CmoCh20G010220 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh20G010220
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTransposon Ty1-H Gag-Pol polyprotein
LocationCmo_Chr20 : 7136645 .. 7140390 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGCTACTTGGGATGATAGTGATGAAAGTGCAAGTGGAAGTGATGAAGAAGTAGCAAATTTTTGCTTCATGGCTCATAGTGACAAAGAGGATGAACAAGAAGATGAACAAGAAGATGAGGTAACTCTTGAATCTCTTTCTTATCATGAATTATTTAAACTTGTTGATGAGATGACAATTGATTTAGAAAAACTTAGTTCAAAGTATGTTGTGCTTAAAAAGAAATATAAGACTTCCATTATTGAAAATAAGTCTTTACTAAATGAAATTTCTTGCTTAAAAGAGAAGGATCATAATATCGTTAAAATTGATGTACCTTGTGAAAAGCATGTATTTGATTGTGATGAGAAAAATGCATTAATTGATAAAGTCAAGTCTCTCGAGCATGATTGTTGTGAAAAAGATAAATTAATTAAATTGCTCAAAGAAAATGAATCAAATAATTTGCAAGAACTTGGTAGGGCTAAGGAATCTATTAAAATGTTAACAATAGGTGCTCAAAAATTAGATAAAATACTTGAAGGAGGTAAGTCATATGGTGATAAAAGAGGATTAGGCTATATTGATGAATGTTCTACACCTTCAAGTTCTAAAACAATATTTGTTAAAGCATCCCCTATCTTGTCTAAATCTAACACATGTAAATTTGTATCTAAGTATGATAAATCTAGATTTGTGCCTATATGTCATTATTGTGGTGTTGAAGGTCATATTAGACCTAAGTGCTTTAAATTGAAAAATTCTCAAAATATTCATTTAGGAAGAAAAGTTTCTCAAAATACAAAGTTTAACAATGTTTTAGAAAATAATTTTTCGAATAAAAATAGAATACACAAATTTAGTCCAAGAAATAAATTCTTGCATAATGTCGTTTGTTTCTCGTGTGGTAAGTTTGGACATAAAGATTATTCTTGTTACTTATCTAAATACAATGTCTTTAATATGAATGCAAATATGAAATGGATTCCTAAATTTGTGAATACTAACTTTCTAGGACCCAAACAAGTATGGGTACCAAAAGGTCAATTTTGAATATCTTTGTTTTTAGGTTTGTTTGAAAGCCTCCAAGAAAAATAAGTGGTACTTGGATAGTGGTTGCTCAAGACACATGACGGGTAATCCATCCAAGTTTGTGAATCTTTCCAAGAAGGATGGTGGCTTAGTAACCTTTGGTGATAACAAGAAGGGTAAAATAATTGGTAAGGGTACTATAGGTAATGACTCTTGTACTCTCATTGAAAATGTATTGTTAGTTGATGGTTTAAAGCATGACTTACTTAGCATTAGTCAATTATGTGATAAAGGTTTTAGAGTTGTATTTGATAAGAATAATTGCATAATTGAAAATGCTAGTGATAGAAAAGTTTTGTTTGTAGGAAATAGAGACGATAATGTGTATACTATTGATTTGAATGATTGTCCTACAAATGATAAATGTCTTTCGGTTTTGCTTGATAACTCTTGGCTATGGCATAGAAGACTAGGACATGCTAGTATGTACTTGATTTCAAATATTTCAAAAAATTCATTAGTTAGAGGTCTTCCTCAACTTAAATTTGAAAAAGATAAAATTTGTGACGCTTGTCAAATGGGTAAGCAAACTAAGTCTTCTTTCAAATCTAAAAATATGATTTCTACTACTAGACCTCTTCAACTACTCCATATGGACTTATTTGGCCCTTCTAAAATAGCTAGTTATGGAGGAAATTATTATGCTTTTGTGATAGTGGATGATTTTTCAAGATTTACTTGGGTTTTGATGATAAAACATAAGAATGATGTTTTGAAAAGATTTGCTAGTTTTGTAAAAAGAGTTCAAAATGAAAAAGGGTTTTTAATTACTAAAATTAGGAGTGACCATGGAGGAGAATTTAACAGTGTTGCCTTTGAAAAATTTTGTGAGGATAATGGTTTTTCTCATGACTTCTCCTCTCCAAGGACTCCTCAACAAAACGGTGTGGTTGAAAGGAAAAATCGTACTTTACAAGAATTTGCTAGATCAATGTTAAATGAGTATGATTTACCTAAATATTTTTGGGCGGAAGCCGTTAATACCGCTTGTTATATTTTAAATAGAGTTTTAATTAGACCTTCATTAAATAAAACTCCTTATGAACTTTGGCATAACAAAATTCCAAATGTTGGGTATTTCAAAGTTTTTGGTTGTAAATGTTTTATTTTGAACAACAAAGAAAAGCTTGGAAAGTTTGATTCAAAAACGGATATTGGTATTTTTCTTGGCTATTCATCTACTAGTAAAGCTTATAGAATTTTCAATAAGAGAACTTTAGTTATTGAAGAATCTATGCATGTGGTATTTGATGAATCTTGCAATAATATTTCTAATGAGTCTATTTGTAGTGATGATTTAGAAAGAAATTTTGGAGATTTACTCGTTAGTGACAACGGCAAAGAAATTGTTACGAGTAAAGAAGAGGTGAGCTTAAAGGAAGAAGGTTCTTCATCAATGCCAAAAGAATGGAGGTATGCCTTGTCTCATCCCAAAGACTTGATTCTTGGTGATCTCGAACAAGGTGTGAAAACTCGCTCTTCTATTAATTTATTTAATAATCTTGCTTTTGTTTCTCAAATTGAACCAAAAAGTCTTAAGGATGCCGAAAATGATGAGTTTTGGATTTTAGCCATGCAAGAAGAGCTAAATCAATTTGAGAGGAACAAAGTTTGGGAATTAGTCCCTAGGCCATCTAATACTTCTATTATTGGAACCAAATGGGTTTTTAGAAATAAAATGGATGAAAATGGGAATATCATGAGAAATAAAGCTAGGCTTGTAGCTCAAGGTTATTGTCAAGAGGAAGGCATAGATTATGAAGAAACTTTTGCACCCGTTGCTAGATTAGAAGCTATTAGAATGTTACTTGCTTTTGCTTCTTACAAAAATTTTGTATTATATCAAATGGATGTGAAAAGTGCATTTTTGAATGGTTATATTATGGAGGAAGTTTATGTAGAACAACCTCCCGGATTTGAAAATGTAGAATTTCCTCATCATGTCTATAAGTTGAAAAAGGCTCTTTATGGCTTAAAACAAGCTCCAAGAGCTTGGTATGATAGACTTAGTAATTTTCTTATTGGGAATGATTTTAAAATGGGCAAACTCGACACTACACTCTTTATTAAGATTAAAGAAAACGATATGCTATTAGTGCAAATATATGTGGATGATATCATATTTGGTTCTACTAATCCTTCTTTATGTGAAGAATTTTCTAAATGTATGCATAGTGAGTTTGAGATGAGTATGATGGGAGAACTCAGTTTCTTTCTTGGACTTCAAATCAAACAACTCAAGAATGGTATCTTCATCAATCAAGAGAAATACACTAAAGATTTGCTCAAAAGATTCAAGTTCAATGGAGGTAAGATTGCAAGAACTCCCATGAGCACATCCACTAAGCTTGACAAGGATGAAAAAGGTAAAAGTGTGGATATTAAAGCTTATCGAGGTATGATTGGATCTTTACTTTACTTGACCGCTAGTAGACCCGATATTATGTTTAGTGTATGTCTTTGTGCTAGATTTCAATCTTGTCCTAAGGAATCTCATTTACATGCCGTTAAGAGAATATTTAAATATTTGCTTGGAACTATTGATCTAGGATTGTGGTATCCTAGAAATGTTGAATTTAAATTGGTAGGATATTCTGATGCGGATTTTGCCGGAAGCTTACTTGATCGTAAAAGTACTAGTGGAACTTGTCAATTTCTTGGTAGTTCCTTAG

mRNA sequence

ATGAAGGCTACTTGGGATGATAGTGATGAAAGTGCAAGTGGAAGTGATGAAGAAGTAGCAAATTTTTGCTTCATGGCTCATAGTGACAAAGAGGATGAACAAGAAGATGAACAAGAAGATGAGGTTTGTTTGAAAGCCTCCAAGAAAAATAAGTGGTACTTGGATAGTGGTTGCTCAAGACACATGACGGGTAATCCATCCAAGTTTGTGAATCTTTCCAAGAAGGATGGTGGCTTAGTAACCTTTGGTGATAACAAGAAGGGTAAAATAATTGGTAAGGGTACTATAGAAAGAAATTTTGGAGATTTACTCGTTAGTGACAACGGCAAAGAAATTGTTACGAGTAAAGAAGAGGTGAGCTTAAAGGAAGAAGGTTCTTCATCAATGCCAAAAGAATGGAGGTATGCCTTGTCTCATCCCAAAGACTTGATTCTTGGTGATCTCGAACAAGGTGTGAAAACTCGCTCTTCTATTAATTTATTTAATAATCTTGCTTTTGTTTCTCAAATTGAACCAAAAAGTCTTAAGGATGCCGAAAATGATGAGTTTTGGATTTTAGCCATGCAAGAAGAGCTAAATCAATTTGAGAGGAACAAAGTTTGGGAATTAGTCCCTAGGCCATCTAATACTTCTATTATTGGAACCAAATGGGTTTTTAGAAATAAAATGGATGAAAATGGGAATATCATGAGAAATAAAGCTAGGCTTGTAGCTCAAGGTTATTGTCAAGAGGAAGGCATAGATTATGAAGAAACTTTTGCACCCGTTGCTAGATTAGAAGCTATTAGAATGTTACTTGCTTTTGCTTCTTACAAAAATTTTGTATTATATCAAATGGATGTGAAAAGTGCATTTTTGAATGGTTATATTATGGAGGAAGTTTATGTAGAACAACCTCCCGGATTTGAAAATGTAGAATTTCCTCATCATGTCTATAAGTTGAAAAAGGCTCTTTATGGCTTAAAACAAGCTCCAAGAGCTTGTGAGTTTGAGATGAGTATGATGGGAGAACTCAGTTTCTTTCTTGGACTTCAAATCAAACAACTCAAGAATGGTATCTTCATCAATCAAGAGAAATACACTAAAGATTTGCTCAAAAGATTCAAGTTCAATGGAGGTAAGATTGCAAGAACTCCCATGAGCACATCCACTAAGCTTGACAAGGATGAAAAAGGTAAAAGTGTGGATATTAAAGCTTATCGAGGTATGATTGGATCTTTACTTTACTTGACCGCTAGTAGACCCGATATTATGTTTAGTGATATTCTGATGCGGATTTTGCCGGAAGCTTACTTGATCGTAAAAGTACTAGTGGAACTTGTCAATTTCTTGGTAGTTCCTTAG

Coding sequence (CDS)

ATGAAGGCTACTTGGGATGATAGTGATGAAAGTGCAAGTGGAAGTGATGAAGAAGTAGCAAATTTTTGCTTCATGGCTCATAGTGACAAAGAGGATGAACAAGAAGATGAACAAGAAGATGAGGTTTGTTTGAAAGCCTCCAAGAAAAATAAGTGGTACTTGGATAGTGGTTGCTCAAGACACATGACGGGTAATCCATCCAAGTTTGTGAATCTTTCCAAGAAGGATGGTGGCTTAGTAACCTTTGGTGATAACAAGAAGGGTAAAATAATTGGTAAGGGTACTATAGAAAGAAATTTTGGAGATTTACTCGTTAGTGACAACGGCAAAGAAATTGTTACGAGTAAAGAAGAGGTGAGCTTAAAGGAAGAAGGTTCTTCATCAATGCCAAAAGAATGGAGGTATGCCTTGTCTCATCCCAAAGACTTGATTCTTGGTGATCTCGAACAAGGTGTGAAAACTCGCTCTTCTATTAATTTATTTAATAATCTTGCTTTTGTTTCTCAAATTGAACCAAAAAGTCTTAAGGATGCCGAAAATGATGAGTTTTGGATTTTAGCCATGCAAGAAGAGCTAAATCAATTTGAGAGGAACAAAGTTTGGGAATTAGTCCCTAGGCCATCTAATACTTCTATTATTGGAACCAAATGGGTTTTTAGAAATAAAATGGATGAAAATGGGAATATCATGAGAAATAAAGCTAGGCTTGTAGCTCAAGGTTATTGTCAAGAGGAAGGCATAGATTATGAAGAAACTTTTGCACCCGTTGCTAGATTAGAAGCTATTAGAATGTTACTTGCTTTTGCTTCTTACAAAAATTTTGTATTATATCAAATGGATGTGAAAAGTGCATTTTTGAATGGTTATATTATGGAGGAAGTTTATGTAGAACAACCTCCCGGATTTGAAAATGTAGAATTTCCTCATCATGTCTATAAGTTGAAAAAGGCTCTTTATGGCTTAAAACAAGCTCCAAGAGCTTGTGAGTTTGAGATGAGTATGATGGGAGAACTCAGTTTCTTTCTTGGACTTCAAATCAAACAACTCAAGAATGGTATCTTCATCAATCAAGAGAAATACACTAAAGATTTGCTCAAAAGATTCAAGTTCAATGGAGGTAAGATTGCAAGAACTCCCATGAGCACATCCACTAAGCTTGACAAGGATGAAAAAGGTAAAAGTGTGGATATTAAAGCTTATCGAGGTATGATTGGATCTTTACTTTACTTGACCGCTAGTAGACCCGATATTATGTTTAGTGATATTCTGATGCGGATTTTGCCGGAAGCTTACTTGATCGTAAAAGTACTAGTGGAACTTGTCAATTTCTTGGTAGTTCCTTAG
Homology
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BLAST of CmoCh20G010220 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 136.7 bits (343), Expect = 6.1e-31
Identity = 72/149 (48.32%), Postives = 97/149 (65.10%), Query Frame = 1 

Query: 184  WILAMQEELNQFERNKVWELVPRPSNTSIIGTKWVFRNKMDENGNIMRNKARLVAQGYCQ 243
            W  A+  ELN  + N  W +  RP N +I+ ++WVF  K +E GN +R KARLVA+G+ Q
Sbjct: 906  WEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQ 965

Query: 244  EEGIDYEETFAPVARLEAIRMLLAFASYKNFVLYQMDVKSAFLNGYIMEEVYVEQPPGFE 303
            +  IDYEETFAPVAR+ + R +L+     N  ++QMDVK+AFLNG + EE+Y+  P G  
Sbjct: 966  KYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGIS 1025

Query: 304  NVEFPHHVYKLKKALYGLKQAPRACEFEM 333
                  +V KL KA+YGLKQA R C FE+
Sbjct: 1026 CNS--DNVCKLNKAIYGLKQAAR-CWFEV 1051

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BLAST of CmoCh20G010220 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.4e-30
Identity = 86/237 (36.29%), Postives = 133/237 (56.12%), Query Frame = 1 

Query: 171  EPKSLKDA----ENDEFWILAMQEELNQFERNKVWELVPRPSNTSIIGTKWVFRNKMDEN 230
            EP+SLK+     E ++  + AMQEE+   ++N  ++LV  P     +  KWVF+ K D +
Sbjct: 810  EPESLKEVLSHPEKNQL-MKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGD 869

Query: 231  GNIMRNKARLVAQGYCQEEGIDYEETFAPVARLEAIRMLLAFASYKNFVLYQMDVKSAFL 290
              ++R KARLV +G+ Q++GID++E F+PV ++ +IR +L+ A+  +  + Q+DVK+AFL
Sbjct: 870  CKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFL 929

Query: 291  NGYIMEEVYVEQPPGFENVEFPHHVYKLKKALYGLKQAPRACEFEMSMMGELSFFLG--- 350
            +G + EE+Y+EQP GFE     H V KL K+LYGLKQAPR    +     +   +L    
Sbjct: 930  HGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYS 989

Query: 351  ---LQIKQLKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDI 398
               +  K+     FI    Y  D+L   K + G IA+     S   D  + G +  I
Sbjct: 990  DPCVYFKRFSENNFIILLLYVDDMLIVGK-DKGLIAKLKGDLSKSFDMKDLGPAQQI 1044

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BLAST of CmoCh20G010220 vs. Swiss-Prot
Match: M820_ARATH (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 5.7e-21
Identity = 57/122 (46.72%), Postives = 77/122 (63.11%), Query Frame = 1 

Query: 153 KTRSSINLFN---NLAFVSQI--EPKSLKDAENDEFWILAMQEELNQFERNKVWELVPRP 212
           ++++ IN  N   +L   + I  EPKS+  A  D  W  AMQEEL+   RNK W LVP P
Sbjct: 4   RSKAGINKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPP 63

Query: 213 SNTSIIGTKWVFRNKMDENGNIMRNKARLVAQGYCQEEGIDYEETFAPVARLEAIRMLLA 270
            N +I+G KWVF+ K+  +G + R KARLVA+G+ QEEGI + ET++PV R   IR +L 
Sbjct: 64  VNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILN 123

[Close]
BLAST of CmoCh20G010220 vs. Swiss-Prot
Match: YE12B_YEAST (Transposon Ty1-ER2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-ER2 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.0e-09
Identity = 49/163 (30.06%), Postives = 81/163 (49.69%), Query Frame = 1 

Query: 176  KDAENDEFWILAMQEELNQFERNKVW---------ELVPRPSNTSIIGTKWVFRNKMDEN 235
            KD +  E +I A  +E+NQ  + K W         E+ P+     +I + ++F  K D  
Sbjct: 1242 KDIKEKEKYIQAYHKEVNQLLKMKTWDTDRYYDRKEIDPK----RVINSMFIFNRKRDGT 1301

Query: 236  GNIMRNKARLVAQGYCQEEGIDYEETFAPVARLE-----AIRMLLAFASYKNFVLYQMDV 295
                 +KAR VA+G      I + +T+ P  +       A+   L+ A   N+ + Q+D+
Sbjct: 1302 -----HKARFVARG-----DIQHPDTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDI 1361

Query: 296  KSAFLNGYIMEEVYVEQPPGFENVEFPHHVYKLKKALYGLKQA 325
             SA+L   I EE+Y+  PP   ++     + +LKK+LYGLKQ+
Sbjct: 1362 SSAYLYADIKEELYIRPPP---HLGMNDKLIRLKKSLYGLKQS 1387

[Close]
BLAST of CmoCh20G010220 vs. Swiss-Prot
Match: YM14B_YEAST (Transposon Ty1-MR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-MR2 PE=3 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 5.0e-09
Identity = 49/163 (30.06%), Postives = 81/163 (49.69%), Query Frame = 1 

Query: 176  KDAENDEFWILAMQEELNQFERNKVW---------ELVPRPSNTSIIGTKWVFRNKMDEN 235
            KD +  E +I A  +E+NQ  + K W         E+ P+     +I + ++F  K D  
Sbjct: 1242 KDIKEKEKYIQAYHKEVNQLLKMKTWDTDRYYDRKEIDPK----RVINSMFIFNRKRDGT 1301

Query: 236  GNIMRNKARLVAQGYCQEEGIDYEETFAPVARLE-----AIRMLLAFASYKNFVLYQMDV 295
                 +KAR VA+G      I + +T+ P  +       A+   L+ A   N+ + Q+D+
Sbjct: 1302 -----HKARFVARG-----DIQHPDTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDI 1361

Query: 296  KSAFLNGYIMEEVYVEQPPGFENVEFPHHVYKLKKALYGLKQA 325
             SA+L   I EE+Y+  PP   ++     + +LKK+LYGLKQ+
Sbjct: 1362 SSAYLYADIKEELYIRPPP---HLGMNDKLIRLKKSLYGLKQS 1387

[Close]
BLAST of CmoCh20G010220 vs. TrEMBL
Match: A5AVS9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021518 PE=4 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 4.1e-119
Identity = 214/298 (71.81%), Postives = 251/298 (84.23%), Query Frame = 1 

Query: 124 EGSSSMPKEWRYALSHPKDLILGDLEQGVKTRSSI-NLFNNLAFVSQIEPKSLKDAENDE 183
           E S  +PK+W++ ++HP+D I+G+    V+TRSS+ N+ NNLAF+S IEPK++KDA  DE
Sbjct: 21  ESSQDLPKDWKFVINHPQDQIIGNPSSRVRTRSSLRNICNNLAFISHIEPKNIKDALVDE 80

Query: 184 FWILAMQEELNQFERNKVWELVPRPSNTSIIGTKWVFRNKMDENGNIMRNKARLVAQGYC 243
            W+  MQEELNQFER++VWELVPRP N S+IGT+WVFR KMDENG I+RNKARLVAQG+ 
Sbjct: 81  NWMTVMQEELNQFERSEVWELVPRPHNQSVIGTRWVFRIKMDENGIIIRNKARLVAQGFN 140

Query: 244 QEEGIDYEETFAPVARLEAIRMLLAFASYKNFVLYQMDVKSAFLNGYIMEEVYVEQPPGF 303
           QEEGIDYEETFAPVARLEAIRMLLAFA +K+FVLYQMDVKSAFLNG+I EEVYVEQPP F
Sbjct: 141 QEEGIDYEETFAPVARLEAIRMLLAFACFKDFVLYQMDVKSAFLNGFINEEVYVEQPPSF 200

Query: 304 ENVEFPHHVYKLKKALYGLKQAPRACEFEMSMMGELSFFLGLQIKQLKNGIFINQEKYTK 363
           ++  FP+HV++LK ALYGLKQAPRACEFEMSMMGEL+FFLGLQIKQLK G FINQ KY +
Sbjct: 201 QSFNFPNHVFRLKNALYGLKQAPRACEFEMSMMGELNFFLGLQIKQLKEGTFINQAKYIR 260

Query: 364 DLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKAYRGMIGSLLYLTASRPDIMFS 421
           D LKRF     K  +TPMS+S KLD DEKGK ++   YRGMIGSLL LTASRPDIM+S
Sbjct: 261 DPLKRFNMEEAKTMKTPMSSSIKLDMDEKGKPINSTMYRGMIGSLLNLTASRPDIMYS 318

[Close]
BLAST of CmoCh20G010220 vs. TrEMBL
Match: A5AH07_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035911 PE=4 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 4.0e-114
Identity = 221/334 (66.17%), Postives = 260/334 (77.84%), Query Frame = 1 

Query: 107 DNGKEIVTSKEEVSLK--EEGSSSMPKEWRYALSHP-----KDLILGDLEQGVKTRSSI- 166
           D G E    K ++  K  +E S   PK+    L+ P     +D I+G+   GV+TRSS+ 
Sbjct: 27  DLGLETFMGKLQIEDKRQQEESGEDPKKEESPLALPPPQQVQDQIIGNPSSGVRTRSSLK 86

Query: 167 NLFNNLAFVSQIEPKSLKDAENDEFWILAMQEELNQFERNKVWELVPRPSNTSIIGTKWV 226
           N+ NNLAF+SQ EPK++KDA  DE W++AMQEELN+FER++VWELVPRPSN S+IGTKWV
Sbjct: 87  NICNNLAFISQTEPKNIKDAIVDENWMIAMQEELNKFERSEVWELVPRPSNQSVIGTKWV 146

Query: 227 FRNKMDENGNIMRNKARLVAQGYCQEEGIDYEETFAPVARLEAIRMLLAFASYKNFVLYQ 286
           FRNKM+EN  I+RNKARLVAQGY QEEGIDYE+TFAPVARLEAIRML AFA +K+F+LYQ
Sbjct: 147 FRNKMNENDIIVRNKARLVAQGYNQEEGIDYEKTFAPVARLEAIRMLRAFACFKDFILYQ 206

Query: 287 MDVKSAFLNGYIMEEVYVEQPPGFENVEFPHHVYKLKKALYGLKQAPRA----------- 346
           MDVKSAFLNG+I EEVYVEQPPGF++  FP+HV+KLKK LYGLKQAP+A           
Sbjct: 207 MDVKSAFLNGFINEEVYVEQPPGFQSFNFPNHVFKLKKTLYGLKQAPKAWYERLNFSKCM 266

Query: 347 -CEFEMSMMGELSFFLGLQIKQLKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKL 406
             EFEMSMMGEL+FFLGLQIKQLK G FINQ KY KDLLKRF     K+ +TPMS+S KL
Sbjct: 267 HSEFEMSMMGELNFFLGLQIKQLKEGTFINQAKYIKDLLKRFNMEEAKVMKTPMSSSIKL 326

Query: 407 DKDEKGKSVDIKAYRGMIGSLLYLTASRPDIMFS 421
           D DE+GKS+D   YRGMIGSLLYLTASRPD M+S
Sbjct: 327 DMDERGKSIDSTMYRGMIGSLLYLTASRPDFMYS 360

[Close]
BLAST of CmoCh20G010220 vs. TrEMBL
Match: A5C4X7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018629 PE=4 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 9.6e-108
Identity = 201/301 (66.78%), Postives = 243/301 (80.73%), Query Frame = 1 

Query: 124 EGSSSMPKEWRYALSHPKDLILGDLEQGVKTRSSI-NLFNNLAFVSQIEPKSLKDAENDE 183
           E S  +PKE ++ ++HP+D I+G+   GV+TRSS+ N+FNNLAF+SQIEPK++ +  +DE
Sbjct: 37  ESSQDLPKELKFVINHPQDQIIGNPSSGVRTRSSLRNIFNNLAFISQIEPKNINNVLDDE 96

Query: 184 FWILAMQEELNQFERNKVWELVPRPSNTSIIGTKWVFRNKMDENGNIMRNKARLVAQGYC 243
            W++AMQEELNQFER++VWEL PRPSN S+IGT+WVFRNK+DENG I+RNKARLVAQG+ 
Sbjct: 97  NWMIAMQEELNQFERSEVWELAPRPSNQSVIGTRWVFRNKIDENGIIVRNKARLVAQGFN 156

Query: 244 QEEGIDYEETFAPVARLEAIRMLLAFASYKNFVLYQMDVKSAFLNGYIMEEVYVEQPPGF 303
           QE+GIDYEETFAPV RLEAIRMLLAFA +K+FVLYQM VK+AFLNG+I EEVYVEQPPGF
Sbjct: 157 QEKGIDYEETFAPVVRLEAIRMLLAFACFKDFVLYQMYVKNAFLNGFINEEVYVEQPPGF 216

Query: 304 ENVEFPHHVYKLKKALYGLKQAPRACEFEMSMMGELSFFLGLQIKQLKNGIFINQEKYTK 363
           ++  FP+HV+KLK+ALYGLKQAPRA    +S      F L +   QLK G FINQ KY +
Sbjct: 217 QSFNFPNHVFKLKRALYGLKQAPRAWYERLS-----KFLLKM---QLKEGXFINQAKYIR 276

Query: 364 DLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKAYRGMIGSLLYLTASRPDIMFSDI 423
           DLLKRF     K  +TPMS+S KLDKDEK KS+    YRGMIGSLLYLTASRPDIM+S  
Sbjct: 277 DLLKRFNMEEAKTMKTPMSSSIKLDKDEKSKSIYSTMYRGMIGSLLYLTASRPDIMYSVF 329

[Close]
BLAST of CmoCh20G010220 vs. TrEMBL
Match: A5C8K0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001808 PE=4 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 6.4e-104
Identity = 203/318 (63.84%), Postives = 244/318 (76.73%), Query Frame = 1 

Query: 134  RYALSHPKDLILGDLEQGVKTRSSI-NLFNNLAFVSQIEPKSLKDAENDEFWILAMQEEL 193
            ++ ++HP+D I+G+   GV+TRSS+ N+ NNLAF+SQIEPK++KDA  DE W++AMQ+EL
Sbjct: 924  KFVINHPQDQIIGNPLSGVRTRSSLRNICNNLAFISQIEPKNIKDAIVDENWMIAMQKEL 983

Query: 194  NQFERNKVWELVPRPSNTSIIGTKWVFRNKMDENGNIMRNKARLVAQGYCQEEGIDYEET 253
            NQFER++VWELVPRPSN S+IGTKWVFRNKMDENG I+RNKARLVAQGY QEEGIDYEET
Sbjct: 984  NQFERSEVWELVPRPSNQSVIGTKWVFRNKMDENGIIVRNKARLVAQGYNQEEGIDYEET 1043

Query: 254  FAPVARLEAIRMLLAFASYKNFVLYQMDVKSAFLNGYIMEEVYVEQPPGFENVEFPHHVY 313
            FAPVARLEAIRMLLAFA +K+F+LYQMDVKSAFLNG+I EE+YVEQPPGF++  FP+HV+
Sbjct: 1044 FAPVARLEAIRMLLAFACFKDFILYQMDVKSAFLNGFINEEIYVEQPPGFQSFNFPNHVF 1103

Query: 314  KLKKALYGLKQAPRACEFEMS-MMGELSFFLG-----LQIKQLKNGIFINQ--------- 373
            KLKKALYGLKQAPRA    +S  + + SF +G     L IK  +N + + Q         
Sbjct: 1104 KLKKALYGLKQAPRAWYERLSKFLLKKSFKMGKIDTTLFIKTKENDMLLVQIYVDDITFG 1163

Query: 374  ---------------EKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKAYRG 421
                            KY KDLLKRF     K+ +TPMS+S KLD DEKGKS+D   YRG
Sbjct: 1164 ATNDSLCEDFSKCMHTKYIKDLLKRFNMGEAKVMKTPMSSSIKLDMDEKGKSIDSTMYRG 1223

[Close]
BLAST of CmoCh20G010220 vs. TrEMBL
Match: A5BK23_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044238 PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 8.4e-104
Identity = 197/323 (60.99%), Postives = 239/323 (73.99%), Query Frame = 1 

Query: 124 EGSSSMPKEWRYALSHPKDLILGDLEQGVKTRSSI-NLFNNLAFVSQIEPKSLKDAENDE 183
           E S  +PK+W++ ++HP+D I+G+   GV+TRSS+ N+ NN AF+SQIEPK++ DA  DE
Sbjct: 104 ESSQDLPKDWKFVINHPQDQIIGNSSSGVRTRSSLRNICNNFAFISQIEPKNINDALVDE 163

Query: 184 FWILAMQEELNQFERNKVWELVPRPSNTSIIGTKWVFRNKMDENGNIMRNKARLVAQGYC 243
            W++AMQEELNQFERN+VWELV RPSN S+IGT+WVFRNKMDEN  I+RNK+RLVAQG+ 
Sbjct: 164 NWMIAMQEELNQFERNEVWELVARPSNQSVIGTRWVFRNKMDENXIILRNKSRLVAQGFN 223

Query: 244 QEEGIDYEETFAPVARLEAIRMLLAFASYKNFVLYQMDVKSAFLNGYIMEEVYVEQPPGF 303
           QEEGIDYEETFAPVARLEAIRMLLAFA +K+FVLYQMDVKS FLN +I E VYVE PPGF
Sbjct: 224 QEEGIDYEETFAPVARLEAIRMLLAFACFKDFVLYQMDVKSXFLNDFINEXVYVEXPPGF 283

Query: 304 ENVEFPHHVYKLKKALYGLKQAPRACEFEMS--------MMGELSFFLGLQIKQ------ 363
           ++V FP+HV+KLKK LYGLK+APRA    +S         MG++   L ++ K+      
Sbjct: 284 QSVNFPNHVFKLKKTLYGLKEAPRAXNERLSKFLXKKGFKMGKIDTTLFIKTKENDMLLV 343

Query: 364 -----------LKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDI 421
                         G FINQ KY +DLLKRF     K  + PMS+S KLDKDEK KS+D 
Sbjct: 344 QIYVDDIIFGATNEGTFINQAKYIRDLLKRFNMEEAKTMKNPMSSSIKLDKDEKXKSIDS 403

[Close]
BLAST of CmoCh20G010220 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 144.1 bits (362), Expect = 2.1e-34
Identity = 72/172 (41.86%), Postives = 112/172 (65.12%), Query Frame = 1 

Query: 171 EPKSLKDAENDEFWILAMQEELNQFERNKVWELVPRPSNTSIIGTKWVFRNKMDENGNIM 230
           EP +  +A+    W  AM +E+   E    WE+   P N   IG KWV++ K + +G I 
Sbjct: 85  EPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIE 144

Query: 231 RNKARLVAQGYCQEEGIDYEETFAPVARLEAIRMLLAFASYKNFVLYQMDVKSAFLNGYI 290
           R KARLVA+GY Q+EGID+ ETF+PV +L +++++LA ++  NF L+Q+D+ +AFLNG +
Sbjct: 145 RYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDL 204

Query: 291 MEEVYVEQPPGFENVEF----PHHVYKLKKALYGLKQAPRA--CEFEMSMMG 337
            EE+Y++ PPG+   +     P+ V  LKK++YGLKQA R    +F ++++G
Sbjct: 205 DEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIG 256

[Close]
BLAST of CmoCh20G010220 vs. TAIR10
Match: ATMG00820.1 (ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase))

HSP 1 Score: 103.6 bits (257), Expect = 3.2e-22
Identity = 57/122 (46.72%), Postives = 77/122 (63.11%), Query Frame = 1 

Query: 153 KTRSSINLFN---NLAFVSQI--EPKSLKDAENDEFWILAMQEELNQFERNKVWELVPRP 212
           ++++ IN  N   +L   + I  EPKS+  A  D  W  AMQEEL+   RNK W LVP P
Sbjct: 4   RSKAGINKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPP 63

Query: 213 SNTSIIGTKWVFRNKMDENGNIMRNKARLVAQGYCQEEGIDYEETFAPVARLEAIRMLLA 270
            N +I+G KWVF+ K+  +G + R KARLVA+G+ QEEGI + ET++PV R   IR +L 
Sbjct: 64  VNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILN 123

[Close]
BLAST of CmoCh20G010220 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-09
Identity = 34/94 (36.17%), Postives = 53/94 (56.38%), Query Frame = 1 

Query: 330 FEMSMMGELSFFLGLQIKQLKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKD 389
           F M  +G + +FLG+QIK   +G+F++Q KY + +L     N G +   PMST   L  +
Sbjct: 31  FSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILN----NAGMLDCKPMSTPLPLKLN 90

Query: 390 EK---GKSVDIKAYRGMIGSLLYLTASRPDIMFS 421
                 K  D   +R ++G+L YLT +RPDI ++
Sbjct: 91  SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYA 120

[Close]
BLAST of CmoCh20G010220 vs. NCBI nr
Match: gi|147778546|emb|CAN62895.1| (hypothetical protein VITISV_021518 [Vitis vinifera])

HSP 1 Score: 436.4 bits (1121), Expect = 5.9e-119
Identity = 214/298 (71.81%), Postives = 251/298 (84.23%), Query Frame = 1 

Query: 124 EGSSSMPKEWRYALSHPKDLILGDLEQGVKTRSSI-NLFNNLAFVSQIEPKSLKDAENDE 183
           E S  +PK+W++ ++HP+D I+G+    V+TRSS+ N+ NNLAF+S IEPK++KDA  DE
Sbjct: 21  ESSQDLPKDWKFVINHPQDQIIGNPSSRVRTRSSLRNICNNLAFISHIEPKNIKDALVDE 80

Query: 184 FWILAMQEELNQFERNKVWELVPRPSNTSIIGTKWVFRNKMDENGNIMRNKARLVAQGYC 243
            W+  MQEELNQFER++VWELVPRP N S+IGT+WVFR KMDENG I+RNKARLVAQG+ 
Sbjct: 81  NWMTVMQEELNQFERSEVWELVPRPHNQSVIGTRWVFRIKMDENGIIIRNKARLVAQGFN 140

Query: 244 QEEGIDYEETFAPVARLEAIRMLLAFASYKNFVLYQMDVKSAFLNGYIMEEVYVEQPPGF 303
           QEEGIDYEETFAPVARLEAIRMLLAFA +K+FVLYQMDVKSAFLNG+I EEVYVEQPP F
Sbjct: 141 QEEGIDYEETFAPVARLEAIRMLLAFACFKDFVLYQMDVKSAFLNGFINEEVYVEQPPSF 200

Query: 304 ENVEFPHHVYKLKKALYGLKQAPRACEFEMSMMGELSFFLGLQIKQLKNGIFINQEKYTK 363
           ++  FP+HV++LK ALYGLKQAPRACEFEMSMMGEL+FFLGLQIKQLK G FINQ KY +
Sbjct: 201 QSFNFPNHVFRLKNALYGLKQAPRACEFEMSMMGELNFFLGLQIKQLKEGTFINQAKYIR 260

Query: 364 DLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKAYRGMIGSLLYLTASRPDIMFS 421
           D LKRF     K  +TPMS+S KLD DEKGK ++   YRGMIGSLL LTASRPDIM+S
Sbjct: 261 DPLKRFNMEEAKTMKTPMSSSIKLDMDEKGKPINSTMYRGMIGSLLNLTASRPDIMYS 318

[Close]
BLAST of CmoCh20G010220 vs. NCBI nr
Match: gi|147768968|emb|CAN62460.1| (hypothetical protein VITISV_035911 [Vitis vinifera])

HSP 1 Score: 419.9 bits (1078), Expect = 5.8e-114
Identity = 221/334 (66.17%), Postives = 260/334 (77.84%), Query Frame = 1 

Query: 107 DNGKEIVTSKEEVSLK--EEGSSSMPKEWRYALSHP-----KDLILGDLEQGVKTRSSI- 166
           D G E    K ++  K  +E S   PK+    L+ P     +D I+G+   GV+TRSS+ 
Sbjct: 27  DLGLETFMGKLQIEDKRQQEESGEDPKKEESPLALPPPQQVQDQIIGNPSSGVRTRSSLK 86

Query: 167 NLFNNLAFVSQIEPKSLKDAENDEFWILAMQEELNQFERNKVWELVPRPSNTSIIGTKWV 226
           N+ NNLAF+SQ EPK++KDA  DE W++AMQEELN+FER++VWELVPRPSN S+IGTKWV
Sbjct: 87  NICNNLAFISQTEPKNIKDAIVDENWMIAMQEELNKFERSEVWELVPRPSNQSVIGTKWV 146

Query: 227 FRNKMDENGNIMRNKARLVAQGYCQEEGIDYEETFAPVARLEAIRMLLAFASYKNFVLYQ 286
           FRNKM+EN  I+RNKARLVAQGY QEEGIDYE+TFAPVARLEAIRML AFA +K+F+LYQ
Sbjct: 147 FRNKMNENDIIVRNKARLVAQGYNQEEGIDYEKTFAPVARLEAIRMLRAFACFKDFILYQ 206

Query: 287 MDVKSAFLNGYIMEEVYVEQPPGFENVEFPHHVYKLKKALYGLKQAPRA----------- 346
           MDVKSAFLNG+I EEVYVEQPPGF++  FP+HV+KLKK LYGLKQAP+A           
Sbjct: 207 MDVKSAFLNGFINEEVYVEQPPGFQSFNFPNHVFKLKKTLYGLKQAPKAWYERLNFSKCM 266

Query: 347 -CEFEMSMMGELSFFLGLQIKQLKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKL 406
             EFEMSMMGEL+FFLGLQIKQLK G FINQ KY KDLLKRF     K+ +TPMS+S KL
Sbjct: 267 HSEFEMSMMGELNFFLGLQIKQLKEGTFINQAKYIKDLLKRFNMEEAKVMKTPMSSSIKL 326

Query: 407 DKDEKGKSVDIKAYRGMIGSLLYLTASRPDIMFS 421
           D DE+GKS+D   YRGMIGSLLYLTASRPD M+S
Sbjct: 327 DMDERGKSIDSTMYRGMIGSLLYLTASRPDFMYS 360

[Close]
BLAST of CmoCh20G010220 vs. NCBI nr
Match: gi|147836561|emb|CAN70885.1| (hypothetical protein VITISV_018629 [Vitis vinifera])

HSP 1 Score: 398.7 bits (1023), Expect = 1.4e-107
Identity = 201/301 (66.78%), Postives = 243/301 (80.73%), Query Frame = 1 

Query: 124 EGSSSMPKEWRYALSHPKDLILGDLEQGVKTRSSI-NLFNNLAFVSQIEPKSLKDAENDE 183
           E S  +PKE ++ ++HP+D I+G+   GV+TRSS+ N+FNNLAF+SQIEPK++ +  +DE
Sbjct: 37  ESSQDLPKELKFVINHPQDQIIGNPSSGVRTRSSLRNIFNNLAFISQIEPKNINNVLDDE 96

Query: 184 FWILAMQEELNQFERNKVWELVPRPSNTSIIGTKWVFRNKMDENGNIMRNKARLVAQGYC 243
            W++AMQEELNQFER++VWEL PRPSN S+IGT+WVFRNK+DENG I+RNKARLVAQG+ 
Sbjct: 97  NWMIAMQEELNQFERSEVWELAPRPSNQSVIGTRWVFRNKIDENGIIVRNKARLVAQGFN 156

Query: 244 QEEGIDYEETFAPVARLEAIRMLLAFASYKNFVLYQMDVKSAFLNGYIMEEVYVEQPPGF 303
           QE+GIDYEETFAPV RLEAIRMLLAFA +K+FVLYQM VK+AFLNG+I EEVYVEQPPGF
Sbjct: 157 QEKGIDYEETFAPVVRLEAIRMLLAFACFKDFVLYQMYVKNAFLNGFINEEVYVEQPPGF 216

Query: 304 ENVEFPHHVYKLKKALYGLKQAPRACEFEMSMMGELSFFLGLQIKQLKNGIFINQEKYTK 363
           ++  FP+HV+KLK+ALYGLKQAPRA    +S      F L +   QLK G FINQ KY +
Sbjct: 217 QSFNFPNHVFKLKRALYGLKQAPRAWYERLS-----KFLLKM---QLKEGXFINQAKYIR 276

Query: 364 DLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKAYRGMIGSLLYLTASRPDIMFSDI 423
           DLLKRF     K  +TPMS+S KLDKDEK KS+    YRGMIGSLLYLTASRPDIM+S  
Sbjct: 277 DLLKRFNMEEAKTMKTPMSSSIKLDKDEKSKSIYSTMYRGMIGSLLYLTASRPDIMYSVF 329

[Close]
BLAST of CmoCh20G010220 vs. NCBI nr
Match: gi|778708530|ref|XP_011656225.1| (PREDICTED: LOW QUALITY PROTEIN: retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis sativus])

HSP 1 Score: 395.6 bits (1015), Expect = 1.2e-106
Identity = 204/276 (73.91%), Postives = 233/276 (84.42%), Query Frame = 1 

Query: 84  DNKKGKIIGKGTIERNFGDLLVSDNGKEIVTSKEEVSL---KEEGSSSMPKEWRYALSHP 143
           +N   + I    +E++FGDLLV+D GKEIV S ++V++   KEEGSSS+PK WRYALSH 
Sbjct: 350 NNVSNESICSDDLEKDFGDLLVNDKGKEIVPSMQDVNIIEKKEEGSSSLPKVWRYALSHL 409

Query: 144 KDLILGDLEQGVKTRSSINLFNNLAFVSQIEPKSLKDAENDEFWILAMQEELNQFERNKV 203
           KDLIL + EQGVKTRSS+NLF+NLAFVSQIEP+S KDAE DEFWILAMQEELNQFERNKV
Sbjct: 410 KDLILSNPEQGVKTRSSLNLFSNLAFVSQIEPRSFKDAECDEFWILAMQEELNQFERNKV 469

Query: 204 WELVPRPSNTSIIGTKWVFRNKMDENGNIMRNKARLVAQGYCQEEGIDYEETFAPVARLE 263
           W+LVPRPSN SIIGTKWVFRNKMDENGNI+RNKARLVAQGYCQEEGIDYEETFAPVARLE
Sbjct: 470 WKLVPRPSNASIIGTKWVFRNKMDENGNIIRNKARLVAQGYCQEEGIDYEETFAPVARLE 529

Query: 264 AIRMLLAFASYKNFVLYQMDVKSAFLNGYIMEEVYVEQPPGFENVEFPHHVYKLKKALYG 323
           AIRMLLAFASYKNF+LYQMDVKS FLNGYI+E+ YVEQP  FE+ + P+HVYKLKKALYG
Sbjct: 530 AIRMLLAFASYKNFILYQMDVKSDFLNGYIVEKFYVEQPXAFESFDLPNHVYKLKKALYG 589

Query: 324 LKQAPRACEFEMS-MMGELSFFLGLQIKQLKNGIFI 356
           LKQAPRA    +S  + E  F +G    ++ N +FI
Sbjct: 590 LKQAPRAWYDRLSKFLLENDFKMG----KIDNTLFI 621

[Close]
BLAST of CmoCh20G010220 vs. NCBI nr
Match: gi|147834092|emb|CAN64335.1| (hypothetical protein VITISV_001808 [Vitis vinifera])

HSP 1 Score: 386.0 bits (990), Expect = 9.2e-104
Identity = 203/318 (63.84%), Postives = 244/318 (76.73%), Query Frame = 1 

Query: 134  RYALSHPKDLILGDLEQGVKTRSSI-NLFNNLAFVSQIEPKSLKDAENDEFWILAMQEEL 193
            ++ ++HP+D I+G+   GV+TRSS+ N+ NNLAF+SQIEPK++KDA  DE W++AMQ+EL
Sbjct: 924  KFVINHPQDQIIGNPLSGVRTRSSLRNICNNLAFISQIEPKNIKDAIVDENWMIAMQKEL 983

Query: 194  NQFERNKVWELVPRPSNTSIIGTKWVFRNKMDENGNIMRNKARLVAQGYCQEEGIDYEET 253
            NQFER++VWELVPRPSN S+IGTKWVFRNKMDENG I+RNKARLVAQGY QEEGIDYEET
Sbjct: 984  NQFERSEVWELVPRPSNQSVIGTKWVFRNKMDENGIIVRNKARLVAQGYNQEEGIDYEET 1043

Query: 254  FAPVARLEAIRMLLAFASYKNFVLYQMDVKSAFLNGYIMEEVYVEQPPGFENVEFPHHVY 313
            FAPVARLEAIRMLLAFA +K+F+LYQMDVKSAFLNG+I EE+YVEQPPGF++  FP+HV+
Sbjct: 1044 FAPVARLEAIRMLLAFACFKDFILYQMDVKSAFLNGFINEEIYVEQPPGFQSFNFPNHVF 1103

Query: 314  KLKKALYGLKQAPRACEFEMS-MMGELSFFLG-----LQIKQLKNGIFINQ--------- 373
            KLKKALYGLKQAPRA    +S  + + SF +G     L IK  +N + + Q         
Sbjct: 1104 KLKKALYGLKQAPRAWYERLSKFLLKKSFKMGKIDTTLFIKTKENDMLLVQIYVDDITFG 1163

Query: 374  ---------------EKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDEKGKSVDIKAYRG 421
                            KY KDLLKRF     K+ +TPMS+S KLD DEKGKS+D   YRG
Sbjct: 1164 ATNDSLCEDFSKCMHTKYIKDLLKRFNMGEAKVMKTPMSSSIKLDMDEKGKSIDSTMYRG 1223

The following BLAST results are available for this feature:
BLAST of CmoCh20G010220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
COPIA_DROME6.1e-3148.32Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3[more]
POLX_TOBAC1.4e-3036.29Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
M820_ARATH5.7e-2146.72Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg0... [more]
YE12B_YEAST5.0e-0930.06Transposon Ty1-ER2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ... [more]
YM14B_YEAST5.0e-0930.06Transposon Ty1-MR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ... [more]
BLAST of CmoCh20G010220 vs. TrEMBL
Match NameE-valueIdentityDescription
A5AVS9_VITVI4.1e-11971.81Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021518 PE=4 SV=1[more]
A5AH07_VITVI4.0e-11466.17Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035911 PE=4 SV=1[more]
A5C4X7_VITVI9.6e-10866.78Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018629 PE=4 SV=1[more]
A5C8K0_VITVI6.4e-10463.84Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001808 PE=4 SV=1[more]
A5BK23_VITVI8.4e-10460.99Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044238 PE=4 SV=1[more]
BLAST of CmoCh20G010220 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G23160.12.1e-3441.86 cysteine-rich RLK (RECEPTOR-like protein kinase) 8[more]
ATMG00820.13.2e-2246.72ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)[more]
ATMG00810.11.8e-0936.17ATMG00810.1 DNA/RNA polymerases superfamily protein[more]
BLAST of CmoCh20G010220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147778546|emb|CAN62895.1|5.9e-11971.81hypothetical protein VITISV_021518 [Vitis vinifera][more]
gi|147768968|emb|CAN62460.1|5.8e-11466.17hypothetical protein VITISV_035911 [Vitis vinifera][more]
gi|147836561|emb|CAN70885.1|1.4e-10766.78hypothetical protein VITISV_018629 [Vitis vinifera][more]
gi|778708530|ref|XP_011656225.1|1.2e-10673.91PREDICTED: LOW QUALITY PROTEIN: retrovirus-related Pol polyprotein from transpos... [more]
gi|147834092|emb|CAN64335.1|9.2e-10463.84hypothetical protein VITISV_001808 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006310 DNA recombination
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G010220.1CmoCh20G010220.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 329..381
score: 4.4E-12coord: 198..327
score: 3.2
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 28..420
score: 4.7E
NoneNo IPR availablePANTHERPTHR11439:SF192SUBFAMILY NOT NAMEDcoord: 28..420
score: 4.7E
NoneNo IPR availableunknownSSF56672DNA/RNA polymerasescoord: 197..419
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh20G010220Cucumber (Gy14) v2cgybcmoB208
CmoCh20G010220Cucumber (Chinese Long) v3cmocucB0636
CmoCh20G010220Watermelon (97103) v2cmowmbB556
CmoCh20G010220Wax gourdcmowgoB0692
CmoCh20G010220Cucurbita maxima (Rimu)cmacmoB551
CmoCh20G010220Wild cucumber (PI 183967)cmocpiB535
CmoCh20G010220Cucumber (Chinese Long) v2cmocuB529
CmoCh20G010220Watermelon (Charleston Gray)cmowcgB489
CmoCh20G010220Watermelon (97103) v1cmowmB519
CmoCh20G010220Cucurbita pepo (Zucchini)cmocpeB517
CmoCh20G010220Bottle gourd (USVL1VR-Ls)cmolsiB488
CmoCh20G010220Bottle gourd (USVL1VR-Ls)cmolsiB496