 485
           D FVI+FIDDILVYSK+  EH  HLR VL  LR  +LYAKFSKCEFWL +V FLGHV+SK
Sbjct: 607 DRFVIIFIDDILVYSKSATEHEYHLRIVLQTLRDHKLYAKFSKCEFWLDQVTFLGHVISK 666

Query: 486 DGITVDPAKVEAVIGWVRPTTITEVRSFLGLAGYYRCFIKDFARIAAPLTQLTRKGKKFD 545
           DGI VDP KVEAV  W RPTT+TE+RSFLGLAGYYR FIKDF+RI+ PLT+LT+K  KF 
Sbjct: 667 DGIMVDPKKVEAVQKWPRPTTVTEIRSFLGLAGYYRRFIKDFSRISTPLTKLTQKNVKFQ 726

Query: 546 WSRACESSFQELKERLASAPVLIVPDGTGNLVIYSDASKHGLGCVLMQNGRVIAYASRQL 605
           WS ACE  FQ LK  L SAPVL++P G+G   ++ DAS+ GLGCVLMQ+GRVIAYASRQL
Sbjct: 727 WSEACEEGFQTLKACLTSAPVLVLPSGSGGFSVFCDASRIGLGCVLMQHGRVIAYASRQL 786

Query: 606 KDYERNYPTHDLELAAVVFALKIWRHYLYGERIQVYTDHK 646
           K +E+NYPTHD+E+AAVVFALKIWRHYLYGE  ++YTDHK
Sbjct: 787 KKHEQNYPTHDMEMAAVVFALKIWRHYLYGETCEIYTDHK 826

The following BLAST results are available for this feature:

BLAST of CmoCh20G011190 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POL3_DROME	1.7e-82	42.16	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
POL2_DROME	1.6e-80	40.75	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
POL5_DROME	1.4e-73	38.57	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
YG31B_YEAST	2.3e-71	36.88	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
YI31B_YEAST	3.0e-71	36.88	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of CmoCh20G011190 vs. TrEMBL


Match Name	E-value	Identity	Description
M5WLY8_PRUPE	6.7e-179	74.25	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021229mg PE=4 SV=1	[more]
A0A061E6T4_THECC	1.7e-177	74.44	DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV...	[more]
A0A061FHZ8_THECC	6.3e-177	73.18	DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_033345 PE=4 SV...	[more]
A0A061EEG7_THECC	8.2e-177	73.43	DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_018243 PE=4 SV...	[more]
A0A061DW51_THECC	5.3e-176	74.25	DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_003698 PE=4 SV...	[more]

BLAST of CmoCh20G011190 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00860.1	2.9e-24	40.80	ATMG00860.1 DNA/RNA polymerases superfamily protein	[more]

BLAST of CmoCh20G011190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|595885005\|ref\|XP_007213082.1\|	9.6e-179	74.25	hypothetical protein PRUPE_ppa021229mg [Prunus persica]	[more]
gi\|1021486231\|ref\|XP_016186119.1\|	1.1e-177	74.00	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC107627811 [Arachis ip...	[more]
gi\|590693137\|ref\|XP_007044250.1\|	2.4e-177	74.44	DNA/RNA polymerases superfamily protein [Theobroma cacao]	[more]
gi\|702455653\|ref\|XP_010026793.1\|	4.1e-177	73.18	PREDICTED: uncharacterized protein LOC104417177 [Eucalyptus grandis]	[more]
gi\|1012113262\|ref\|XP_015960510.1\|	9.0e-177	73.00	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC107484454 [Arachis du...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000477	RT_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G011190.1	CmoCh20G011190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 323..482 score: 5.2
IPR000477	Reverse transcriptase domain	PROFILE	PS50878	RT_POL	coord: 304..483 score: 11
None	No IPR available	unknown	Coil	Coil	coord: 286..306 scor
None	No IPR available	GENE3D	G3DSA:3.10.10.10		coord: 272..413 score: 5.5
None	No IPR available	GENE3D	G3DSA:3.30.70.270		coord: 414..492 score: 3.
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 316..645 score: 4.8E
None	No IPR available	PANTHER	PTHR24559:SF207	SUBFAMILY NOT NAMED	coord: 316..645 score: 4.8E
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 247..645 score: 9.78E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh20G011190	Cucurbita pepo (Zucchini)	cmocpeB517
CmoCh20G011190	Cucurbita pepo (Zucchini)	cmocpeB538
CmoCh20G011190	Bottle gourd (USVL1VR-Ls)	cmolsiB492
CmoCh20G011190	Cucumber (Gy14) v2	cgybcmoB210
CmoCh20G011190	Silver-seed gourd	carcmoB1417
CmoCh20G011190	Cucumber (Chinese Long) v3	cmocucB0638
CmoCh20G011190	Watermelon (97103) v2	cmowmbB546
CmoCh20G011190	Cucurbita moschata (Rifu)	cmocmoB407
CmoCh20G011190	Cucumber (Gy14) v1	cgycmoB0696
CmoCh20G011190	Cucurbita maxima (Rimu)	cmacmoB551
CmoCh20G011190	Cucurbita maxima (Rimu)	cmacmoB609
CmoCh20G011190	Wild cucumber (PI 183967)	cmocpiB537
CmoCh20G011190	Cucumber (Chinese Long) v2	cmocuB530
CmoCh20G011190	Cucumber (Chinese Long) v2	cmocuB532
CmoCh20G011190	Watermelon (Charleston Gray)	cmowcgB480
CmoCh20G011190	Watermelon (97103) v1	cmowmB521