CmoCh20G007950 (gene) Cucurbita moschata (Rifu)

NameCmoCh20G007950
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionSAUR-like auxin-responsive protein family
LocationCmo_Chr20 : 3931970 .. 3936305 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAAGCAAATTGTCAAAATGCAGACCGTTCCATCTAGAAATCAATGTAGCGTTCCCAAAGGCTATATTGCAGTCTATGTGGGAGATACTGAAAGGAGACGGTTCATGGTTCCAATATCAAGCTTTGCTCAAGAGTGCAGAAGAAGAATTTGGATTTAAACATCCAACTGGAGGATTGACAATTCCTTGTAGAGAAGATGTCTTCATCAATCTCACATCCAAGCTGCAAACTTCCTGAAGAGAGAAAAAAGACAACCCTCCACACAATTTTTTTCCCATTAGTCAGGGATATACTTGCTTGGTATCCGGACTGACTCGGAGAGGAATTTCTTCAGTGGATGTCGAGTCAGTTCGAAAGTCAGTCCCCACAGGAACATAAACAAAGTCAGCAGGGCAAGTAGTAAATCCAGGATCAGTACCCTTCTCAGTCCTATACCCAGTAGGAGCAGCAGAAACGAAGGTTGAAACATCACTAGAGACATAGGTGGGAACATATGATCCACTAGTAGCATCTAAGTAAGCTGCATACCTTCCTGCACCTGCTTCAGTCGTTTTTGTTGATGGAACAGTTAATTAAGCACTTGAATTTGACCGATAGTGATGCTGGTACTACGCCTTTGCTTGCCTTTCTGTTGATGCCTATAGCTTTCTCATCCTACGTTACATGAATATATCTGGATAAGTGAATGATGAACAGTTTGAATGAAATTTAATCTTTTTTAATCTTTTCTGAATTCCCCTTATGTGAAAACTCAAAGTTTCTTAATTGAAACCAAAAGCCTCTACCAAAGGCATACATTTGATGTTCATAAATTTACTGTTTCAATGAAACTAAATCATGACTATTCTATGCTTTCTGTTTAGTCAGATATCAGTTGCAAGAAAATAATTGATGTCCATTTGTATAGTCTTGAAAGAATATGATGAAATGACGAAACAAACCCTGAAATTGAACGAAACTGAAAGCATGACTGAGTATATGTGATTTTAGATTACTATGCTATGTCCCTATTGCATGATATGTTTATGAGATTATACAGAGATGATGATTTAGGGTTCATCGACTAACCCCTAATCGTGAGCCAGACTCGATCATTGGGTCTTTGTATAACATGTTTTTAGAACTGACTACAATGACTTGTACTTTGTGGAGACTATTAAGGGCTTGCTAGTTAATTCCTAAGAGTGAACTTATCTGAGGGTCTGCAGTAGTGTCTTTACGTTTATGAGTTGGTAGAACTAATGAGTGTCTTGTGGGTGCAATTAGGTGTCTCCAACCACTTCCTAACACTTTCACATTATGGGGCTTACTAGGAAGATGTCAACTAAACCCTCCTAGAGAATTTGAGAACAGTGTCCATAACGGTATGAGGAGAACTAGGGGTTGGAACCAACGTCAGGGTCGCGCCTCGAGTACCATAGGCTGATGTGGACAATGTTGATGAAAATGACTAGTAGATAGCTAATCAAGATACCTTAAAACCCTAAAAACCGATGGCCCAAATAGGGCCAAGGAAAAAGAACTTGATAGCTTTTGTCATTTTACCCTAAGTTGAGGTTAGGTGAACCAAGTTAACCGAGGAGATAGCCTAGGAAAGTCAATGACTTAGGAACGAGATTTCTAAGTACGACTAAGATACCGAATGAACGAACAAACTAATGATATAAGACTTAAGAACGAACTAAGAAGCTATAAACAAACTACTTCCTGAGTATTCTTATACTCATTCATGCTATTTTAATCTTCTCAAGTGAGTGCTAGATGGAGCAGTTGAGGCGAGGGTGTACGCTTTAGGGGTTCAAAATAGATCAATGTCTTGTACTTCTCAAATCCTTATGTTACATCTGTCATTTCGATATTGTGCCCAATTGTATTACGAATGCTCTGACGTCCTGATGTTTTAAATGAATGTACTGTTTGATTTGATATTCATTAAATGCACGCACGTTTTAAAAGTTTTAGTTTATCTTATACTTTCAAATACTCAATATCGGTTAGTGACGGCCCGTGGCTCGAGTCTCTCAAGTAAGCCACAAAACATATAATAAAAGAAATAGTTCCATTTCATGTGATCATATATTGATTACAGTTTCAGAGTGCCATTCATTGACATTCTGAAAAGAATTGTTCTTGAATTTCCTACAACATTCTAGTATAAGTTCATAAATGAATCAAGAAACAAGAAAAAAAAAATTCAAAACTTGGTGAATTTTCCTTCTCCTCTTAAAGAGATTTGCAATCTCGAAGTGAGATCGAGAAAGGCATCTTCGTTGCAAGGAATTGTTAGACCACCGTGAGGATGATGAAATCCGAACTCTTCCTCGGCATGTTTGAGCAGCTGCTGGAATGAAGGATGATTCAAGTATGATATTGGAACTACGAACCGTTTCCTTTGTATCGCTCCCACGTAAACTGCTATGTGACCTTTTGGAACATATAGCGGATTTCTGGGGAAGTTTGAACGAACTTGTAGAAATTTCTTGACTTGAAGAATCCAGAATGGCAAATAAATCCCCATTATTAAGCTTGCCTGTTAAAGGTTTGAATTTGATTGGCGTAGAACCAACTTGAAGAGAATGAAAATGAATGTGTTTGAGTTTAATTTGGAGTTGAAACTGACTTGATATCCACATATATATAGTCTTGAAAGAAAATAGTTTTGTAGGTGGTTGGTGCTTTTCCATTGGGCTATTTAAGGTTAGTGTCGAGGTATCTAACCGTTCAAGTCCGCCGCTAACAGACATTATCAACTTTGACTCGTTACGTGTTGCTATCAGCCTTACGGTTTTAAAATGCATCTGTTAGGGAGAGGTTTTTACACCCTTATAAAGAATGTTTCGTTCCCTCTCCAACCGATGTGGGATCTCACAGTCCACCCCCTTGAGGGCCTAGCGTCCTTTCTGGTACACTACCCAAGCCTACCACTAACAGACATTATCCGCTTTGGCCCCTCACGATTTTAAAACCATCTGTTGGGAGAGGTCTTCACACCCTTATAAGGAATACTTCGTTCCCCTCTCCACCCGATGTGGTATCTCACAATCCACTCTCTTTGGGGGGCCTAGCGTCCTCGCCAACATGATACCATTTGCAATAGTCCAAACTCACTGTTGGTGTTATCCGTTTTGACCTGTTACATATCACACTTAACCTCACAATTTTAAAACATGTCTGTTAAAAGAGGTTTTCACACCTTCATAAGGAATGTTTTGTTCCTCTTTTTGACTCTACTTAGGATTGCCCGACTCACTCGACTCAGACATGATCTTTCTCCTATCTTTCTTATTTGTATCTGCCGTCATCCCAGCTTTTTGATTCAGGTAAACAGCACTGAATTCCTGAAGGAAGAACGCACTAGATGGGAAAAGAAAGAACATGATATGAGTGAGATTCGCTTTCACTGCTACAGAAAATGTTGCATCATTGGATAGTCCTGGTTGGATAGGTAGGAGAGGCACCAAATGCATTGAATTGCCGTACAGGTCATTTTAAGGATAAAATCGTGTTCTTTCTTTGTGAAATGTAGTTGCTGAATCCAACTTTCAACAACTTCTGTAATTGGAACCAGCTGTTTACCAACATGAACAAACTCATGATACTAAAACCGTCCTTTTCTATGAACAGTGCCCAAACATTATCCCGTTTGATCTTGCTGACATGGTTGCAATGGTCGCCAATCATAGCTACGATTGATATCACTCAAATGAAATTGATATCCATCTGTGATATGTTAATGATATTGATATCCATCTGTGATATGATTAATGATATCATATCAGTATATAGAAGATATATTATTGATATACTTCATATACTGTGTATAGCTTAACTGATGAAAGGAAATATATAATTTAAGAAATGGAGTATTATAGTTTCGTTCGTATTACTTTTGAAAGTTCATGCATTTTTTGAAACGTGATAGATATTAAAGATTTGTTCTTGTGGTATTGAGATTCGTTCGTATTACTTTTGAAAGTTTATGGTTATTAGTTGAACACGATTCTTCACAATGGTATGATATTTTTCACTTTGAGCATAAGCTCTCGTACTAATGGAGATAGTATTATTTGATTATAGACCCATGATATTCTCTAAATTAGCGGATGTGAGACTTTCATCCAACCATGGATTTTTTAAAACATGGTATTAAAGATTCGTTCGAATTATTTGGAAAGTTTATGGCTTTTTAAAAAATAATTTTTAATTTTTAAAGAAGTTTAGAACTTCGAAGTTCAAGCACTTGACAACGAACCCAAGGCCTGAAGAGACCATGTTCTGGAATCTGCAGCTTGTCCGATTAATACGACGGAAAGGGGTTTCCATGAGGTTATAG

mRNA sequence

ATGCCAAGCAAATTGTCAAAATGCAGACCGTTCCATCTAGAAATCAATGTAGCGTTCCCAAAGGCTATATTGCAGTCTATGTGGGAGATACTGAAAGGAGACGGTTCATGGTTCCAATATCAAGCTTTGCTCAAGAGTGCAGAAGAAGAATTTGGATTTAAACATCCAACTGGAGGATTGACAATTCCTTGTAGAGAAGATAAGTTTAGAACTTCGAAGTTCAAGCACTTGACAACGAACCCAAGGCCTGAAGAGACCATGTTCTGGAATCTGCAGCTTGTCCGATTAATACGACGGAAAGGGGTTTCCATGAGGTTATAG

Coding sequence (CDS)

ATGCCAAGCAAATTGTCAAAATGCAGACCGTTCCATCTAGAAATCAATGTAGCGTTCCCAAAGGCTATATTGCAGTCTATGTGGGAGATACTGAAAGGAGACGGTTCATGGTTCCAATATCAAGCTTTGCTCAAGAGTGCAGAAGAAGAATTTGGATTTAAACATCCAACTGGAGGATTGACAATTCCTTGTAGAGAAGATAAGTTTAGAACTTCGAAGTTCAAGCACTTGACAACGAACCCAAGGCCTGAAGAGACCATGTTCTGGAATCTGCAGCTTGTCCGATTAATACGACGGAAAGGGGTTTCCATGAGGTTATAG
BLAST of CmoCh20G007950 vs. Swiss-Prot
Match: AX10A_SOYBN (Auxin-induced protein X10A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.6e-06
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 1

Query: 40 YQALLKSAEEEFGFKHPTGGLTIPCREDKFRT 72
          +Q LL  AEEEFG+ HP GGLTIPC+ED+F T
Sbjct: 53 FQDLLNQAEEEFGYDHPMGGLTIPCKEDEFLT 84

BLAST of CmoCh20G007950 vs. Swiss-Prot
Match: SAU20_ARATH (Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana GN=SAUR20 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.1e-06
Identity = 25/38 (65.79%), Postives = 29/38 (76.32%), Query Frame = 1

Query: 40 YQALLKSAEEEFGFKHPTGGLTIPCREDKF--RTSKFK 76
          +QALL  +EEEFGF HP GGLTIPC ED F   TS+F+
Sbjct: 53 FQALLSKSEEEFGFDHPMGGLTIPCPEDTFINVTSRFQ 90

BLAST of CmoCh20G007950 vs. Swiss-Prot
Match: SAU19_ARATH (Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana GN=SAUR19 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.6e-06
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 1

Query: 40 YQALLKSAEEEFGFKHPTGGLTIPCREDKF 70
          +QALL  +EEEFGF HP GGLTIPC ED F
Sbjct: 53 FQALLSKSEEEFGFAHPMGGLTIPCPEDTF 82

BLAST of CmoCh20G007950 vs. Swiss-Prot
Match: SAU21_ARATH (Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana GN=SAUR21 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.6e-06
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 1

Query: 40 YQALLKSAEEEFGFKHPTGGLTIPCREDKF 70
          +QALL  +EEEFGF HP GGLTIPC ED F
Sbjct: 51 FQALLSKSEEEFGFDHPMGGLTIPCPEDTF 80

BLAST of CmoCh20G007950 vs. Swiss-Prot
Match: SAU23_ARATH (Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana GN=SAUR23 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.6e-06
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 1

Query: 40 YQALLKSAEEEFGFKHPTGGLTIPCREDKF 70
          +QALL  +EEEFGF HP GGLTIPC ED F
Sbjct: 53 FQALLSKSEEEFGFDHPMGGLTIPCPEDTF 82

BLAST of CmoCh20G007950 vs. TrEMBL
Match: A0A0A0LM71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258780 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.0e-07
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 1

Query: 40 YQALLKSAEEEFGFKHPTGGLTIPCREDKF 70
          + ALLKSAEEEFGFKHPTGGLTIPCRED F
Sbjct: 58 FSALLKSAEEEFGFKHPTGGLTIPCREDVF 87

BLAST of CmoCh20G007950 vs. TAIR10
Match: AT3G03820.1 (AT3G03820.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 53.9 bits (128), Expect = 6.9e-08
Identity = 24/32 (75.00%), Postives = 25/32 (78.12%), Query Frame = 1

Query: 40 YQALLKSAEEEFGFKHPTGGLTIPCREDKFRT 72
          +QALL  AEEEFGF HP GGLTIPC ED F T
Sbjct: 58 FQALLIKAEEEFGFNHPMGGLTIPCPEDTFLT 89

BLAST of CmoCh20G007950 vs. TAIR10
Match: AT2G21200.1 (AT2G21200.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 53.9 bits (128), Expect = 6.9e-08
Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = 1

Query: 40 YQALLKSAEEEFGFKHPTGGLTIPCREDKF 70
          +QALL +AEEEFGF HP GGLTIPC ED F
Sbjct: 50 FQALLSTAEEEFGFDHPMGGLTIPCPEDTF 79

BLAST of CmoCh20G007950 vs. TAIR10
Match: AT4G34800.1 (AT4G34800.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 53.1 bits (126), Expect = 1.2e-07
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 1

Query: 40 YQALLKSAEEEFGFKHPTGGLTIPCREDKF 70
          +Q LL  AEEEFGF HP GGLTIPCRE+ F
Sbjct: 52 FQGLLSRAEEEFGFNHPIGGLTIPCREETF 81

BLAST of CmoCh20G007950 vs. TAIR10
Match: AT5G18020.1 (AT5G18020.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 53.1 bits (126), Expect = 1.2e-07
Identity = 25/38 (65.79%), Postives = 29/38 (76.32%), Query Frame = 1

Query: 40 YQALLKSAEEEFGFKHPTGGLTIPCREDKF--RTSKFK 76
          +QALL  +EEEFGF HP GGLTIPC ED F   TS+F+
Sbjct: 53 FQALLSKSEEEFGFDHPMGGLTIPCPEDTFINVTSRFQ 90

BLAST of CmoCh20G007950 vs. TAIR10
Match: AT5G18030.1 (AT5G18030.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 52.4 bits (124), Expect = 2.0e-07
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 1

Query: 40 YQALLKSAEEEFGFKHPTGGLTIPCREDKF 70
          +QALL  +EEEFGF HP GGLTIPC ED F
Sbjct: 51 FQALLSKSEEEFGFDHPMGGLTIPCPEDTF 80

BLAST of CmoCh20G007950 vs. NCBI nr
Match: gi|659115600|ref|XP_008457637.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 7.2e-07
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 1

Query: 40 YQALLKSAEEEFGFKHPTGGLTIPCREDKF 70
          + ALLKSAEEEFGFKHPTGGLTIPCRED F
Sbjct: 58 FSALLKSAEEEFGFKHPTGGLTIPCREDVF 87

BLAST of CmoCh20G007950 vs. NCBI nr
Match: gi|449458562|ref|XP_004147016.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 7.2e-07
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 1

Query: 40 YQALLKSAEEEFGFKHPTGGLTIPCREDKF 70
          + ALLKSAEEEFGFKHPTGGLTIPCRED F
Sbjct: 58 FSALLKSAEEEFGFKHPTGGLTIPCREDVF 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AX10A_SOYBN1.6e-0668.75Auxin-induced protein X10A OS=Glycine max PE=2 SV=1[more]
SAU20_ARATH2.1e-0665.79Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana GN=SAUR20 PE=2 SV=1[more]
SAU19_ARATH3.6e-0673.33Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana GN=SAUR19 PE=2 SV=1[more]
SAU21_ARATH3.6e-0673.33Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana GN=SAUR21 PE=2 SV=1[more]
SAU23_ARATH3.6e-0673.33Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana GN=SAUR23 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LM71_CUCSA5.0e-0790.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258780 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G03820.16.9e-0875.00 SAUR-like auxin-responsive protein family [more]
AT2G21200.16.9e-0876.67 SAUR-like auxin-responsive protein family [more]
AT4G34800.11.2e-0773.33 SAUR-like auxin-responsive protein family [more]
AT5G18020.11.2e-0765.79 SAUR-like auxin-responsive protein family [more]
AT5G18030.12.0e-0773.33 SAUR-like auxin-responsive protein family [more]
Match NameE-valueIdentityDescription
gi|659115600|ref|XP_008457637.1|7.2e-0790.00PREDICTED: auxin-induced protein 15A-like [Cucumis melo][more]
gi|449458562|ref|XP_004147016.1|7.2e-0790.00PREDICTED: auxin-induced protein 15A-like [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003676SAUR_fam
Vocabulary: Biological Process
TermDefinition
GO:0009733response to auxin
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009733 response to auxin
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G007950.1CmoCh20G007950.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003676Small auxin-up RNAPFAMPF02519Auxin_induciblecoord: 41..70
score: 3.
NoneNo IPR availablePANTHERPTHR31929FAMILY NOT NAMEDcoord: 40..78
score: 1.3
NoneNo IPR availablePANTHERPTHR31929:SF12SUBFAMILY NOT NAMEDcoord: 40..78
score: 1.3

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh20G007950CsaV3_2G015550Cucumber (Chinese Long) v3cmocucB0635
The following gene(s) are paralogous to this gene:

None