CmoCh20G008970 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh20G008970
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr20 : 4548957 .. 4550271 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCCTTTGATGCAAATCATCAGCCAGCGCCTGCCTCACACTTTCACCATAATAACACAGAGACTTTTCAGTGTCAAGAATGTTGGGTGCAGGGCCAGTCTCATTTGGGTCCTTCAATGGTTCAGGCTCTGGCTCCTTGGCAATTTGACACAAATTATGCAACACACAACAAGCAACAATGGTCTGTGGCGCATGACTTAAACCCACGTTCAAATCCTGAAGAATCTTCCACCTAGCTTTAAGCAACCCAATAGCATCAACCACCACAGACCTACCCTTCATCAGCATTCCATCAAACAGGTTCTGTGCAGGCGTGCCGATGCCATTCGGCGAAAATGGTGTCAACAGGAAAGACAACAGAGGATATCCCCAATCACCCACAATGTAAGGTCGAACATGGTGACCCCTAACGTTAATTACGTTATCCCAAACAACATCACCAGAAGTAAGCCTATGGTACATAAGACTATCCCTAAAATGGCTGGCATCGTCACTACCACCAGGAGCTTTAACACACACATCCCAGAAAATTTTCTTGTTGTCCGCAACAACTTGAAGCAGAACCGAGGGATACCCAAATCGACAATTGTAATTAGTGGAAAAATTCTGGTCAGGGGGTAATCGACGAAGCTTGATCGGACTCCCATCAATGGCGCCACACATATTGGGGAGAGAAGTCAACTCCTCGAAAGCCTGAGTGGTCTCAATCAAACGCCGGCGACTTACCGGAATCTTAATAAACTCAGCATAAAGCTTGGTGGCCAAAAGACGGGTGACCATATTGGTGATTTTGGAAACAAGATAGGGTTCGAGAGAGAAACGAGCAGCGACGGTTTTAGCGGAGAGGCCGTGGCAGAGGCGAGAGAGGACCATAGCGACGGCGTAATCGGATGGGAGAGAGAGATTGGAGAGAGCAATATGGGGCTTGAGCTTGTCGACGATGGTGGTGAAGACAGGGTGAGAGAGGCCGTAGAGGGAGCGCCATTGGGCATCGCGAAAAGGGGCTTCGAGGGACCAAATGTGGTCGGTGGAGAAGGCGCGGAAGGCGGAGACGGAGTAATCGGAGGAAGAGGGAGGAAGGGTAGTGGAGGAGGTTCGGGAAGGGGAGGAGGAGGCGTTGGAGCGAGAGGAGGCGATGAAGGAGAGGACGGAGGCGATTGTGAAGAAGAGGAGAGGGGCGGCGGAGGAGGAGGAAAGAAGGGAGGTGGGAGAGTTGAAGGAGGCGGAGGAAGGAGAGGAGGCGGAGGAGGGAGTGGAAGGGAGAAGGGTAATGGTGGGATCGAGGTAGTTGTGGAGGTGGAGGAGAGTTGA

mRNA sequence

ATGGAAGCCTTTGATGCAAATCATCAGCCAGCGCCTGCCTCACACTTTCACCATAATAACACAGAGACTTTTCAGTGTCAAGAATGTTGGGTGCAGGGCCAGTCTCATTTGGGTCCTTCAATGGTTCAGGCTCTGGCTCCTTGGCAATTTGACACAAATTATGCAACACACAACAAGCAACAATGGCGTGCCGATGCCATTCGGCGAAAATGGTGTCAACAGGAAAGACAACAGAGGATATCCCCAATCACCCACAATGTAAGGTCGAACATGGTGACCCCTAACGTTAATTACGTTATCCCAAACAACATCACCAGAAGTAAGCCTATGGTACATAAGACTATCCCTAAAATGGCTGGCATCGTCACTACCACCAGGAGCTTTAACACACACATCCCAGAAAATTTTCTTGTTGTCCGCAACAACTTGAAGCAGAACCGAGGGATACCCAAATCGACAATTCTTGATCGGACTCCCATCAATGGCGCCACACATATTGGGGAGAGAAGTCAACTCCTCGAAAGCCTGAGTGGTCTCAATCAAACGCCGGCGACTTACCGGAATCTTAATAAACTCAGCATAAAGCTTGGTGGCCAAAAGACGGGTGACCATATTGGTGATTTTGGAAACAAGATAGGGTTCGAGAGAGAAACGAGCAGCGACGGTTTTAGCGGAGAGGCCGTGGCAGAGGCGAGAGAGGACCATAGCGACGGCGTAATCGGATGGGAGAGAGAGATTGGAGAGAGCAATATGGGGCTTGAGCTTGTCGACGATGGTGGTGAAGACAGGGTGAGAGAGGCCGTAGAGGGAGCGCCATTGGGCATCGCGAAAAGGGGCTTCGAGGGACCAAATGTGGTCGGTGGAGAAGGCGCGGAAGGCGGAGACGGAGTAATCGGAGGAAGAGGGAGGAAGGGTAGTGGAGGAGGTTCGGGAAGGGGAGGAGGAGGCGTTGGAGCGAGAGGAGGCGATGAAGGAGAGGACGGAGGCGATTGTGAAGAAGAGGAGAGGGGCGGCGGAGGAGGAGGAAAGAAGGGAGGTGGGAGAGTTGAAGGAGGCGGAGGAAGGAGAGGAGGCGGAGGAGGGAGTGGAAGGGAGAAGGGTAATGGTGGGATCGAGGTAGTTGTGGAGGTGGAGGAGAGTTGA

Coding sequence (CDS)

ATGGAAGCCTTTGATGCAAATCATCAGCCAGCGCCTGCCTCACACTTTCACCATAATAACACAGAGACTTTTCAGTGTCAAGAATGTTGGGTGCAGGGCCAGTCTCATTTGGGTCCTTCAATGGTTCAGGCTCTGGCTCCTTGGCAATTTGACACAAATTATGCAACACACAACAAGCAACAATGGCGTGCCGATGCCATTCGGCGAAAATGGTGTCAACAGGAAAGACAACAGAGGATATCCCCAATCACCCACAATGTAAGGTCGAACATGGTGACCCCTAACGTTAATTACGTTATCCCAAACAACATCACCAGAAGTAAGCCTATGGTACATAAGACTATCCCTAAAATGGCTGGCATCGTCACTACCACCAGGAGCTTTAACACACACATCCCAGAAAATTTTCTTGTTGTCCGCAACAACTTGAAGCAGAACCGAGGGATACCCAAATCGACAATTCTTGATCGGACTCCCATCAATGGCGCCACACATATTGGGGAGAGAAGTCAACTCCTCGAAAGCCTGAGTGGTCTCAATCAAACGCCGGCGACTTACCGGAATCTTAATAAACTCAGCATAAAGCTTGGTGGCCAAAAGACGGGTGACCATATTGGTGATTTTGGAAACAAGATAGGGTTCGAGAGAGAAACGAGCAGCGACGGTTTTAGCGGAGAGGCCGTGGCAGAGGCGAGAGAGGACCATAGCGACGGCGTAATCGGATGGGAGAGAGAGATTGGAGAGAGCAATATGGGGCTTGAGCTTGTCGACGATGGTGGTGAAGACAGGGTGAGAGAGGCCGTAGAGGGAGCGCCATTGGGCATCGCGAAAAGGGGCTTCGAGGGACCAAATGTGGTCGGTGGAGAAGGCGCGGAAGGCGGAGACGGAGTAATCGGAGGAAGAGGGAGGAAGGGTAGTGGAGGAGGTTCGGGAAGGGGAGGAGGAGGCGTTGGAGCGAGAGGAGGCGATGAAGGAGAGGACGGAGGCGATTGTGAAGAAGAGGAGAGGGGCGGCGGAGGAGGAGGAAAGAAGGGAGGTGGGAGAGTTGAAGGAGGCGGAGGAAGGAGAGGAGGCGGAGGAGGGAGTGGAAGGGAGAAGGGTAATGGTGGGATCGAGGTAGTTGTGGAGGTGGAGGAGAGTTGA
Homology
[Close]
BLAST of CmoCh20G008970 vs. NCBI nr
Match: gi|297741319|emb|CBI32450.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 158.7 bits (400), Expect = 2.0e-35
Identity = 83/158 (52.53%), Postives = 112/158 (70.89%), Query Frame = 1 

Query: 156 DRTPINGATHIGERSQLLESLSGLNQTPATYRNLNKLSIKLGGQKTGDHIGDFGNKIGFE 215
           D T ++GA H+GE  +L + L G  +T AT  N ++  +K GG++  DH+GD G+++GFE
Sbjct: 575 DGTAVDGAAHVGEGGELFKGLGGFVETAATDGNFDEFGVKFGGEEASDHVGDLGDEVGFE 634

Query: 216 RETSSDGFSGEAVAEAREDHSDGVIGWEREIGESNMGLELVDDGGEDRVREAVEGAPLGI 275
           R    +GF GEAV EAREDH DGV+  ERE+GE ++G ELVDDGGE+ + EAVE +PLG+
Sbjct: 635 RVAGGEGFGGEAVGEAREDHGDGVVRGEREVGEGDVGFELVDDGGENGIGEAVERSPLGV 694

Query: 276 AKRGFEGPNVVGGEGAEGGDGVIGGRGRKGSGGGSGRG 314
           ++RGF GP+V+GGE  EGGDGV+G R     GG  G G
Sbjct: 695 SERGFHGPDVLGGECPEGGDGVVGKRWWWDQGGCGGGG 732

The following BLAST results are available for this feature:
BLAST of CmoCh20G008970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh20G008970 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmoCh20G008970 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh20G008970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|297741319|emb|CBI32450.3|2.0e-3552.53unnamed protein product [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G008970.1CmoCh20G008970.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh20G008970Lsi10G003070Bottle gourd (USVL1VR-Ls)cmolsiB491
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh20G008970Cucurbita pepo (Zucchini)cmocpeB514
CmoCh20G008970Cucurbita pepo (Zucchini)cmocpeB517
CmoCh20G008970Cucurbita pepo (Zucchini)cmocpeB534
CmoCh20G008970Cucumber (Gy14) v2cgybcmoB209
CmoCh20G008970Melon (DHL92) v3.6.1cmomedB563
CmoCh20G008970Silver-seed gourdcarcmoB1073
CmoCh20G008970Silver-seed gourdcarcmoB1414
CmoCh20G008970Cucumber (Chinese Long) v3cmocucB0637
CmoCh20G008970Watermelon (97103) v2cmowmbB574
CmoCh20G008970Wax gourdcmowgoB0679
CmoCh20G008970Wax gourdcmowgoB0693
CmoCh20G008970Cucurbita moschata (Rifu)cmocmoB382
CmoCh20G008970Cucurbita moschata (Rifu)cmocmoB404
CmoCh20G008970Cucumber (Gy14) v1cgycmoB0155
CmoCh20G008970Cucurbita maxima (Rimu)cmacmoB518
CmoCh20G008970Cucurbita maxima (Rimu)cmacmoB551
CmoCh20G008970Cucurbita maxima (Rimu)cmacmoB606
CmoCh20G008970Wild cucumber (PI 183967)cmocpiB536
CmoCh20G008970Cucumber (Chinese Long) v2cmocuB531
CmoCh20G008970Melon (DHL92) v3.5.1cmomeB483
CmoCh20G008970Watermelon (Charleston Gray)cmowcgB472
CmoCh20G008970Watermelon (Charleston Gray)cmowcgB485
CmoCh20G008970Watermelon (97103) v1cmowmB502