CmoCh20G007540 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh20G007540
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionActin depolymerizing factor 5
LocationCmo_Chr20 : 3792216 .. 3793370 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATTTTCAGAGTTCCGAGAGTGTTCACAGACCAGTTCCCGACGAGACCTAACAATGGCGATGGCTTTCAAGATGGTAATAATTTATACACTTCACGGTTATAATCTCTTCTGTATGTATATTTTTTTTTTTCAATTTTTTATGAAATTATGATTCTGATTTGATTTGTTAACGACGAATCTCAGGCAACCACTGGAATGTGGGTGAGCGATGAGTGCAAGAACTCGTTTATGGAGATGAAATGGAAGAAGGTGCATAGGTATATTGTGTTTAAGATCGATGAAGGATCGAGGTTAGTCACCGTTGACAAGGTCGGTGGTCCGGCCGAAAGCTACGATGATCTAACTGCCTCATTGCCGAATGACGACTGTCGATACGCAGTGTTCGATTTCGACTTCGTCACCGTTGATAATTGCCGAAAGAGCAAGATCTTCTTCATCGCGTGGTATGTTGCGCGATTATTTTCTGTTTTTCGTCGATTGCATCCGTCTCATTCATCTAACCTCTATTTCCGTAGAATCGTTCAATTCTCTCTGATAACTTGAATAGCTATGTGGAAATCCTGATGAATTCGACTCAAAATTTCCTCGAATTCGTAATCTCTAGTATGTTGCGCGATTATTTTCTGTTTTTCGTCGATTGCATCCCTCCTTCATTCATCTAACCTCTGTTTCCGTAGAATCGTTCAATTCTCTCTGATTACTTGAATAGCTACACGAAGCTTCTCTTTATGCGGAAATCCTGATGAATTCGACTCAAAATTTCCTCGAATTCATAATCTCTAGTCCTGTTACAGTATCTAGTTAATTAGGTATTGAGAGCAGCAGCATAATCGCACTACTGATCGTAATCGGAATTCTAATTCATTATTTGATTATTCATTTTTCTCTTCAAAGAATTTGACATCGAGTATAGTAATTGATTTTAAAATAGGATGGATCTGAATCTGAAACTCAAACTAAAACCGATCGATTGGTTTGATATGATACAGGTCGCCCACCGCATCAAGAATTAGAGCAAAAATTCTATACGCAACTTCGAAAGCCGGGCTGAGGAGAGTGCTGGAAGGCATTCATTACGAGGTTCAAGCAACCGATCCAACTGAGATGGGGATGGATGTGATCAAGGACAGAGCCAAATAGATCAAAAAAAAAA

mRNA sequence

CAATTTTCAGAGTTCCGAGAGTGTTCACAGACCAGTTCCCGACGAGACCTAACAATGGCGATGGCTTTCAAGATGGCAACCACTGGAATGTGGGTGAGCGATGAGTGCAAGAACTCGTTTATGGAGATGAAATGGAAGAAGGTGCATAGGTATATTGTGTTTAAGATCGATGAAGGATCGAGGTTAGTCACCGTTGACAAGGTCGGTGGTCCGGCCGAAAGCTACGATGATCTAACTGCCTCATTGCCGAATGACGACTGTCGATACGCAGTGTTCGATTTCGACTTCGTCACCGTTGATAATTGCCGAAAGAGCAAGATCTTCTTCATCGCGTGGTCGCCCACCGCATCAAGAATTAGAGCAAAAATTCTATACGCAACTTCGAAAGCCGGGCTGAGGAGAGTGCTGGAAGGCATTCATTACGAGGTTCAAGCAACCGATCCAACTGAGATGGGGATGGATGTGATCAAGGACAGAGCCAAATAGATCAAAAAAAAAA

Coding sequence (CDS)

ATGGCGATGGCTTTCAAGATGGCAACCACTGGAATGTGGGTGAGCGATGAGTGCAAGAACTCGTTTATGGAGATGAAATGGAAGAAGGTGCATAGGTATATTGTGTTTAAGATCGATGAAGGATCGAGGTTAGTCACCGTTGACAAGGTCGGTGGTCCGGCCGAAAGCTACGATGATCTAACTGCCTCATTGCCGAATGACGACTGTCGATACGCAGTGTTCGATTTCGACTTCGTCACCGTTGATAATTGCCGAAAGAGCAAGATCTTCTTCATCGCGTGGTCGCCCACCGCATCAAGAATTAGAGCAAAAATTCTATACGCAACTTCGAAAGCCGGGCTGAGGAGAGTGCTGGAAGGCATTCATTACGAGGTTCAAGCAACCGATCCAACTGAGATGGGGATGGATGTGATCAAGGACAGAGCCAAATAG
Homology
[Close]
BLAST of CmoCh20G007540 vs. Swiss-Prot
Match: ADF5_ARATH (Actin-depolymerizing factor 5 OS=Arabidopsis thaliana GN=ADF5 PE=1 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 3.5e-65
Identity = 122/143 (85.31%), Postives = 130/143 (90.91%), Query Frame = 1 

Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGM V+DEC +SFM+MKWKKVHRYIVFKI+E SR VTVDKVGG  ESY DL
Sbjct: 1   MAMAFKMATTGMRVTDECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHDL 60

Query: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRRVLEG 120
             SLP DDCRYAVFDFDFVTVDNCRKSKIFFIAWSP AS+IRAKILYATSK GLRRVLEG
Sbjct: 61  EDSLPVDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRVLEG 120

Query: 121 IHYEVQATDPTEMGMDVIKDRAK 144
           IHYE+QATDPTEMG D+I+DRAK
Sbjct: 121 IHYELQATDPTEMGFDIIQDRAK 143

[Close]
BLAST of CmoCh20G007540 vs. Swiss-Prot
Match: ADF9_ARATH (Actin-depolymerizing factor 9 OS=Arabidopsis thaliana GN=ADF9 PE=2 SV=2)

HSP 1 Score: 237.3 bits (604), Expect = 1.1e-61
Identity = 109/141 (77.30%), Postives = 125/141 (88.65%), Query Frame = 1 

Query: 3   MAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDLTA 62
           MA K AT+GMW++D+CK SFMEMKWKKVHRY+V+K++E SR VTVDKVG   ESYDDL A
Sbjct: 1   MALKTATSGMWMTDDCKKSFMEMKWKKVHRYVVYKLEEKSRKVTVDKVGAAGESYDDLAA 60

Query: 63  SLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRRVLEGIH 122
           SLP DDCRYAVFDFD+VTVDNCR SKIFFI WSP ASRIR K++YATSK+GLRRVL+G+H
Sbjct: 61  SLPEDDCRYAVFDFDYVTVDNCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVH 120

Query: 123 YEVQATDPTEMGMDVIKDRAK 144
           YE+QATDPTEMG D I+DRAK
Sbjct: 121 YELQATDPTEMGFDKIQDRAK 141

[Close]
BLAST of CmoCh20G007540 vs. Swiss-Prot
Match: ADF5_ORYSJ (Actin-depolymerizing factor 5 OS=Oryza sativa subsp. japonica GN=ADF5 PE=2 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.1e-61
Identity = 112/143 (78.32%), Postives = 127/143 (88.81%), Query Frame = 1 

Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMA+KMAT GM V +EC+  FMEMKWKKVHR++V+KIDE SR V VDKVGGP E Y++L
Sbjct: 1   MAMAYKMATEGMNVKEECQRWFMEMKWKKVHRFVVYKIDERSRAVLVDKVGGPGEGYEEL 60

Query: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRRVLEG 120
            A+LP DDCRYAVFDFDFVTVDNC+KSKIFFIAWSPTASRIRAKILYATSK GLRRVL+G
Sbjct: 61  VAALPTDDCRYAVFDFDFVTVDNCQKSKIFFIAWSPTASRIRAKILYATSKQGLRRVLDG 120

Query: 121 IHYEVQATDPTEMGMDVIKDRAK 144
           +HYEVQATD +EMG DVI+ RA+
Sbjct: 121 VHYEVQATDSSEMGYDVIRGRAQ 143

[Close]
BLAST of CmoCh20G007540 vs. Swiss-Prot
Match: ADF_VITVI (Actin-depolymerizing factor OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 5.5e-50
Identity = 89/135 (65.93%), Postives = 116/135 (85.93%), Query Frame = 1 

Query: 8   ATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDLTASLPND 67
           A++GM V+D  KN+F+E+K KKVHRY++FKIDE  + V V+K GGPAES+D+  A+LP +
Sbjct: 8   ASSGMGVADHSKNTFLELKRKKVHRYVIFKIDEKKKEVVVEKTGGPAESFDEFAAALPEN 67

Query: 68  DCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRRVLEGIHYEVQA 127
           DCRYAV+DFDFVT +NC+KSKIFFIAWSP +SRIRAK+LYATSK   RR L+G+HYE+QA
Sbjct: 68  DCRYAVYDFDFVTSENCQKSKIFFIAWSPDSSRIRAKMLYATSKERFRRELDGVHYEIQA 127

Query: 128 TDPTEMGMDVIKDRA 143
           TDPTEM ++V+++RA
Sbjct: 128 TDPTEMDLEVLRERA 142

[Close]
BLAST of CmoCh20G007540 vs. Swiss-Prot
Match: ADF6_ARATH (Actin-depolymerizing factor 6 OS=Arabidopsis thaliana GN=ADF6 PE=1 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 3.3e-47
Identity = 86/135 (63.70%), Postives = 111/135 (82.22%), Query Frame = 1 

Query: 8   ATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDLTASLPND 67
           A +GM V+DE K +F+E++ KK HRY+VFKIDE  + V V+K G P ESYDD  ASLP++
Sbjct: 11  AISGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESYDDFLASLPDN 70

Query: 68  DCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRRVLEGIHYEVQA 127
           DCRYAV+DFDFVT +NC+KSKIFF AWSP+ S IRAK+LY+TSK  L R L+GIHYE+QA
Sbjct: 71  DCRYAVYDFDFVTSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRELQGIHYEIQA 130

Query: 128 TDPTEMGMDVIKDRA 143
           TDPTE+ ++V+++RA
Sbjct: 131 TDPTEVDLEVLRERA 145

[Close]
BLAST of CmoCh20G007540 vs. TrEMBL
Match: A0A0A0LLM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G270170 PE=3 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 5.8e-75
Identity = 140/143 (97.90%), Postives = 141/143 (98.60%), Query Frame = 1 

Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL
Sbjct: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60

Query: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRRVLEG 120
           TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPT SRIRAKILYATSK GLRRVLEG
Sbjct: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTESRIRAKILYATSKDGLRRVLEG 120

Query: 121 IHYEVQATDPTEMGMDVIKDRAK 144
           IHYEVQATDPTEMG+DVIKDRAK
Sbjct: 121 IHYEVQATDPTEMGIDVIKDRAK 143

[Close]
BLAST of CmoCh20G007540 vs. TrEMBL
Match: M5VKV7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013033mg PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 1.3e-71
Identity = 133/143 (93.01%), Postives = 139/143 (97.20%), Query Frame = 1 

Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGMWV+DECK+SFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGP ESYDDL
Sbjct: 1   MAMAFKMATTGMWVTDECKSSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPGESYDDL 60

Query: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRRVLEG 120
            ASLP DDCRYAVFDFDFVTVDNCRKSK+FFIAWSP+ASRIRAKILYATSKAGLRRVL+G
Sbjct: 61  AASLPKDDCRYAVFDFDFVTVDNCRKSKLFFIAWSPSASRIRAKILYATSKAGLRRVLDG 120

Query: 121 IHYEVQATDPTEMGMDVIKDRAK 144
           I YE+QATDPTEMGMDVIKDRAK
Sbjct: 121 ISYELQATDPTEMGMDVIKDRAK 143

[Close]
BLAST of CmoCh20G007540 vs. TrEMBL
Match: A0A061E643_THECC (Actin depolymerizing factor 5 OS=Theobroma cacao GN=TCM_006647 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 6.7e-71
Identity = 132/142 (92.96%), Postives = 137/142 (96.48%), Query Frame = 1 

Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGMWV+DECKNSFMEMKWKKVHRYIVFKIDE SRLVTVDKVGGP ESYDDL
Sbjct: 45  MAMAFKMATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRLVTVDKVGGPGESYDDL 104

Query: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRRVLEG 120
            ASLP DDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAK+LYATSK GLRRVL+G
Sbjct: 105 AASLPTDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKMLYATSKDGLRRVLDG 164

Query: 121 IHYEVQATDPTEMGMDVIKDRA 143
           IHYEVQATDPTEMG+DVIKD+A
Sbjct: 165 IHYEVQATDPTEMGIDVIKDKA 186

[Close]
BLAST of CmoCh20G007540 vs. TrEMBL
Match: A0A067K3K1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18795 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 1.9e-70
Identity = 131/143 (91.61%), Postives = 137/143 (95.80%), Query Frame = 1 

Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGMWV+DECKNSFMEMKWKKVHR+IVFKIDE SRLVTVDKVGGP E YD+L
Sbjct: 1   MAMAFKMATTGMWVTDECKNSFMEMKWKKVHRFIVFKIDEKSRLVTVDKVGGPGEGYDEL 60

Query: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRRVLEG 120
            ASLP+DDCRYAV+DFDFVTVDNCRKSKIFFIAWSPTASRIRAK+LYATSK GLRRVLEG
Sbjct: 61  AASLPDDDCRYAVYDFDFVTVDNCRKSKIFFIAWSPTASRIRAKMLYATSKDGLRRVLEG 120

Query: 121 IHYEVQATDPTEMGMDVIKDRAK 144
           IHYEVQATDPTEMG DVIKDRAK
Sbjct: 121 IHYEVQATDPTEMGFDVIKDRAK 143

[Close]
BLAST of CmoCh20G007540 vs. TrEMBL
Match: W9R6W2_9ROSA (Actin-depolymerizing factor 5 OS=Morus notabilis GN=L484_024991 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 2.5e-70
Identity = 131/143 (91.61%), Postives = 137/143 (95.80%), Query Frame = 1 

Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGMWV+DECKNSFMEMKWKKVHRYIVFKIDE S+LVTVDKVGG  ESYDDL
Sbjct: 1   MAMAFKMATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGSGESYDDL 60

Query: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRRVLEG 120
             SLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAW+PTASRIRAK+LYATSK GLRRVL+G
Sbjct: 61  AKSLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDG 120

Query: 121 IHYEVQATDPTEMGMDVIKDRAK 144
           IHYEVQATDPTEMGMDVI+DRAK
Sbjct: 121 IHYEVQATDPTEMGMDVIQDRAK 143

[Close]
BLAST of CmoCh20G007540 vs. TAIR10
Match: AT2G16700.1 (AT2G16700.1 actin depolymerizing factor 5)

HSP 1 Score: 248.8 bits (634), Expect = 2.0e-66
Identity = 122/143 (85.31%), Postives = 130/143 (90.91%), Query Frame = 1 

Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGM V+DEC +SFM+MKWKKVHRYIVFKI+E SR VTVDKVGG  ESY DL
Sbjct: 1   MAMAFKMATTGMRVTDECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHDL 60

Query: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRRVLEG 120
             SLP DDCRYAVFDFDFVTVDNCRKSKIFFIAWSP AS+IRAKILYATSK GLRRVLEG
Sbjct: 61  EDSLPVDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRVLEG 120

Query: 121 IHYEVQATDPTEMGMDVIKDRAK 144
           IHYE+QATDPTEMG D+I+DRAK
Sbjct: 121 IHYELQATDPTEMGFDIIQDRAK 143

[Close]
BLAST of CmoCh20G007540 vs. TAIR10
Match: AT4G34970.1 (AT4G34970.1 actin depolymerizing factor 9)

HSP 1 Score: 237.3 bits (604), Expect = 6.0e-63
Identity = 109/141 (77.30%), Postives = 125/141 (88.65%), Query Frame = 1 

Query: 3   MAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDLTA 62
           MA K AT+GMW++D+CK SFMEMKWKKVHRY+V+K++E SR VTVDKVG   ESYDDL A
Sbjct: 1   MALKTATSGMWMTDDCKKSFMEMKWKKVHRYVVYKLEEKSRKVTVDKVGAAGESYDDLAA 60

Query: 63  SLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRRVLEGIH 122
           SLP DDCRYAVFDFD+VTVDNCR SKIFFI WSP ASRIR K++YATSK+GLRRVL+G+H
Sbjct: 61  SLPEDDCRYAVFDFDYVTVDNCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVH 120

Query: 123 YEVQATDPTEMGMDVIKDRAK 144
           YE+QATDPTEMG D I+DRAK
Sbjct: 121 YELQATDPTEMGFDKIQDRAK 141

[Close]
BLAST of CmoCh20G007540 vs. TAIR10
Match: AT2G31200.1 (AT2G31200.1 actin depolymerizing factor 6)

HSP 1 Score: 189.1 bits (479), Expect = 1.9e-48
Identity = 86/135 (63.70%), Postives = 111/135 (82.22%), Query Frame = 1 

Query: 8   ATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDLTASLPND 67
           A +GM V+DE K +F+E++ KK HRY+VFKIDE  + V V+K G P ESYDD  ASLP++
Sbjct: 11  AISGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESYDDFLASLPDN 70

Query: 68  DCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRRVLEGIHYEVQA 127
           DCRYAV+DFDFVT +NC+KSKIFF AWSP+ S IRAK+LY+TSK  L R L+GIHYE+QA
Sbjct: 71  DCRYAVYDFDFVTSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRELQGIHYEIQA 130

Query: 128 TDPTEMGMDVIKDRA 143
           TDPTE+ ++V+++RA
Sbjct: 131 TDPTEVDLEVLRERA 145

[Close]
BLAST of CmoCh20G007540 vs. TAIR10
Match: AT4G00680.1 (AT4G00680.1 actin depolymerizing factor 8)

HSP 1 Score: 180.6 bits (457), Expect = 6.6e-46
Identity = 80/134 (59.70%), Postives = 110/134 (82.09%), Query Frame = 1 

Query: 8   ATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDLTASLPND 67
           + +GM V+DECK  F+E+K K+ +R+IVFKIDE ++ V ++K+G P E+YDD T+S+P+D
Sbjct: 4   SASGMHVNDECKIKFLELKAKRTYRFIVFKIDEKAQQVQIEKLGNPEETYDDFTSSIPDD 63

Query: 68  DCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRRVLEGIHYEVQA 127
           +CRYAV+DFDF T DNC+KSKIFFIAWSP  SR+R+K+LYA+SK   +R +EGI  E+QA
Sbjct: 64  ECRYAVYDFDFTTEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVELQA 123

Query: 128 TDPTEMGMDVIKDR 142
           TDP+EM +D+IK R
Sbjct: 124 TDPSEMSLDIIKGR 137

[Close]
BLAST of CmoCh20G007540 vs. TAIR10
Match: AT1G01750.1 (AT1G01750.1 actin depolymerizing factor 11)

HSP 1 Score: 176.4 bits (446), Expect = 1.3e-44
Identity = 79/134 (58.96%), Postives = 108/134 (80.60%), Query Frame = 1 

Query: 8   ATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDLTASLPND 67
           + +GM VSDECK  F+E+K K+ +R+IVFKIDE ++ V +DK+G P E+Y+D T S+P D
Sbjct: 4   SASGMHVSDECKLKFLELKAKRNYRFIVFKIDEKAQQVMIDKLGNPEETYEDFTRSIPED 63

Query: 68  DCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRRVLEGIHYEVQA 127
           +CRYAV+D+DF T +NC+KSKIFFIAWSP  SR+R+K+LYA+SK   +R L+GI  E+QA
Sbjct: 64  ECRYAVYDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQA 123

Query: 128 TDPTEMGMDVIKDR 142
           TDP+EM +D+IK R
Sbjct: 124 TDPSEMSLDIIKGR 137

[Close]
BLAST of CmoCh20G007540 vs. NCBI nr
Match: gi|449458600|ref|XP_004147035.1| (PREDICTED: actin-depolymerizing factor 5 [Cucumis sativus])

HSP 1 Score: 288.1 bits (736), Expect = 8.4e-75
Identity = 140/143 (97.90%), Postives = 141/143 (98.60%), Query Frame = 1 

Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL
Sbjct: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60

Query: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRRVLEG 120
           TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPT SRIRAKILYATSK GLRRVLEG
Sbjct: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTESRIRAKILYATSKDGLRRVLEG 120

Query: 121 IHYEVQATDPTEMGMDVIKDRAK 144
           IHYEVQATDPTEMG+DVIKDRAK
Sbjct: 121 IHYEVQATDPTEMGIDVIKDRAK 143

[Close]
BLAST of CmoCh20G007540 vs. NCBI nr
Match: gi|595793649|ref|XP_007200573.1| (hypothetical protein PRUPE_ppa013033mg [Prunus persica])

HSP 1 Score: 276.9 bits (707), Expect = 1.9e-71
Identity = 133/143 (93.01%), Postives = 139/143 (97.20%), Query Frame = 1 

Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGMWV+DECK+SFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGP ESYDDL
Sbjct: 1   MAMAFKMATTGMWVTDECKSSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPGESYDDL 60

Query: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRRVLEG 120
            ASLP DDCRYAVFDFDFVTVDNCRKSK+FFIAWSP+ASRIRAKILYATSKAGLRRVL+G
Sbjct: 61  AASLPKDDCRYAVFDFDFVTVDNCRKSKLFFIAWSPSASRIRAKILYATSKAGLRRVLDG 120

Query: 121 IHYEVQATDPTEMGMDVIKDRAK 144
           I YE+QATDPTEMGMDVIKDRAK
Sbjct: 121 ISYELQATDPTEMGMDVIKDRAK 143

[Close]
BLAST of CmoCh20G007540 vs. NCBI nr
Match: gi|694450213|ref|XP_009350564.1| (PREDICTED: actin-depolymerizing factor 5 [Pyrus x bretschneideri])

HSP 1 Score: 275.0 bits (702), Expect = 7.3e-71
Identity = 132/143 (92.31%), Postives = 138/143 (96.50%), Query Frame = 1 

Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGMWV+DECK SFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAE+YDDL
Sbjct: 1   MAMAFKMATTGMWVTDECKKSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAENYDDL 60

Query: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRRVLEG 120
            ASLP DDCRYAVFDFDFVTVDNCRKSK+FFIAWSP+ SRIRAKILYATSKAGLRRVL+G
Sbjct: 61  AASLPKDDCRYAVFDFDFVTVDNCRKSKLFFIAWSPSESRIRAKILYATSKAGLRRVLDG 120

Query: 121 IHYEVQATDPTEMGMDVIKDRAK 144
           I YE+QATDPTEMGMDVIKDRAK
Sbjct: 121 ISYELQATDPTEMGMDVIKDRAK 143

[Close]
BLAST of CmoCh20G007540 vs. NCBI nr
Match: gi|590684515|ref|XP_007041872.1| (Actin depolymerizing factor 5 [Theobroma cacao])

HSP 1 Score: 274.6 bits (701), Expect = 9.6e-71
Identity = 132/142 (92.96%), Postives = 137/142 (96.48%), Query Frame = 1 

Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGMWV+DECKNSFMEMKWKKVHRYIVFKIDE SRLVTVDKVGGP ESYDDL
Sbjct: 45  MAMAFKMATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRLVTVDKVGGPGESYDDL 104

Query: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRRVLEG 120
            ASLP DDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAK+LYATSK GLRRVL+G
Sbjct: 105 AASLPTDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKMLYATSKDGLRRVLDG 164

Query: 121 IHYEVQATDPTEMGMDVIKDRA 143
           IHYEVQATDPTEMG+DVIKD+A
Sbjct: 165 IHYEVQATDPTEMGIDVIKDKA 186

[Close]
BLAST of CmoCh20G007540 vs. NCBI nr
Match: gi|1009151097|ref|XP_015893371.1| (PREDICTED: actin-depolymerizing factor 5-like [Ziziphus jujuba])

HSP 1 Score: 273.9 bits (699), Expect = 1.6e-70
Identity = 131/143 (91.61%), Postives = 137/143 (95.80%), Query Frame = 1 

Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGMWV+DECKNSF EMKWKKVH+YIVFKIDEGS+LVTVDKVGGP ESYDDL
Sbjct: 1   MAMAFKMATTGMWVTDECKNSFHEMKWKKVHKYIVFKIDEGSKLVTVDKVGGPGESYDDL 60

Query: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRRVLEG 120
            ASLP DDCRYAVFDFDFVTVDNCRKSKIFFIAW+PTASRIRAK+LYATSK GLRRVL+G
Sbjct: 61  AASLPTDDCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDG 120

Query: 121 IHYEVQATDPTEMGMDVIKDRAK 144
           IHYEVQATDP EMGMDVIKDRAK
Sbjct: 121 IHYEVQATDPDEMGMDVIKDRAK 143

The following BLAST results are available for this feature:
BLAST of CmoCh20G007540 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ADF5_ARATH3.5e-6585.31Actin-depolymerizing factor 5 OS=Arabidopsis thaliana GN=ADF5 PE=1 SV=1[more]
ADF9_ARATH1.1e-6177.30Actin-depolymerizing factor 9 OS=Arabidopsis thaliana GN=ADF9 PE=2 SV=2[more]
ADF5_ORYSJ3.1e-6178.32Actin-depolymerizing factor 5 OS=Oryza sativa subsp. japonica GN=ADF5 PE=2 SV=1[more]
ADF_VITVI5.5e-5065.93Actin-depolymerizing factor OS=Vitis vinifera PE=2 SV=1[more]
ADF6_ARATH3.3e-4763.70Actin-depolymerizing factor 6 OS=Arabidopsis thaliana GN=ADF6 PE=1 SV=1[more]
BLAST of CmoCh20G007540 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLM1_CUCSA5.8e-7597.90Uncharacterized protein OS=Cucumis sativus GN=Csa_2G270170 PE=3 SV=1[more]
M5VKV7_PRUPE1.3e-7193.01Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013033mg PE=3 SV=1[more]
A0A061E643_THECC6.7e-7192.96Actin depolymerizing factor 5 OS=Theobroma cacao GN=TCM_006647 PE=3 SV=1[more]
A0A067K3K1_JATCU1.9e-7091.61Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18795 PE=3 SV=1[more]
W9R6W2_9ROSA2.5e-7091.61Actin-depolymerizing factor 5 OS=Morus notabilis GN=L484_024991 PE=3 SV=1[more]
BLAST of CmoCh20G007540 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G16700.12.0e-6685.31 actin depolymerizing factor 5[more]
AT4G34970.16.0e-6377.30 actin depolymerizing factor 9[more]
AT2G31200.11.9e-4863.70 actin depolymerizing factor 6[more]
AT4G00680.16.6e-4659.70 actin depolymerizing factor 8[more]
AT1G01750.11.3e-4458.96 actin depolymerizing factor 11[more]
BLAST of CmoCh20G007540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449458600|ref|XP_004147035.1|8.4e-7597.90PREDICTED: actin-depolymerizing factor 5 [Cucumis sativus][more]
gi|595793649|ref|XP_007200573.1|1.9e-7193.01hypothetical protein PRUPE_ppa013033mg [Prunus persica][more]
gi|694450213|ref|XP_009350564.1|7.3e-7192.31PREDICTED: actin-depolymerizing factor 5 [Pyrus x bretschneideri][more]
gi|590684515|ref|XP_007041872.1|9.6e-7192.96Actin depolymerizing factor 5 [Theobroma cacao][more]
gi|1009151097|ref|XP_015893371.1|1.6e-7091.61PREDICTED: actin-depolymerizing factor 5-like [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002108ADF-H
IPR017904ADF/Cofilin
Vocabulary: Molecular Function
TermDefinition
GO:0003779actin binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0015629actin cytoskeleton
Vocabulary: Biological Process
TermDefinition
GO:0030042actin filament depolymerization
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030042 actin filament depolymerization
cellular_component GO:0015629 actin cytoskeleton
cellular_component GO:0005622 intracellular
molecular_function GO:0003779 actin binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G007540.1CmoCh20G007540.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002108Actin-depolymerising factor homology domainPFAMPF00241Cofilin_ADFcoord: 18..140
score: 4.9
IPR002108Actin-depolymerising factor homology domainSMARTSM00102adf_2coord: 16..143
score: 7.2
IPR002108Actin-depolymerising factor homology domainPROFILEPS51263ADF_Hcoord: 11..143
score: 36
IPR017904ADF/Cofilin/DestrinPANTHERPTHR11913COFILIN-RELATEDcoord: 7..142
score: 3.8E
NoneNo IPR availablePANTHERPTHR11913:SF16ACTIN-DEPOLYMERIZING FACTOR 5-RELATEDcoord: 7..142
score: 3.8E
NoneNo IPR availableunknownSSF55753Actin depolymerizing proteinscoord: 6..141
score: 1.28

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh20G007540Cucsa.234350Cucumber (Gy14) v1cgycmoB0647
CmoCh20G007540CmaCh20G007580Cucurbita maxima (Rimu)cmacmoB551
CmoCh20G007540CmaCh02G002460Cucurbita maxima (Rimu)cmacmoB614
CmoCh20G007540Cla020290Watermelon (97103) v1cmowmB523
CmoCh20G007540Csa2G270170Cucumber (Chinese Long) v2cmocuB531
CmoCh20G007540MELO3C020809Melon (DHL92) v3.5.1cmomeB484
CmoCh20G007540ClCG02G011820Watermelon (Charleston Gray)cmowcgB492
CmoCh20G007540CSPI02G13460Wild cucumber (PI 183967)cmocpiB536
CmoCh20G007540Lsi10G004870Bottle gourd (USVL1VR-Ls)cmolsiB491
CmoCh20G007540Cp4.1LG16g03020Cucurbita pepo (Zucchini)cmocpeB517
CmoCh20G007540Cp4.1LG05g13810Cucurbita pepo (Zucchini)cmocpeB528
CmoCh20G007540MELO3C020809.2Melon (DHL92) v3.6.1cmomedB559
CmoCh20G007540CsaV3_2G015980Cucumber (Chinese Long) v3cmocucB0637
CmoCh20G007540Cla97C02G037430Watermelon (97103) v2cmowmbB559
CmoCh20G007540Bhi10G001470Wax gourdcmowgoB0679
CmoCh20G007540CsGy2G013350Cucumber (Gy14) v2cgybcmoB209
CmoCh20G007540Carg05166Silver-seed gourdcarcmoB1093
CmoCh20G007540Carg16179Silver-seed gourdcarcmoB0473
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh20G007540CmoCh02G002470Cucurbita moschata (Rifu)cmocmoB412
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh20G007540Wax gourdcmowgoB0673
CmoCh20G007540Cucurbita moschata (Rifu)cmocmoB116
CmoCh20G007540Cucurbita moschata (Rifu)cmocmoB383
CmoCh20G007540Cucurbita moschata (Rifu)cmocmoB417
CmoCh20G007540Cucumber (Gy14) v1cgycmoB1026
CmoCh20G007540Cucurbita maxima (Rimu)cmacmoB149
CmoCh20G007540Cucurbita maxima (Rimu)cmacmoB516
CmoCh20G007540Wild cucumber (PI 183967)cmocpiB567
CmoCh20G007540Cucumber (Chinese Long) v2cmocuB561
CmoCh20G007540Melon (DHL92) v3.5.1cmomeB503
CmoCh20G007540Melon (DHL92) v3.5.1cmomeB512
CmoCh20G007540Watermelon (Charleston Gray)cmowcgB483
CmoCh20G007540Watermelon (97103) v1cmowmB511
CmoCh20G007540Watermelon (97103) v1cmowmB514
CmoCh20G007540Cucurbita pepo (Zucchini)cmocpeB511
CmoCh20G007540Cucurbita pepo (Zucchini)cmocpeB513
CmoCh20G007540Cucurbita pepo (Zucchini)cmocpeB525
CmoCh20G007540Bottle gourd (USVL1VR-Ls)cmolsiB501
CmoCh20G007540Cucumber (Gy14) v2cgybcmoB787
CmoCh20G007540Cucumber (Gy14) v2cgybcmoB939
CmoCh20G007540Melon (DHL92) v3.6.1cmomedB578
CmoCh20G007540Melon (DHL92) v3.6.1cmomedB590
CmoCh20G007540Silver-seed gourdcarcmoB0435
CmoCh20G007540Silver-seed gourdcarcmoB0549
CmoCh20G007540Silver-seed gourdcarcmoB1369
CmoCh20G007540Cucumber (Chinese Long) v3cmocucB0669
CmoCh20G007540Cucumber (Chinese Long) v3cmocucB0671
CmoCh20G007540Watermelon (97103) v2cmowmbB553