CmoCh20G009680 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh20G009680
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRetrotransposon protein, putative, Ty1-copia subclass
LocationCmo_Chr20 : 5352989 .. 5354031 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAACTCAATAGTACAATTACTCGCTTCTGAGAAATTAAACGGTGACAACTACACAACTTGGAAATCAAACCTAAACACAATACTGGTCATTGATGATTTAAAGTTTGTTTTAACTGAGGAGTGTCCTCCAAACCCAAACTCAAATGCAAACCGAACAGCTCGGGATGCATATGACAGATGGATAAAGGCAAATGACAAAGCCCGAGTGTACATTCTAGCCAGCATATCTGATGTTTTCGCTAAGAAACACGATGTTATGGGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCGTCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAACTGCCGTATGAAAGAAGGGACCTCAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCGAAGAGCTTCTTCCAGTTCCGCACCAATGTGGTTATGAACAAAATAGAATATAACTTGACTGCTCTTCTCAATGAGCTACAGACTTATCAGTCCCTCTTAACAAACAAGGGACAAACAGGAGAAGCAAATGTTGCCATCTCCAAGAAATTACTACGAGGATCGTCCTCCCAAAATAAGTCTGGACCTTCAACTTCTAAAAGTGTTTTGATGAAGAAGAAGGGAAAAGGGAAAAATAAGATTCCTACTAACCGCAAGAACAAGGTTCAAAAAGCAGATAAAGGAAAATGTTTCCATTGCAACGAAAACGGGCACTGGAAGAGAAATTGCCCAAAATACCTTGCAGAGAAGAAAGCCGAAAAGACACAACAAGGTAAATATGATTTACTCGTTGTAGAAATGTGTTTAGTAGAGTATGACAACTCAACTTGGATACTAGATTCAGGGGCGACTAATCATATTTGTTCTTTTTACCAGGAAACTAGCTCCTGGAGAATGCTTGCGGACGGCGAGATAACACTCAGGGTTGGAACAGGAGAGGTTGTCTCAGCAAGATC

mRNA sequence

ATGACAAACTCAATAGTACAATTACTCGCTTCTGAGAAATTAAACGGTGACAACTACACAACTTGGAAATCAAACCTAAACACAATACTGGTCATTGATGATTTAAAGTTTGTTTTAACTGAGGAGTGTCCTCCAAACCCAAACTCAAATGCAAACCGAACAGCTCGGGATGCATATGACAGATGGATAAAGGCAAATGACAAAGCCCGAGTGTACATTCTAGCCAGCATATCTGATGTTTTCGCTAAGAAACACGATGTTATGGGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCGTCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAACTGCCGTATGAAAGAAGGGACCTCAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCGAAGAGCTTCTTCCAGTTCCGCACCAATGTGGTTATGAACAAAATAGAATATAACTTGACTGCTCTTCTCAATGAGCTACAGACTTATCAGTCCCTCTTAACAAACAAGGGACAAACAGGAGAAGCAAATGTTGCCATCTCCAAGAAATTACTACGAGGATCGTCCTCCCAAAATAAGTCTGGACCTTCAACTTCTAAAAGTGTTTTGATGAAGAAGAAGGGAAAAGGGAAAAATAAGATTCCTACTAACCGCAAGAACAAGGTTCAAAAAGCAGATAAAGGAAAATGTTTCCATTGCAACGAAAACGGGCACTGGAAGAGAAATTGCCCAAAATACCTTGCAGAGAAGAAAGCCGAAAAGACACAACAAGGAAACTAGCTCCTGGAGAATGCTTGCGGACGGCGAGATAACACTCAGGGTTGGAACAGGAGAGGTTGTCTCAGCAAGATC

Coding sequence (CDS)

ATGACAAACTCAATAGTACAATTACTCGCTTCTGAGAAATTAAACGGTGACAACTACACAACTTGGAAATCAAACCTAAACACAATACTGGTCATTGATGATTTAAAGTTTGTTTTAACTGAGGAGTGTCCTCCAAACCCAAACTCAAATGCAAACCGAACAGCTCGGGATGCATATGACAGATGGATAAAGGCAAATGACAAAGCCCGAGTGTACATTCTAGCCAGCATATCTGATGTTTTCGCTAAGAAACACGATGTTATGGGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCGTCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAACTGCCGTATGAAAGAAGGGACCTCAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCGAAGAGCTTCTTCCAGTTCCGCACCAATGTGGTTATGAACAAAATAGAATATAACTTGACTGCTCTTCTCAATGAGCTACAGACTTATCAGTCCCTCTTAACAAACAAGGGACAAACAGGAGAAGCAAATGTTGCCATCTCCAAGAAATTACTACGAGGATCGTCCTCCCAAAATAAGTCTGGACCTTCAACTTCTAAAAGTGTTTTGATGAAGAAGAAGGGAAAAGGGAAAAATAAGATTCCTACTAACCGCAAGAACAAGGTTCAAAAAGCAGATAAAGGAAAATGTTTCCATTGCAACGAAAACGGGCACTGGAAGAGAAATTGCCCAAAATACCTTGCAGAGAAGAAAGCCGAAAAGACACAACAAGGAAACTAG
Homology
[Close]
BLAST of CmoCh20G009680 vs. TrEMBL
Match: E2GK51_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 1.2e-106
Identity = 207/288 (71.88%), Postives = 239/288 (82.99%), Query Frame = 1 

Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYD 60
           M  SIVQLLASEKLNGDNY+ WKSNLNTILV+DDL+FVLTEECP  P  NANRT R+AYD
Sbjct: 1   MNTSIVQLLASEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPALNANRTVREAYD 60

Query: 61  RWIKANDKARVYILASISDVFAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RW+KANDKARVYILAS++DV AKKHD + TAK IM+SL+ MFGQPS+SLRHEAIK+IY  
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHDSIATAKGIMDSLREMFGQPSWSLRHEAIKHIYTK 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
           RMKEGTSVREHVLDMM+HFN+AE N   IDE +QVSFI+ SLPKSF  F+TN  +NKIE+
Sbjct: 121 RMKEGTSVREHVLDMMMHFNIAEVNGGPIDEANQVSFILQSLPKSFVPFQTNASLNKIEF 180

Query: 181 NLTALLNELQTYQSLLTNKGQTGEANVAISK-KLLRGSSSQNKSGPSTSKSVLMKKKGKG 240
           NLT LLNELQ +Q+L  +KG+  EANVA++K K +RGSSS+NK GPS ++   MKKKGKG
Sbjct: 181 NLTTLLNELQRFQNLTLSKGKEVEANVAVTKRKFIRGSSSKNKVGPSKAQ---MKKKGKG 240

Query: 241 KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEKTQQG 288
             K P   K K + ADKGKCFHCN++GHWKRNCPKYLAEKKAEK  QG
Sbjct: 241 --KAPNTSKVK-KNADKGKCFHCNQDGHWKRNCPKYLAEKKAEKATQG 282

[Close]
BLAST of CmoCh20G009680 vs. TrEMBL
Match: A0A165U314_9ROSI (Gag/pol protein OS=Momordica dioica PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 9.3e-64
Identity = 149/294 (50.68%), Postives = 190/294 (64.63%), Query Frame = 1 

Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILV-IDDLKFVLTEECPPNPNSNANRTARDAY 60
           M  SIVQLLASEK +G N++ WKSNL  +L+ +DDL+FVLT      P  NANR  ++AY
Sbjct: 1   MNTSIVQLLASEKDDGSNFSAWKSNLIKLLLKVDDLRFVLTRALGDAPALNANRDVKNAY 60

Query: 61  DRWIKANDKARVYILASISDVFAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYN 120
           DRW+KAND  R  +LA++S    ++++ + TAK IM+ LK +F + ++SLRHEA    Y 
Sbjct: 61  DRWVKANDVQRAVMLATMSPELQRRYERIATAKGIMDELKFIFQKNTWSLRHEAFTKFYT 120

Query: 121 CRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIE 180
            RMKEGTSV EHVLDM ++ + AE N   IDE + VSFI+ SLPKS+  F  N  MNK+ 
Sbjct: 121 KRMKEGTSVSEHVLDMAMYSSRAEVNGGPIDEANAVSFILQSLPKSYKGFLLNASMNKMN 180

Query: 181 YNLTALLNELQTYQSL-LTNKGQTGEANVAISKKLLRG-----SSSQNKSGPSTSKSVLM 240
            +   L NELQ +Q+L L+ + +    N   +K+  R       SS+NK GP   K   M
Sbjct: 181 KSPGELFNELQRFQNLTLSKEVEANMVNKVTAKRFKRNDKGKKGSSKNKVGPDEIK---M 240

Query: 241 KKKGKGKNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEKTQQG 288
           KKKGKGK      +  K   ADKGKCFHCNE GHWKRNCPKYLA+KKAEK   G
Sbjct: 241 KKKGKGK---AAKKGKKGSAADKGKCFHCNEMGHWKRNCPKYLADKKAEKATSG 288

[Close]
BLAST of CmoCh20G009680 vs. TrEMBL
Match: E2GK52_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.9e-57
Identity = 115/162 (70.99%), Postives = 134/162 (82.72%), Query Frame = 1 

Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYD 60
           M  SIVQLLASEKLN DNY+ WKSNLNTILV++DL+F+LTEEC   P  NANRT R+AYD
Sbjct: 1   MNTSIVQLLASEKLNSDNYSAWKSNLNTILVVEDLRFILTEECHQAPALNANRTVREAYD 60

Query: 61  RWIKANDKARVYILASISDVFAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RW KANDKA VYILAS++DV AKK+D + T K IM+S + MFGQPS+SLRHEAIK IY  
Sbjct: 61  RWGKANDKACVYILASMTDVLAKKYDSIATTKGIMDSFREMFGQPSWSLRHEAIKRIYTK 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSL 163
           RMKEGTSVREHVLDMM+HFN+A+ +   IDE +QVSFI+ SL
Sbjct: 121 RMKEGTSVREHVLDMMMHFNIAKVHGGPIDEANQVSFILQSL 162

[Close]
BLAST of CmoCh20G009680 vs. TrEMBL
Match: W9SH28_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004989 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 9.7e-53
Identity = 107/201 (53.23%), Postives = 146/201 (72.64%), Query Frame = 1 

Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYD 60
           M+N I+ LL +EKL+GDNY  WKSN+N +L+ +D KFVL +ECPP P +NA +TAR+ YD
Sbjct: 1   MSNLIIILLVTEKLDGDNYAKWKSNMNILLICEDYKFVLVDECPPEPAANATKTAREPYD 60

Query: 61  RWIKANDKARVYILASISDVFAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RWIKAN+KA+ ++LAS+SDV  KKH+ M TA EIMESL+ MFG PS   R +A++   N 
Sbjct: 61  RWIKANNKAKCFMLASMSDVLCKKHEEMETAYEIMESLEAMFGAPSEKARLDAVRAFMND 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
           +MK+G+SV+ HVL+M+ H + AE N A IDE +Q+  I+ SL   F +F  N VMNK + 
Sbjct: 121 KMKKGSSVKAHVLNMIDHLHDAELNGARIDEATQLGIILESLSPDFHEFVNNFVMNKKKS 180

Query: 181 NLTALLNELQTYQSLLTNKGQ 202
           NLT L+N+LQ ++S    KG+
Sbjct: 181 NLTELMNDLQNFESTNQAKGR 201

[Close]
BLAST of CmoCh20G009680 vs. TrEMBL
Match: W9RXH5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001554 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 6.9e-51
Identity = 108/199 (54.27%), Postives = 143/199 (71.86%), Query Frame = 1 

Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYD 60
           M N I+ LLA+EKL+GDNY  WKSN+N +LV +D KF+L EECP  P  NA++TAR+ YD
Sbjct: 1   MPNPIITLLATEKLDGDNYAKWKSNMNILLVCEDYKFLLAEECPLEPADNASKTAREPYD 60

Query: 61  RWIKANDKARVYILASISDVFAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RWIKAN+KA+ ++LAS+SDV  KKH  M TA EIMESL+ MFG PS     +A++   N 
Sbjct: 61  RWIKANNKAKCFMLASMSDVLRKKHGEMETAYEIMESLEAMFGAPSEKACLDAVRAFMND 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
           +MK+G+SV+ HVL+M+ H +  E N A IDE +QV  I+ SL   F +F  N+VMNK + 
Sbjct: 121 KMKKGSSVKAHVLNMIDHLHDTELNGARIDEATQVGIILESLSPDFHEFVNNLVMNKKKS 180

Query: 181 NLTALLNELQTYQSLLTNK 200
           NLT L+N+LQ ++S  TNK
Sbjct: 181 NLTELMNDLQNFES--TNK 197

[Close]
BLAST of CmoCh20G009680 vs. NCBI nr
Match: gi|299474487|gb|ADJ18449.1| (gag/pol protein [Bryonia dioica])

HSP 1 Score: 394.4 bits (1012), Expect = 1.7e-106
Identity = 207/288 (71.88%), Postives = 239/288 (82.99%), Query Frame = 1 

Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYD 60
           M  SIVQLLASEKLNGDNY+ WKSNLNTILV+DDL+FVLTEECP  P  NANRT R+AYD
Sbjct: 1   MNTSIVQLLASEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPALNANRTVREAYD 60

Query: 61  RWIKANDKARVYILASISDVFAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RW+KANDKARVYILAS++DV AKKHD + TAK IM+SL+ MFGQPS+SLRHEAIK+IY  
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHDSIATAKGIMDSLREMFGQPSWSLRHEAIKHIYTK 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
           RMKEGTSVREHVLDMM+HFN+AE N   IDE +QVSFI+ SLPKSF  F+TN  +NKIE+
Sbjct: 121 RMKEGTSVREHVLDMMMHFNIAEVNGGPIDEANQVSFILQSLPKSFVPFQTNASLNKIEF 180

Query: 181 NLTALLNELQTYQSLLTNKGQTGEANVAISK-KLLRGSSSQNKSGPSTSKSVLMKKKGKG 240
           NLT LLNELQ +Q+L  +KG+  EANVA++K K +RGSSS+NK GPS ++   MKKKGKG
Sbjct: 181 NLTTLLNELQRFQNLTLSKGKEVEANVAVTKRKFIRGSSSKNKVGPSKAQ---MKKKGKG 240

Query: 241 KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEKTQQG 288
             K P   K K + ADKGKCFHCN++GHWKRNCPKYLAEKKAEK  QG
Sbjct: 241 --KAPNTSKVK-KNADKGKCFHCNQDGHWKRNCPKYLAEKKAEKATQG 282

[Close]
BLAST of CmoCh20G009680 vs. NCBI nr
Match: gi|659113933|ref|XP_008456826.1| (PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo])

HSP 1 Score: 328.2 bits (840), Expect = 1.5e-86
Identity = 173/291 (59.45%), Postives = 224/291 (76.98%), Query Frame = 1 

Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYD 60
           MT++ + +L ++K NG+NY +WK+ +NT+L+IDDL+FVL E+CP    +NA RT R+AY+
Sbjct: 1   MTSATLNMLVADKFNGNNYASWKNTINTVLIIDDLRFVLVEKCPQVSAANATRTVREAYE 60

Query: 61  RWIKANDKARVYILASISDVFAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RW KAN+KAR Y+LAS+S+V AKK++ M TA+EIM+SL+ MFGQ S+ ++H+A+KYIYN 
Sbjct: 61  RWAKANEKARAYLLASLSEVLAKKNESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
           RM +G  VREHVL+MMV+FNVAE N AVIDE +QVSFI+ SL +SF QFR+NVVMNKI Y
Sbjct: 121 RMNDGALVREHVLNMMVYFNVAEMNGAVIDEANQVSFILESLLESFLQFRSNVVMNKIAY 180

Query: 181 NLTALLNELQTYQSLLTNKGQTGEANVAIS-KKLLRGSSSQNKSGPSTSKSVLMKKK--G 240
            LT LLNELQT++SL+  KGQ GEANVA S +K  RGS+S  K  PS+S +   KKK  G
Sbjct: 181 TLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKYMPSSSGNKKWKKKKGG 240

Query: 241 KG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEKTQQG 288
           +G K  +   + +K  K  KG CFHCN+ GHWKRNCPKYLAEKK  K +QG
Sbjct: 241 QGNKANLAATKTSKKAKVAKGICFHCNQEGHWKRNCPKYLAEKK--KAKQG 289

[Close]
BLAST of CmoCh20G009680 vs. NCBI nr
Match: gi|778697615|ref|XP_011654359.1| (PREDICTED: uncharacterized protein LOC105435361 [Cucumis sativus])

HSP 1 Score: 268.1 bits (684), Expect = 1.8e-68
Identity = 129/169 (76.33%), Postives = 149/169 (88.17%), Query Frame = 1 

Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYD 60
           M +SIVQLLASEK+N DNY  WKSNLNTILV+DDL+FVLTEECP NP SNANRT R+AYD
Sbjct: 1   MNSSIVQLLASEKINDDNYAAWKSNLNTILVVDDLRFVLTEECPQNPASNANRTGREAYD 60

Query: 61  RWIKANDKARVYILASISDVFAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RWIKAN+KARVYILAS+SDV AKKH+ + TAKEIM+SL+GMFGQP +SLRHEA+KYIY  
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLRGMFGQPEWSLRHEAVKYIYTK 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQF 170
           RMKEGTSVREHVLDMM+HFN+A+ N  +I+E +QVSFI+ SLPKSF  F
Sbjct: 121 RMKEGTSVREHVLDMMMHFNIAQVNGGLIEEVNQVSFILESLPKSFIPF 169

[Close]
BLAST of CmoCh20G009680 vs. NCBI nr
Match: gi|1019597807|gb|AMY96445.1| (gag/pol protein [Momordica dioica])

HSP 1 Score: 251.9 bits (642), Expect = 1.3e-63
Identity = 149/294 (50.68%), Postives = 190/294 (64.63%), Query Frame = 1 

Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILV-IDDLKFVLTEECPPNPNSNANRTARDAY 60
           M  SIVQLLASEK +G N++ WKSNL  +L+ +DDL+FVLT      P  NANR  ++AY
Sbjct: 1   MNTSIVQLLASEKDDGSNFSAWKSNLIKLLLKVDDLRFVLTRALGDAPALNANRDVKNAY 60

Query: 61  DRWIKANDKARVYILASISDVFAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYN 120
           DRW+KAND  R  +LA++S    ++++ + TAK IM+ LK +F + ++SLRHEA    Y 
Sbjct: 61  DRWVKANDVQRAVMLATMSPELQRRYERIATAKGIMDELKFIFQKNTWSLRHEAFTKFYT 120

Query: 121 CRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIE 180
            RMKEGTSV EHVLDM ++ + AE N   IDE + VSFI+ SLPKS+  F  N  MNK+ 
Sbjct: 121 KRMKEGTSVSEHVLDMAMYSSRAEVNGGPIDEANAVSFILQSLPKSYKGFLLNASMNKMN 180

Query: 181 YNLTALLNELQTYQSL-LTNKGQTGEANVAISKKLLRG-----SSSQNKSGPSTSKSVLM 240
            +   L NELQ +Q+L L+ + +    N   +K+  R       SS+NK GP   K   M
Sbjct: 181 KSPGELFNELQRFQNLTLSKEVEANMVNKVTAKRFKRNDKGKKGSSKNKVGPDEIK---M 240

Query: 241 KKKGKGKNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEKTQQG 288
           KKKGKGK      +  K   ADKGKCFHCNE GHWKRNCPKYLA+KKAEK   G
Sbjct: 241 KKKGKGK---AAKKGKKGSAADKGKCFHCNEMGHWKRNCPKYLADKKAEKATSG 288

[Close]
BLAST of CmoCh20G009680 vs. NCBI nr
Match: gi|659086056|ref|XP_008443743.1| (PREDICTED: uncharacterized protein LOC103487255, partial [Cucumis melo])

HSP 1 Score: 250.0 bits (637), Expect = 5.1e-63
Identity = 120/159 (75.47%), Postives = 138/159 (86.79%), Query Frame = 1 

Query: 1   MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYD 60
           M +SIVQLLA EKLNGDNY  WKSNLNTILV+DDL+FVLTEECP  P+SNA++T+R AYD
Sbjct: 1   MNSSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPQTPSSNASQTSRKAYD 60

Query: 61  RWIKANDKARVYILASISDVFAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
           RWIKAN+KARVYILAS+SDV AKKH+ + TAKEIM SLKGMFGQP +SLRHE IKYIY  
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMNSLKGMFGQPKWSLRHETIKYIYTK 120

Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIM 160
           RMKEGTS++EHVLDMM+HFN+ E N   IDE +QVSFI+
Sbjct: 121 RMKEGTSIKEHVLDMMMHFNIFEVNGGAIDEANQVSFIL 159

The following BLAST results are available for this feature:
BLAST of CmoCh20G009680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh20G009680 vs. TrEMBL
Match NameE-valueIdentityDescription
E2GK51_BRYDI1.2e-10671.88Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1[more]
A0A165U314_9ROSI9.3e-6450.68Gag/pol protein OS=Momordica dioica PE=4 SV=1[more]
E2GK52_BRYDI2.9e-5770.99Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1[more]
W9SH28_9ROSA9.7e-5353.23Uncharacterized protein OS=Morus notabilis GN=L484_004989 PE=4 SV=1[more]
W9RXH5_9ROSA6.9e-5154.27Uncharacterized protein OS=Morus notabilis GN=L484_001554 PE=4 SV=1[more]
BLAST of CmoCh20G009680 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh20G009680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|299474487|gb|ADJ18449.1|1.7e-10671.88gag/pol protein [Bryonia dioica][more]
gi|659113933|ref|XP_008456826.1|1.5e-8659.45PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo][more]
gi|778697615|ref|XP_011654359.1|1.8e-6876.33PREDICTED: uncharacterized protein LOC105435361 [Cucumis sativus][more]
gi|1019597807|gb|AMY96445.1|1.3e-6350.68gag/pol protein [Momordica dioica][more]
gi|659086056|ref|XP_008443743.1|5.1e-6375.47PREDICTED: uncharacterized protein LOC103487255, partial [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G009680.1CmoCh20G009680.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeGENE3DG3DSA:4.10.60.10coord: 253..275
score: 1.
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 257..274
score: 1.
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 258..274
score: 0.
IPR001878Zinc finger, CCHC-typePROFILEPS50158ZF_CCHCcoord: 258..274
score: 9
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 247..277
score: 4.7
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 12..288
score: 3.1
NoneNo IPR availablePANTHERPTHR11439:SF192SUBFAMILY NOT NAMEDcoord: 12..288
score: 3.1
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 62..193
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh20G009680Cucurbita maxima (Rimu)cmacmoB551
CmoCh20G009680Cucurbita maxima (Rimu)cmacmoB606
CmoCh20G009680Wild cucumber (PI 183967)cmocpiB538
CmoCh20G009680Cucumber (Chinese Long) v2cmocuB533
CmoCh20G009680Melon (DHL92) v3.5.1cmomeB483
CmoCh20G009680Watermelon (Charleston Gray)cmowcgB481
CmoCh20G009680Watermelon (97103) v1cmowmB524
CmoCh20G009680Cucurbita pepo (Zucchini)cmocpeB517
CmoCh20G009680Cucurbita pepo (Zucchini)cmocpeB534
CmoCh20G009680Bottle gourd (USVL1VR-Ls)cmolsiB491
CmoCh20G009680Cucumber (Gy14) v2cgybcmoB211
CmoCh20G009680Melon (DHL92) v3.6.1cmomedB561
CmoCh20G009680Silver-seed gourdcarcmoB1277
CmoCh20G009680Cucumber (Chinese Long) v3cmocucB0639
CmoCh20G009680Watermelon (97103) v2cmowmbB547
CmoCh20G009680Wax gourdcmowgoB0690
CmoCh20G009680Cucurbita moschata (Rifu)cmocmoB404
CmoCh20G009680Cucumber (Gy14) v1cgycmoB0111