CmoCh20G010230 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh20G010230
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Retrotransposon protein, putative, unclassified
Location	Cmo_Chr20 : 7144808 .. 7148537 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGCTACTTGGGATGATAGTGATGAAAGTGCAAGTGGAAGTGATGAAGAAGTAGCAAATTTTTGCTTCATGGCTCACAGTGACAATGAGGATGAACAAGAAGATGAACAAGAAGATGAGGTAACTCTTGAATCTCTTTCTTATCATGAATTATTTAAACTTATTGATGAGATGACAATTGATTTAGAAAAACTTAGTTCAAAGTATGTTGTGCTTAAAAAGAAATATAAGACTTCCATTATTGAAAATAAGTCTTTACTAAATGAAATTTCTTGCTTAAAAGAGAAGGATCATAATATCGTTAAAATTGATGTACCTTGTGAAAAGCATGTATTTGATTGTGATGAGAAAAATGCATTAATTGATAAAGTCAAGTCTCTCGAGCATGATTGTGGTGAAAAAGATAAATTAATTAAATTGCTCAAAGAGAATGAATCAAATAATTTGCAAGAACTTGGTAGGGCTAAGGAATCTATTAAAATGTTAACAATAGGTGCTCAAAAATTAGATAAAATACTTGAACGAGGTAAGTCATATGGTGATAAAAGAGGATTGGGCTATATTGATGAATGTTCTATACCTTCAAGTTCTAAAACAATATTTGTTAAAGCATCCCCTATCTTGTCTAAATCTAACACGTAAATTTGTATATAAATCTAGATTTGTGCCTATATGTCATTATTGTGGTGTTGAAGGTCATATTAGACCTAAGTGCTTTAAATTGAAAAATTCTCAAAATATTCATATAGGAAGAAAAGTTTCTCAAAATACAAAGTTTAACAATGTTTTAGAAAATAATTTTTCGAATAAAAATAGAATACACAAATTTAGTCCAAGAAATAAATTCTTGCATAATGTCGTTTGTTTCTCGTGTGGTAAGTTTGGACATAAAGATTATTCTTGTTACTTATCTAAATACAATGTCTTTAATAGGAATGCAAATATGAAATGGATTCCTAAATTTGTGAATACTAACTTTCTAGGACCCAAACAAGTATGGGTACCAAAAGGTCAATTTTGAATATCTTTGTTTTTAGGTTTGTTTGAAAGCCTCCAAGAAAAATAAGTGGTACTTGGATAGTGGTTGCTCAAGACACATGACGGGTAATCCATCCAAGTTTGTGAATCTTTCCAAGAAGGATGGTGGCTTAGTAACCTTTGGTGATAACAAGAAGGGTAAAATAATTGGTAAGGGTACTATAGGTAATGACTCTTGTACTCTCATTGAAAATGTATTGTTAGTTGATGGTTTAAAGCATGACTTACTTAGCATTAGTCAATTATGTGATAAAGGTTTTAGAGTTGTATTTGATAAGAATAATTGCATAATTGAAAATGCTAGTGATAGAAAAGTTTTGTTTGTAGGAAATAGAGACGATAATGTGTATACTATTAATTTGAATGATTGTCCTACAAATGATAAATGTCTTTTGGTTTTGCTTGATAACTCTTGGCTATGGCATAGAAGACTAGGACATGCTAGTATGAACTTGATTTCAAATATTTCAAAAAATTCATTAGTTAGAGGTCTTCCTCAACTTAAATTTGAAAAAGATAAAATTTGTGACGCTTGTCAAATGGGTAAGCAAACTAAGTCTTCTTTCAAATCTAAAAATATGATTTCTACTACTAGACCTCTTCAACTACTCCATATGGACTTATTTGGCCCTTCTAAAATAGCTAGTTATGGAGGAAATTATTATGCTTTTGTGATAGTGGATGATTTTTCAAGATTTACTTGGGTTTTGATGATAAAACATAAGAATGATGTTTTGAAAAGATTTGCTAGTTTTGTAAAAAGAGTTCAAAATGAAAAAGAGTTTTTAATTACTAAAATTAGGAGTGACCATGGAGGAGAATTTAACAGTGTTGCCTTTGAAAAATTTTGTGAAGATAATGGTTTTTCTCATGACTTCTCCTCTCCAAAGACTCCTCAACAAAACGGTGTGGTTGAAAGGAAAAATCGTACTTTACAAGAATTTGCTAGATCAATGTTAAATGAGTATGATTTACCTAAATATTTTTGGGCGGAAGCCGTTAATACTGCTTGTTATATTTTAAATAGAGTTTTAATTAGACCTTCATTAAATAAAACTCCTTATGAACTTTGGCATAACAAAATTCCAAATGTTGGGTATTTCAAAGTTTTTGGTTGTAAATGTTTTATTTTGAACAACAAAGAGAAGCTTGGAAAGTTTGATTCAAAAACGGATATTGGTATTTTTCTTGACTATTCATCTACTAGTAAAGCTTATAGAATTTTCAATAAGAGAACTTTAGTTATTGAAGAATCTATGCATGTGGTATTTGATGAATCTTGCAATAATATTTCTAATGAGTCTATTTGTAGTGATGATTTAGAAAGAAATTTTGGAGATTTACTCGTTAGTGACAACGACAAAGAAATTGTTACGAGTAAAGAAGAGATGAGCTTAAAGGAAGAAGGTTCTTCATCAATGCCAAAAGAATGGAGGTATGCCTTGTCTCATCCCAAGGACTTGATTCTTGGTGATCTCGAACAAGGTGTGAAAACTCGCTCTTCTATTAGTTTATTTAATAATCTTGCTTTTGTTTCTCAAATTGAACCAAAAAGTATTAAGGATGCCGAAAATGATGAGTTTTGGATTTTAGCCATGCAAGAGGAGCTAAATCAATTTGAGAGGAACAAAGTTTGGGAATTAGTCCCTAGGCCATCTAATACTTCTATTATTGGAACCAAATGGGTTTTTAGAAATAAAATGGATGAAAATGGGAATATCATTAGAAATAAAGCTAGGCTTGTAGCGTTATTGTCGAGAGGAAGGCATAGATTATGAAGAAACTTTTGCACCCGTGGCTAGATTAGAAGCTATTAGAATGTTACTTGCTTTTGCTCCTTACAAAAATTTTGTATTATATCAAATGGATGTGAAAAGTGCATTTTTGAATGGTTATATTATGGAGGAAGTTTACGTAGAACAACCTCCCGGATTTGAAAATGTAGAATTTTCTCATCATGTCTATAAGTTGAAAAAGGCTCTTTATGGTTTAAAACAAGCTCCAAGAGCTTGGTATGATAGACTCAGTAATTTTCTTATTGGGAATGATTTTAAAATGAGCAAACTCGACACTACACTTTTTATTAAGATTAAAGAAAACGATATGCTATTAGTGCAAATATATGTGGATGATATCATATTTGGTTCTACTAATCCTTCTTTATGTGAAGAATTTTCTAAATGTATGCATAGTGAGTTTGAGATGAGTATGATGGGAGAACTCAGTTTCTTTCTTGGACTTCAAATCAAACACCTCAAGAATGGTATCTTCATCAATCAAGAGAAATACACTAAAGATTTGCTCAAAAGATTCAAGTTCAATGGAGGTAAGATTGCAAGAACTCCCATGAGCACATCCACTAAGCTTGACAAGGATGAAAAAGGTAAAAGTGTGGATATTAAAGCTTATCGAGGTATGATTGGATCTTTACTTTACTTGACCGCTAGTAGACCCGATATTATGTTTAGTGTATGTCTTTGTGCTAGATTTCAATCTTGTCCTAAGGAATCTCATTTACATACCGTTAAGAGAATATTTAAATATTTGCTTGGAACTATTGATCTAGGATTGTGGTATCCTAGAAATGTTGAATTTAAATTGATAGGATATTCTGATGCAGATTTTGCCGGAAGCTTACTTGATCGTAAAAGTACTAGTGGAACTTGTCAATTTCTTGGTAGTTCCTTAG

mRNA sequence

ATGAAGGCTACTTGGGATGATAGTGATGAAAGTGCAAGTGGAAGTGATGAAGAAGTAGCAAATTTTTGCTTCATGGCTCACAGTGACAATGAGGATGAACAAGAAGATGAACAAGAAGATGAGGTTTGTTTGAAAGCCTCCAAGAAAAATAAGTGGTACTTGGATAGTGGTTGCTCAAGACACATGACGGGTAATCCATCCAAGTTTGTGAATCTTTCCAAGAAGGATGGTGGCTTAGTAACCTTTGGTGATAACAAGAAGGGTAAAATAATTGGTAAGGGTACTATAGAAAGAAATTTTGGAGATTTACTCGTTAGTGACAACGACAAAGAAATTGTTACGAGTAAAGAAGAGATGAGCTTAAAGGAAGAAGGTTCTTCATCAATGCCAAAAGAATGGAGTGAGTTTGAGATGAGTATGATGGGAGAACTCAGTTTCTTTCTTGGACTTCAAATCAAACACCTCAAGAATGGTATCTTCATCAATCAAGAGAAATACACTAAAGATTTGCTCAAAAGATTCAAGTTCAATGGAGGTAAGATTGCAAGAACTCCCATGAGCACATCCACTAAGCTTGACAAGGATGAAAAAGGTAAAAGTGTGGATATTAAAGCTTATCGAGGTATGATTGGATCTTTACTTTACTTGACCGCTAGTAGACCCGATATTATGTTTAGTATTTTGCCGGAAGCTTACTTGATCGTAAAAGTACTAGTGGAACTTGTCAATTTCTTGGTAGTTCCTTAG

Coding sequence (CDS)

ATGAAGGCTACTTGGGATGATAGTGATGAAAGTGCAAGTGGAAGTGATGAAGAAGTAGCAAATTTTTGCTTCATGGCTCACAGTGACAATGAGGATGAACAAGAAGATGAACAAGAAGATGAGGTTTGTTTGAAAGCCTCCAAGAAAAATAAGTGGTACTTGGATAGTGGTTGCTCAAGACACATGACGGGTAATCCATCCAAGTTTGTGAATCTTTCCAAGAAGGATGGTGGCTTAGTAACCTTTGGTGATAACAAGAAGGGTAAAATAATTGGTAAGGGTACTATAGAAAGAAATTTTGGAGATTTACTCGTTAGTGACAACGACAAAGAAATTGTTACGAGTAAAGAAGAGATGAGCTTAAAGGAAGAAGGTTCTTCATCAATGCCAAAAGAATGGAGTGAGTTTGAGATGAGTATGATGGGAGAACTCAGTTTCTTTCTTGGACTTCAAATCAAACACCTCAAGAATGGTATCTTCATCAATCAAGAGAAATACACTAAAGATTTGCTCAAAAGATTCAAGTTCAATGGAGGTAAGATTGCAAGAACTCCCATGAGCACATCCACTAAGCTTGACAAGGATGAAAAAGGTAAAAGTGTGGATATTAAAGCTTATCGAGGTATGATTGGATCTTTACTTTACTTGACCGCTAGTAGACCCGATATTATGTTTAGTATTTTGCCGGAAGCTTACTTGATCGTAAAAGTACTAGTGGAACTTGTCAATTTCTTGGTAGTTCCTTAG

Homology

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BLAST of CmoCh20G010230 vs. Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-08
Identity = 35/97 (36.08%), Postives = 55/97 (56.70%), Query Frame = 1


Query: 134 SEFEMSMMGELSFFLGLQIKHLKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLD 193
           S F M  +G + +FLG+QIK   +G+F++Q KY + +L     N G +   PMST   L 
Sbjct: 29  STFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILN----NAGMLDCKPMSTPLPLK 88

Query: 194 KDEK---GKSVDIKAYRGMIGSLLYLTASRPDIMFSI 228
            +      K  D   +R ++G+L YLT +RPDI +++
Sbjct: 89  LNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAV 121

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BLAST of CmoCh20G010230 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 8.4e-06
Identity = 49/170 (28.82%), Postives = 79/170 (46.47%), Query Frame = 1


Query: 68   KFVNLSKKDGGLVTFGDNKKGKIIGKGTIERNFGDLLVSDNDKEIVTSKEEMSLKEEGSS 127
            KF +  K    L T+ D     +  K   E NF  LL+  +D  IV   + +  K +G  
Sbjct: 973  KFDSFMKSQTYLKTYSDPC---VYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDL 1032

Query: 128  SMPKEWSEFEMSMMGELSFFLGLQI--KHLKNGIFINQEKYTKDLLKRFKFNGGKIARTP 187
            S       F+M  +G     LG++I  +     ++++QEKY + +L+RF     K   TP
Sbjct: 1033 S-----KSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTP 1092

Query: 188  MSTSTKLDK-------DEKGKSVDIKAYRGMIGSLLY-LTASRPDIMFSI 228
            ++   KL K       +EKG    +  Y   +GSL+Y +  +RPDI  ++
Sbjct: 1093 LAGHLKLSKKMCPTTVEEKGNMAKV-PYSSAVGSLMYAMVCTRPDIAHAV 1133

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BLAST of CmoCh20G010230 vs. TrEMBL
Match: A5AWL4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037898 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 3.9e-34
Identity = 98/205 (47.80%), Postives = 118/205 (57.56%), Query Frame = 1


Query: 3   ATWDDSDESASGSDE-EVANFCFMAHSDNEDEQEDEQEDEVCLKASKKNKWYLDSGCSRH 62
           ATW +S ES+    E EVAN CFM        + DE +D      SKK+KW+LDSGCSRH
Sbjct: 351 ATWSESKESSEEEKEKEVANMCFM--------EIDELDD-----GSKKDKWFLDSGCSRH 410

Query: 63  MTGNPSKFVNLSKKDGGLVTFGDNKKGKIIGKGTIERNFGDLLVSDNDKEIVTSKEEMSL 122
           M G+ SKF  L+KK+GG VTF DN   +IIG+G IE  F   +                 
Sbjct: 411 MIGDESKFAFLTKKNGGYVTFEDNATRRIIGQGNIE--FFKCM----------------- 470

Query: 123 KEEGSSSMPKEWSEFEMSMMGELSFFLGLQIKHLKNGIFINQEKYTKDLLKRFKFNGGKI 182
                       SEFEMSM+GEL+FF+GLQI  LK   FINQ KY +DLLKRF     K 
Sbjct: 471 -----------HSEFEMSMVGELNFFIGLQINQLKERTFINQAKYIRDLLKRFNMEESKT 512

Query: 183 ARTPMSTSTKLDKDEKGKSVDIKAY 207
            +TPMS+S KLDKDEKG+  D  +Y
Sbjct: 531 MKTPMSSSIKLDKDEKGRHRDEVSY 512

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BLAST of CmoCh20G010230 vs. TrEMBL
Match: C7J6P4_ORYSJ (Os09g0272800 protein OS=Oryza sativa subsp. japonica GN=Os09g0272800 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 5.1e-34
Identity = 106/252 (42.06%), Postives = 139/252 (55.16%), Query Frame = 1


Query: 10  ESASGSDEE---VANFCFMAHSDNEDEQEDEQEDEVCLKASKKNKWYLDSGCSRHMTGNP 69
           +  SG D++   V++ CFM   +++ E ED +     L A K+N W +DSGCSRHMTG+ 
Sbjct: 347 DGESGDDDKGKNVSDVCFMVRGESDTEYEDNE----ALVARKENVWIVDSGCSRHMTGDK 406

Query: 70  SKFVNLSKKDGG-LVTFGDNKKGKIIGKGTIE------RNFGDLLVSDNDKEIVTSKEEM 129
           + F +L K      + F +     ++  G ++      R F D    D+D E  TS    
Sbjct: 407 NCFSSLKKASKTESIVFANASTSAVVATGLVKVQGEDGRIFEDESDYDHDDENSTSTSTE 466

Query: 130 SLKEEGSSSM-----------PKEW------------SEFEMSMMGELSFFLGLQIKHLK 189
           +  E GS+S            P E              EFEMSMMGELS+FLGLQIK   
Sbjct: 467 T--ERGSTSEVAAPLHNQRRHPPEQIIGNIDFAETMRREFEMSMMGELSYFLGLQIKQTP 526

Query: 190 NGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKAYRGMIGSLLYL 229
            G F++Q KYTKDLL+RFK    K   TP+ ++  LD DE G++VD K YR MIGSLLYL
Sbjct: 527 QGTFVHQTKYTKDLLRRFKMENCKQISTPIGSTVVLDPDEDGEAVDQKEYRSMIGSLLYL 586

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BLAST of CmoCh20G010230 vs. TrEMBL
Match: A5AFZ1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022257 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.5e-33
Identity = 108/244 (44.26%), Postives = 135/244 (55.33%), Query Frame = 1


Query: 3   ATWDDSDESASGS--DEEVANFCFM-------AHSDNEDEQEDEQEDE------------ 62
           ATW +S++ +S    ++EVAN  FM       A+S+  DE   +  +E            
Sbjct: 2   ATWSESEDESSEEKKNKEVANMYFMTIDELDEANSNLGDEDIHDAFEELYENFEKLSLKN 61

Query: 63  VCLK------------ASKKNKWYLDSGCSRHMTGNPSKFVNLSKKDGGLVTFGDNKKGK 122
           + LK             SKK+KW LDSGCSRHMTG+ SKF  L+KK GG V+FGDN K +
Sbjct: 62  ISLKKKVQQLEKELGEGSKKDKWLLDSGCSRHMTGDESKFAFLTKKKGGYVSFGDNAKRR 121

Query: 123 IIGKGTIERNFGDL------LVSDNDK--------EIVTSKEEMSLKEEGSSSMPKEWSE 182
           IIG+G I    G +         +ND         +I+     +S+ EE S  M    SE
Sbjct: 122 IIGQGNIGFKMGKIDTTLFIKTKENDMXLVQIYVDDIIFGVTNVSICEEFSKCMH---SE 181

Query: 183 FEMSMMGELSFFLGLQIKHLKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKD 200
           FEMSMMGEL+FFLGLQIK LK G FINQ  Y  DLLKRF     K  +TPMS+S KLDKD
Sbjct: 182 FEMSMMGELNFFLGLQIKQLKEGTFINQANYIGDLLKRFNMEEAKTMKTPMSSSIKLDKD 241

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BLAST of CmoCh20G010230 vs. TrEMBL
Match: A5C529_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039827 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.4e-31
Identity = 81/126 (64.29%), Postives = 91/126 (72.22%), Query Frame = 1


Query: 103 LLVSDNDKEIVTSKEEMSLKEEGSSSMPKEWSEFEMSMMGELSFFLGLQIKHLKNGIFIN 162
           LLV     +I+     +SL EE S  M    SEFEMSMMGEL+FFLGLQIK L  G FIN
Sbjct: 65  LLVQIYVDDIIFGATNVSLHEEFSKCMH---SEFEMSMMGELNFFLGLQIKQLNEGTFIN 124

Query: 163 QEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKAYRGMIGSLLYLTASRPD 222
           Q KY +DLLKRF     K  +TPMS+S KLDKDEKGKS+D   YRGMIGSLLYLTASRPD
Sbjct: 125 QAKYIRDLLKRFNMEEAKTMKTPMSSSIKLDKDEKGKSIDSTMYRGMIGSLLYLTASRPD 184

Query: 223 IMFSIL 229
           IM++IL
Sbjct: 185 IMYNIL 187

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BLAST of CmoCh20G010230 vs. TrEMBL
Match: A0A151TIF5_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_013123 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.2e-30
Identity = 83/142 (58.45%), Postives = 98/142 (69.01%), Query Frame = 1


Query: 87  KGKIIGKGTIERNFGD-LLVSDNDKEIVTSKEEMSLKEEGSSSMPKEWSEFEMSMMGELS 146
           +GK+     I+R   D LLV     +I+       L +E S+ M    SEFEMSMMGEL+
Sbjct: 561 RGKVDTTLFIKRKMNDILLVQIYVDDIIFGATNDYLCKEFSNDMQ---SEFEMSMMGELN 620

Query: 147 FFLGLQIKHLKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKA 206
           FFLGLQI+  KNGIFINQ KY K+LLKRF     K   TPMST+  LDKDE GKS+D+K 
Sbjct: 621 FFLGLQIRQTKNGIFINQSKYCKELLKRFGMENAKSMATPMSTTCYLDKDEVGKSIDVKK 680

Query: 207 YRGMIGSLLYLTASRPDIMFSI 228
           YRGMIGSLLYL+ASRPDIMFS+
Sbjct: 681 YRGMIGSLLYLSASRPDIMFSV 699

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BLAST of CmoCh20G010230 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 65.5 bits (158), Expect = 5.4e-11
Identity = 38/92 (41.30%), Postives = 49/92 (53.26%), Query Frame = 1


Query: 136 FEMSMMGELSFFLGLQIKHLKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKD 195
           F++  +G L +FLGL+I     GI I Q KY  DLL      G K +  PM  S      
Sbjct: 308 FKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAH 367

Query: 196 EKGKSVDIKAYRGMIGSLLYLTASRPDIMFSI 228
             G  VD KAYR +IG L+YL  +R DI F++
Sbjct: 368 SGGDFVDAKAYRRLIGRLMYLQITRLDISFAV 399

[Close]

BLAST of CmoCh20G010230 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 62.0 bits (149), Expect = 6.0e-10
Identity = 35/97 (36.08%), Postives = 55/97 (56.70%), Query Frame = 1


Query: 134 SEFEMSMMGELSFFLGLQIKHLKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLD 193
           S F M  +G + +FLG+QIK   +G+F++Q KY + +L     N G +   PMST   L 
Sbjct: 29  STFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILN----NAGMLDCKPMSTPLPLK 88

Query: 194 KDEK---GKSVDIKAYRGMIGSLLYLTASRPDIMFSI 228
            +      K  D   +R ++G+L YLT +RPDI +++
Sbjct: 89  LNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAV 121

[Close]

BLAST of CmoCh20G010230 vs. NCBI nr
Match: gi|955383193|ref|XP_014626046.1| (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Glycine max])

HSP 1 Score: 179.9 bits (455), Expect = 5.6e-42
Identity = 104/199 (52.26%), Postives = 129/199 (64.82%), Query Frame = 1


Query: 30  NEDEQEDEQEDEVCLKASKKNKWYLDSGCSRHMTGNPSKFVNLSKKDGGLVTFGDNKKGK 89
           N +  EDE           K KWY+DSGCS+HMTG+ SKF  +S K  G VT+GDN +GK
Sbjct: 4   NHESDEDEP---------LKKKWYIDSGCSKHMTGDASKFTTISPKKSGHVTYGDNNRGK 63

Query: 90  IIGKGTIERNFGD-LLVSDNDKEIVTSKEEMSLKEEGSSSMPKEWSEFEMSMMGELSFFL 149
           +     I++   D LLV     +I+      SL  E S +M    SEFEMSMMG+L++FL
Sbjct: 64  MDATLFIKKKDDDILLVQIYVDDIIFGSTNDSLCNEFSLNMQ---SEFEMSMMGDLNYFL 123

Query: 150 GLQIKHLKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKAYRG 209
           GLQIK    GIF+NQ KY K+L+KRF     K   TPMST   LDKDE G+S+D+K YRG
Sbjct: 124 GLQIKQTNEGIFVNQAKYCKELIKRFGMETSKHMATPMSTGCYLDKDESGQSIDMKQYRG 183

Query: 210 MIGSLLYLTASRPDIMFSI 228
           MIGSLL+L+ASRPDIMFS+
Sbjct: 184 MIGSLLFLSASRPDIMFSV 190

[Close]

BLAST of CmoCh20G010230 vs. NCBI nr
Match: gi|147787812|emb|CAN73857.1| (hypothetical protein VITISV_037898 [Vitis vinifera])

HSP 1 Score: 153.3 bits (386), Expect = 5.6e-34
Identity = 98/205 (47.80%), Postives = 118/205 (57.56%), Query Frame = 1


Query: 3   ATWDDSDESASGSDE-EVANFCFMAHSDNEDEQEDEQEDEVCLKASKKNKWYLDSGCSRH 62
           ATW +S ES+    E EVAN CFM        + DE +D      SKK+KW+LDSGCSRH
Sbjct: 351 ATWSESKESSEEEKEKEVANMCFM--------EIDELDD-----GSKKDKWFLDSGCSRH 410

Query: 63  MTGNPSKFVNLSKKDGGLVTFGDNKKGKIIGKGTIERNFGDLLVSDNDKEIVTSKEEMSL 122
           M G+ SKF  L+KK+GG VTF DN   +IIG+G IE  F   +                 
Sbjct: 411 MIGDESKFAFLTKKNGGYVTFEDNATRRIIGQGNIE--FFKCM----------------- 470

Query: 123 KEEGSSSMPKEWSEFEMSMMGELSFFLGLQIKHLKNGIFINQEKYTKDLLKRFKFNGGKI 182
                       SEFEMSM+GEL+FF+GLQI  LK   FINQ KY +DLLKRF     K 
Sbjct: 471 -----------HSEFEMSMVGELNFFIGLQINQLKERTFINQAKYIRDLLKRFNMEESKT 512

Query: 183 ARTPMSTSTKLDKDEKGKSVDIKAY 207
            +TPMS+S KLDKDEKG+  D  +Y
Sbjct: 531 MKTPMSSSIKLDKDEKGRHRDEVSY 512

[Close]

BLAST of CmoCh20G010230 vs. NCBI nr
Match: gi|255678729|dbj|BAH94473.1| (Os09g0272800 [Oryza sativa Japonica Group])

HSP 1 Score: 152.9 bits (385), Expect = 7.3e-34
Identity = 106/252 (42.06%), Postives = 139/252 (55.16%), Query Frame = 1


Query: 10  ESASGSDEE---VANFCFMAHSDNEDEQEDEQEDEVCLKASKKNKWYLDSGCSRHMTGNP 69
           +  SG D++   V++ CFM   +++ E ED +     L A K+N W +DSGCSRHMTG+ 
Sbjct: 347 DGESGDDDKGKNVSDVCFMVRGESDTEYEDNE----ALVARKENVWIVDSGCSRHMTGDK 406

Query: 70  SKFVNLSKKDGG-LVTFGDNKKGKIIGKGTIE------RNFGDLLVSDNDKEIVTSKEEM 129
           + F +L K      + F +     ++  G ++      R F D    D+D E  TS    
Sbjct: 407 NCFSSLKKASKTESIVFANASTSAVVATGLVKVQGEDGRIFEDESDYDHDDENSTSTSTE 466

Query: 130 SLKEEGSSSM-----------PKEW------------SEFEMSMMGELSFFLGLQIKHLK 189
           +  E GS+S            P E              EFEMSMMGELS+FLGLQIK   
Sbjct: 467 T--ERGSTSEVAAPLHNQRRHPPEQIIGNIDFAETMRREFEMSMMGELSYFLGLQIKQTP 526

Query: 190 NGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKAYRGMIGSLLYL 229
            G F++Q KYTKDLL+RFK    K   TP+ ++  LD DE G++VD K YR MIGSLLYL
Sbjct: 527 QGTFVHQTKYTKDLLRRFKMENCKQISTPIGSTVVLDPDEDGEAVDQKEYRSMIGSLLYL 586

[Close]

BLAST of CmoCh20G010230 vs. NCBI nr
Match: gi|147765843|emb|CAN60184.1| (hypothetical protein VITISV_022257 [Vitis vinifera])

HSP 1 Score: 151.4 bits (381), Expect = 2.1e-33
Identity = 108/244 (44.26%), Postives = 135/244 (55.33%), Query Frame = 1


Query: 3   ATWDDSDESASGS--DEEVANFCFM-------AHSDNEDEQEDEQEDE------------ 62
           ATW +S++ +S    ++EVAN  FM       A+S+  DE   +  +E            
Sbjct: 2   ATWSESEDESSEEKKNKEVANMYFMTIDELDEANSNLGDEDIHDAFEELYENFEKLSLKN 61

Query: 63  VCLK------------ASKKNKWYLDSGCSRHMTGNPSKFVNLSKKDGGLVTFGDNKKGK 122
           + LK             SKK+KW LDSGCSRHMTG+ SKF  L+KK GG V+FGDN K +
Sbjct: 62  ISLKKKVQQLEKELGEGSKKDKWLLDSGCSRHMTGDESKFAFLTKKKGGYVSFGDNAKRR 121

Query: 123 IIGKGTIERNFGDL------LVSDNDK--------EIVTSKEEMSLKEEGSSSMPKEWSE 182
           IIG+G I    G +         +ND         +I+     +S+ EE S  M    SE
Sbjct: 122 IIGQGNIGFKMGKIDTTLFIKTKENDMXLVQIYVDDIIFGVTNVSICEEFSKCMH---SE 181

Query: 183 FEMSMMGELSFFLGLQIKHLKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKD 200
           FEMSMMGEL+FFLGLQIK LK G FINQ  Y  DLLKRF     K  +TPMS+S KLDKD
Sbjct: 182 FEMSMMGELNFFLGLQIKQLKEGTFINQANYIGDLLKRFNMEEAKTMKTPMSSSIKLDKD 241

[Close]

BLAST of CmoCh20G010230 vs. NCBI nr
Match: gi|147836442|emb|CAN70894.1| (hypothetical protein VITISV_039827 [Vitis vinifera])

HSP 1 Score: 144.1 bits (362), Expect = 3.4e-31
Identity = 81/126 (64.29%), Postives = 91/126 (72.22%), Query Frame = 1


Query: 103 LLVSDNDKEIVTSKEEMSLKEEGSSSMPKEWSEFEMSMMGELSFFLGLQIKHLKNGIFIN 162
           LLV     +I+     +SL EE S  M    SEFEMSMMGEL+FFLGLQIK L  G FIN
Sbjct: 65  LLVQIYVDDIIFGATNVSLHEEFSKCMH---SEFEMSMMGELNFFLGLQIKQLNEGTFIN 124

Query: 163 QEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKAYRGMIGSLLYLTASRPD 222
           Q KY +DLLKRF     K  +TPMS+S KLDKDEKGKS+D   YRGMIGSLLYLTASRPD
Sbjct: 125 QAKYIRDLLKRFNMEEAKTMKTPMSSSIKLDKDEKGKSIDSTMYRGMIGSLLYLTASRPD 184

Query: 223 IMFSIL 229
           IM++IL
Sbjct: 185 IMYNIL 187

The following BLAST results are available for this feature:

BLAST of CmoCh20G010230 vs. Swiss-Prot


Match Name	E-value	Identity	Description
M810_ARATH	1.1e-08	36.08	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg0...	[more]
POLX_TOBAC	8.4e-06	28.82	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of CmoCh20G010230 vs. TrEMBL


Match Name	E-value	Identity	Description
A5AWL4_VITVI	3.9e-34	47.80	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037898 PE=4 SV=1	[more]
C7J6P4_ORYSJ	5.1e-34	42.06	Os09g0272800 protein OS=Oryza sativa subsp. japonica GN=Os09g0272800 PE=4 SV=1	[more]
A5AFZ1_VITVI	1.5e-33	44.26	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022257 PE=4 SV=1	[more]
A5C529_VITVI	2.4e-31	64.29	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039827 PE=4 SV=1	[more]
A0A151TIF5_CAJCA	1.2e-30	58.45	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]

BLAST of CmoCh20G010230 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23160.1	5.4e-11	41.30	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	6.0e-10	36.08	ATMG00810.1 DNA/RNA polymerases superfamily protein	[more]

BLAST of CmoCh20G010230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|955383193\|ref\|XP_014626046.1\|	5.6e-42	52.26	PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Glycine max]	[more]
gi\|147787812\|emb\|CAN73857.1\|	5.6e-34	47.80	hypothetical protein VITISV_037898 [Vitis vinifera]	[more]
gi\|255678729\|dbj\|BAH94473.1\|	7.3e-34	42.06	Os09g0272800 [Oryza sativa Japonica Group]	[more]
gi\|147765843\|emb\|CAN60184.1\|	2.1e-33	44.26	hypothetical protein VITISV_022257 [Vitis vinifera]	[more]
gi\|147836442\|emb\|CAN70894.1\|	3.4e-31	64.29	hypothetical protein VITISV_039827 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G010230.1	CmoCh20G010230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 134..187 score: 1.1
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 134..227 score: 8.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh20G010230	Wax gourd	cmowgoB0692
CmoCh20G010230	Cucurbita maxima (Rimu)	cmacmoB551
CmoCh20G010230	Wild cucumber (PI 183967)	cmocpiB535
CmoCh20G010230	Cucumber (Chinese Long) v2	cmocuB529
CmoCh20G010230	Watermelon (Charleston Gray)	cmowcgB489
CmoCh20G010230	Watermelon (97103) v1	cmowmB519
CmoCh20G010230	Cucurbita pepo (Zucchini)	cmocpeB517
CmoCh20G010230	Bottle gourd (USVL1VR-Ls)	cmolsiB488
CmoCh20G010230	Bottle gourd (USVL1VR-Ls)	cmolsiB496
CmoCh20G010230	Cucumber (Gy14) v2	cgybcmoB208
CmoCh20G010230	Cucumber (Chinese Long) v3	cmocucB0636
CmoCh20G010230	Watermelon (97103) v2	cmowmbB556