CmoCh20G010970 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh20G010970
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr20 : 10431321 .. 10431902 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCAGAGGAATAATTTGTATGCAACATCACTTAAATTCAGACTTTTAAGACAACAGGGTTTCAATGTTTCAAATATTTCTTTTTAATAAAAGTATCATCAATTAATATATATTTCTTACATTTTAAATGAATTTGATTTTATCTCATTAATTATTTCATTTTAAATGAATTTGATTTTATTTCACTTCAATTTATTCTATTTGTTTTTGAATTATTTCATTAATGTTAGAACGGTGTAATGGAACAGTGAATATGTCAAATCTACAAATATGTGAAAATGTCGAAGTTTAATATTATACTCATGTTAGATTAGACCATGCATATATATTAATTTAACTTTTAATATTATAATGACAGAGGTTTTCTATAATTTCATGGATGAGACGAAGAACTTTAGCACATGATAGGATTTAAATGGAATGTTATCATTGTATGAAGCTTCTTTCTTAGGTATAGAAGGTGAGAACATTTTAGAGGCAGCAAAACATTTTACAATCAACTATTTGAAAAAATACATAAGATCCTGTAGGGATGAATATGAAGCCTCTATTATTCGACATGCGTTGGAGCTTCCCTAA

mRNA sequence

ATGATTCAGAGGAATAATTTGTATGCAACATCACTTAAATTCAGACTTTTAAGACAACAGGGTATAGAAGGTGAGAACATTTTAGAGGCAGCAAAACATTTTACAATCAACTATTTGAAAAAATACATAAGATCCTGTAGGGATGAATATGAAGCCTCTATTATTCGACATGCGTTGGAGCTTCCCTAA

Coding sequence (CDS)

ATGATTCAGAGGAATAATTTGTATGCAACATCACTTAAATTCAGACTTTTAAGACAACAGGGTATAGAAGGTGAGAACATTTTAGAGGCAGCAAAACATTTTACAATCAACTATTTGAAAAAATACATAAGATCCTGTAGGGATGAATATGAAGCCTCTATTATTCGACATGCGTTGGAGCTTCCCTAA
Homology
[Close]
BLAST of CmoCh20G010970 vs. Swiss-Prot
Match: MYRS_QUEIL (Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.1e-06
Identity = 31/96 (32.29%), Postives = 46/96 (47.92%), Query Frame = 1 

Query: 6   NLYATSLKFRLLRQQG---------------------------------------IEGEN 63
           NLYAT+LKFRLLRQ G                                       IEGEN
Sbjct: 149 NLYATALKFRLLRQHGYSVSQEVFNSFKDERGSFKACLCEDTKGMLSLYEASFFLIEGEN 208

[Close]
BLAST of CmoCh20G010970 vs. TrEMBL
Match: A0A0A0LM62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G299890 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 8.8e-12
Identity = 44/100 (44.00%), Postives = 53/100 (53.00%), Query Frame = 1 

Query: 3   QRNNLYATSLKFRLLRQQG----------------------------------------I 62
           + NNLYATSL+FRLLRQ G                                        I
Sbjct: 140 KNNNLYATSLEFRLLRQHGFNLSQDVFNNFYSSETKSFNTQMYQDLNGMLFLYEASFLSI 199

[Close]
BLAST of CmoCh20G010970 vs. TrEMBL
Match: A0A0A0LM58_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G299350 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 8.8e-12
Identity = 44/100 (44.00%), Postives = 53/100 (53.00%), Query Frame = 1 

Query: 3   QRNNLYATSLKFRLLRQQG----------------------------------------I 62
           + NNLYATSL+FRLLRQ G                                        I
Sbjct: 98  KNNNLYATSLEFRLLRQHGFNLSQDVFNNFYSSETKSFNTQMYQDLNGMLFLYEASFLSI 157

[Close]
BLAST of CmoCh20G010970 vs. TrEMBL
Match: A0A0A0LMX2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G299920 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.4e-11
Identity = 44/98 (44.90%), Postives = 51/98 (52.04%), Query Frame = 1 

Query: 5   NNLYATSLKFRLLRQQG----------------------------------------IEG 63
           NNLYATSL+FRLLRQ G                                        IEG
Sbjct: 146 NNLYATSLEFRLLRQYGFNIQQDVFNHFFSNETKSFNVQLYEDLNGMLCLYEASFLSIEG 205

[Close]
BLAST of CmoCh20G010970 vs. NCBI nr
Match: gi|700207000|gb|KGN62119.1| (hypothetical protein Csa_2G299890 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-11
Identity = 44/100 (44.00%), Postives = 53/100 (53.00%), Query Frame = 1 

Query: 3   QRNNLYATSLKFRLLRQQG----------------------------------------I 62
           + NNLYATSL+FRLLRQ G                                        I
Sbjct: 140 KNNNLYATSLEFRLLRQHGFNLSQDVFNNFYSSETKSFNTQMYQDLNGMLFLYEASFLSI 199

[Close]
BLAST of CmoCh20G010970 vs. NCBI nr
Match: gi|778674232|ref|XP_011650166.1| (PREDICTED: terpene synthase 10-like [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-11
Identity = 44/100 (44.00%), Postives = 53/100 (53.00%), Query Frame = 1 

Query: 3   QRNNLYATSLKFRLLRQQG----------------------------------------I 62
           + NNLYATSL+FRLLRQ G                                        I
Sbjct: 112 KNNNLYATSLEFRLLRQHGFNLSQDVFNNFYSSETKSFNTQMYQDLNGMLFLYEASFLSI 171

[Close]
BLAST of CmoCh20G010970 vs. NCBI nr
Match: gi|700206995|gb|KGN62114.1| (hypothetical protein Csa_2G299350 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-11
Identity = 44/100 (44.00%), Postives = 53/100 (53.00%), Query Frame = 1 

Query: 3   QRNNLYATSLKFRLLRQQG----------------------------------------I 62
           + NNLYATSL+FRLLRQ G                                        I
Sbjct: 98  KNNNLYATSLEFRLLRQHGFNLSQDVFNNFYSSETKSFNTQMYQDLNGMLFLYEASFLSI 157

[Close]
BLAST of CmoCh20G010970 vs. NCBI nr
Match: gi|778670174|ref|XP_011649391.1| (PREDICTED: terpene synthase 10 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-11
Identity = 44/100 (44.00%), Postives = 53/100 (53.00%), Query Frame = 1 

Query: 3   QRNNLYATSLKFRLLRQQG----------------------------------------I 62
           + NNLYATSL+FRLLRQ G                                        I
Sbjct: 98  KNNNLYATSLEFRLLRQHGFNLSQDVFNNFYSSETKSFNTQMYQDLNGMLFLYEASFLSI 157

[Close]
BLAST of CmoCh20G010970 vs. NCBI nr
Match: gi|659122221|ref|XP_008461028.1| (PREDICTED: terpene synthase 10-like [Cucumis melo])

HSP 1 Score: 75.9 bits (185), Expect = 2.8e-11
Identity = 44/100 (44.00%), Postives = 53/100 (53.00%), Query Frame = 1 

Query: 3   QRNNLYATSLKFRLLRQQG----------------------------------------I 62
           ++ NLYATSL+FRLLRQ G                                        I
Sbjct: 139 KKKNLYATSLEFRLLRQHGFNLSQDVFNNFYSDETKSFSTQLYEELNGILCLHEASFLSI 198

The following BLAST results are available for this feature:
BLAST of CmoCh20G010970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MYRS_QUEIL2.1e-0632.29Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1[more]
BLAST of CmoCh20G010970 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LM62_CUCSA8.8e-1244.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G299890 PE=3 SV=1[more]
A0A0A0LM58_CUCSA8.8e-1244.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G299350 PE=3 SV=1[more]
A0A0A0LMX2_CUCSA4.4e-1144.90Uncharacterized protein OS=Cucumis sativus GN=Csa_2G299920 PE=3 SV=1[more]
BLAST of CmoCh20G010970 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh20G010970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207000|gb|KGN62119.1|1.3e-1144.00hypothetical protein Csa_2G299890 [Cucumis sativus][more]
gi|778674232|ref|XP_011650166.1|1.3e-1144.00PREDICTED: terpene synthase 10-like [Cucumis sativus][more]
gi|700206995|gb|KGN62114.1|1.3e-1144.00hypothetical protein Csa_2G299350 [Cucumis sativus][more]
gi|778670174|ref|XP_011649391.1|1.3e-1144.00PREDICTED: terpene synthase 10 [Cucumis sativus][more]
gi|659122221|ref|XP_008461028.1|2.8e-1144.00PREDICTED: terpene synthase 10-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001906Terpene_synth_N
IPR008930Terpenoid_cyclase/PrenylTrfase
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0010333terpene synthase activity
GO:0016829lyase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0010333 terpene synthase activity
molecular_function GO:0016829 lyase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G010970.1CmoCh20G010970.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001906Terpene synthase, N-terminal domainGENE3DG3DSA:1.50.30.10coord: 22..62
score: 1.
IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroidunknownSSF48239Terpenoid cyclases/Protein prenyltransferasescoord: 2..62
score: 1.41

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh20G010970Lsi10G006920Bottle gourd (USVL1VR-Ls)cmolsiB492
CmoCh20G010970CsaV3_2G017930Cucumber (Chinese Long) v3cmocucB0642
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh20G010970Cucurbita maxima (Rimu)cmacmoB551
CmoCh20G010970Cucurbita maxima (Rimu)cmacmoB609
CmoCh20G010970Wild cucumber (PI 183967)cmocpiB537
CmoCh20G010970Cucumber (Chinese Long) v2cmocuB532
CmoCh20G010970Melon (DHL92) v3.5.1cmomeB486
CmoCh20G010970Melon (DHL92) v3.5.1cmomeB492
CmoCh20G010970Watermelon (Charleston Gray)cmowcgB480
CmoCh20G010970Watermelon (97103) v1cmowmB521
CmoCh20G010970Cucurbita pepo (Zucchini)cmocpeB517
CmoCh20G010970Cucurbita pepo (Zucchini)cmocpeB538
CmoCh20G010970Cucumber (Gy14) v2cgybcmoB210
CmoCh20G010970Melon (DHL92) v3.6.1cmomedB562
CmoCh20G010970Silver-seed gourdcarcmoB1417
CmoCh20G010970Cucumber (Chinese Long) v3cmocucB0638
CmoCh20G010970Watermelon (97103) v2cmowmbB546
CmoCh20G010970Wax gourdcmowgoB0682
CmoCh20G010970Cucurbita moschata (Rifu)cmocmoB407
CmoCh20G010970Cucumber (Gy14) v1cgycmoB0696