CmoCh20G008090 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh20G008090
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr20 : 3999264 .. 4000898 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGAGATGTTTAGTGGTTTGCTCTTTTTGCTTGACTGTAGTAAGCCTCCTGACTTTCAATCATGCCCAGAAATCAGTTTTCTCGCTCTCCATTGCTTGTCGTCGTCGTCGATGTGAAATGCAACATAGAGATTTTTTCGTAAAAGAGTGAACAATACAATATACCTTTTTATTGTTGTGAAATTTTGAGTACTATGAAGGTCCAACCTTACTTTTGCCATTTAACTCTTCACCTTCTCTGGATTGTCTTAAGTAATAAGGGTCTTAGCTATGCTCACTTTCGTGTCTCTAACCATAAAACTTTAGTGAAAATTTTTTGTTATCTTCGAAGCTCACCGTGGGGTGGGCAAAGTAGCTGAAGATTAGTGAATTTGTGTGTAACAGCCCTAGCCCACTGCTAACAGATATAGTCCGCTTTGGCCCATTACGTATCATTGTCAGCCTCACAGTTTTAAAGCGCATCTGCTAGGGAGATGTTTCCATACCCTTATAAGGAATGCTTCGTTCCCCTCTCCAAATGACGTGAGATCTCACAATTCACCCCCCTTGGGGGCCCAACGTCCTCGTTGGCACACTGCTCAGTGTTTGGTTCTGATATCATTTGTAATAGCCAAAGCCCACCGCTAACATATATTGTCCGCTTTGGCCCATTATGTATCGTCATCAGCCTCACAGTTTTAAAACGTGTCGGTTAGGGAGAGGTTTTCACACTCTTATCAAGAATAGTTTGTTCCCCTCTCTAACTGATGTGGGATCTCACGCATGACCCAATGAGGGGAGGCCTCCCGATTATGAAGAGTACCAATGGGGGAATAGATTTGACTGTTAAATGTACAGCACAAAGACTTCTTTTTAAAACTCATCTAGTCACTTCCTTTAGCAATTATCTAAATTTGATGATTCTTTCCTGTACTATTATGGATTCAAACTTTCCCAGGTAATTTCTATATTGGATCGGATCGGCAGAAGGACAAAAAGAAGGATACTAACGATGAAGACTTCGAGCAATCGGAACTGTCCGATGCTCCTGAAGATGACAGGGACTGCAAAGCTGATGATGCTGATGAAGACATTACATATACTCATCTGTGCTGAGGCATCGGTTCACTTTCGCAAGGTTCGTCATCGTAACAAGTTCAAGCAACAAATTTACTACCTCTGTCCTTGTCCTTAGCTTAGCCTTGATTTTGGATGATATCATTTTGAAGCCTAAATTGTTATTTTCAGAGCAAGAAGGCACCAAAATATCAGAATGATGCTGCTCAAAACATTCTCCACTATACCATCCAGAATCTATGATCATCATCAAAGGTAATATACAGAAATTGCCTATTCTACCCGAAATTAAAATATCGATATCAACAAAAATGTCCCGACAGATACTCGTGTTAGTATTTGTCATGATTTAGATGTCTTATCTCCTCGATCTCGGTATTGAATTGCGTTCGATTCACAAAAGGGTGTTTGTTGAGATGAAATATTGTTCACATCATTGCAACTTGTTTTTTCTTTTTCTTTTTCTTTTTTTTTTTTTGGTGGAAAAGAGAAGATCCTTTTAAATTATTCCATATAGTTTTCTTCCATTGATTAAATGTCGAATTAAAAATAAATAATCTGTCCAATAAATATCAA

mRNA sequence

ATGACTGAGATGTTTAGTGGTTTGCTCTTTTTGCTTGACTGTAGTAATTTCTATATTGGATCGGATCGGCAGAAGGACAAAAAGAAGGATACTAACGATGAAGACTTCGAGCAATCGGAACTGTCCGATGCTCCTGAAGATGACAGGGACTGCAAAGCTGATGATGCTGATGAAGACATTACATATACTCATCTGTGCTGAGGCATCGGTTCACTTTCGCAAGAGCAAGAAGGCACCAAAATATCAGAATGATGCTGCTCAAAACATTCTCCACTATACCATCCAGAATCTATGATCATCATCAAAGGTAATATACAGAAATTGCCTATTCTACCCGAAATTAAAATATCGATATCAACAAAAATGTCCCGACAGATACTCGTGTTAGTATTTGTCATGATTTAGATGTCTTATCTCCTCGATCTCGGTATTGAATTGCGTTCGATTCACAAAAGGGTGTTTGTTGAGATGAAATATTGTTCACATCATTGCAACTTGTTTTTTCTTTTTCTTTTTCTTTTTTTTTTTTTGGTGGAAAAGAGAAGATCCTTTTAAATTATTCCATATAGTTTTCTTCCATTGATTAAATGTCGAATTAAAAATAAATAATCTGTCCAATAAATATCAA

Coding sequence (CDS)

ATGACTGAGATGTTTAGTGGTTTGCTCTTTTTGCTTGACTGTAGTAATTTCTATATTGGATCGGATCGGCAGAAGGACAAAAAGAAGGATACTAACGATGAAGACTTCGAGCAATCGGAACTGTCCGATGCTCCTGAAGATGACAGGGACTGCAAAGCTGATGATGCTGATGAAGACATTACATATACTCATCTGTGCTGA
Homology
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BLAST of CmoCh20G008090 vs. TrEMBL
Match: A0A0A0LIX7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G252090 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.7e-06
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 1 

Query: 22  DRQKDKKKDTNDEDFEQSELSDAPEDDRDCKADDADEDITY 63
           DR KDKKKDT DEDF+Q ELSDA +DDRD K DDADEDI Y
Sbjct: 183 DRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIY 223

The following BLAST results are available for this feature:
BLAST of CmoCh20G008090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh20G008090 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIX7_CUCSA7.7e-0678.05Uncharacterized protein OS=Cucumis sativus GN=Csa_2G252090 PE=3 SV=1[more]
BLAST of CmoCh20G008090 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh20G008090 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G008090.1CmoCh20G008090.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh20G008090Melon (DHL92) v3.5.1cmomeB503
CmoCh20G008090Watermelon (Charleston Gray)cmowcgB476
CmoCh20G008090Watermelon (Charleston Gray)cmowcgB485
CmoCh20G008090Watermelon (97103) v1cmowmB516
CmoCh20G008090Watermelon (97103) v1cmowmB534
CmoCh20G008090Cucurbita pepo (Zucchini)cmocpeB517
CmoCh20G008090Cucurbita pepo (Zucchini)cmocpeB521
CmoCh20G008090Cucurbita pepo (Zucchini)cmocpeB534
CmoCh20G008090Bottle gourd (USVL1VR-Ls)cmolsiB491
CmoCh20G008090Bottle gourd (USVL1VR-Ls)cmolsiB500
CmoCh20G008090Cucumber (Gy14) v2cgybcmoB209
CmoCh20G008090Cucumber (Gy14) v2cgybcmoB940
CmoCh20G008090Silver-seed gourdcarcmoB0434
CmoCh20G008090Silver-seed gourdcarcmoB0584
CmoCh20G008090Silver-seed gourdcarcmoB1114
CmoCh20G008090Cucumber (Chinese Long) v3cmocucB0637
CmoCh20G008090Watermelon (97103) v2cmowmbB544
CmoCh20G008090Watermelon (97103) v2cmowmbB550
CmoCh20G008090Wax gourdcmowgoB0673
CmoCh20G008090Wax gourdcmowgoB0679
CmoCh20G008090Cucurbita moschata (Rifu)cmocmoB382
CmoCh20G008090Cucurbita moschata (Rifu)cmocmoB404
CmoCh20G008090Cucurbita maxima (Rimu)cmacmoB519
CmoCh20G008090Cucurbita maxima (Rimu)cmacmoB551
CmoCh20G008090Cucurbita maxima (Rimu)cmacmoB606
CmoCh20G008090Wild cucumber (PI 183967)cmocpiB536
CmoCh20G008090Wild cucumber (PI 183967)cmocpiB567
CmoCh20G008090Cucumber (Chinese Long) v2cmocuB531
CmoCh20G008090Cucumber (Chinese Long) v2cmocuB561