CmoCh20G006940 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATACGTAAAAATTTACTTATAAATGTTCAATACTTAAAACCTCATTTTCTCATCCTCAAGCTCATAACCAAATTCCTCTCTCTCTCTCTCAAGTTTTGTACCGACACTATATTCTCTCTCTTCGGTCTCGACCAAAATGAAGGTACGTACTCAGTTGAAAACATTACTGTTATCGATGAGTTAATTGTTTTCATGTCAAATTTTAACGGTTTTTGCAGCAAAAGATAGTGATTAAAGTATCGATGAAGGAGGGGGCTAAGTATCGTAGCAAAGCCTTGAAGATTGTAGCATCTGTCTCGGGTAAATTATGCGTACATATAATATAATCTATTTGAATTTCAATGAATTAAAAGAAATATTATTGAAAAATTATGCAAATTACAGGGAATATTGAGACGATCGGCTTGGTGGGCGATAACAAGGATAAATTAGAGGTAGTTGGAGATCTTGACCCGATCAAACTCATCGAGGTGCTCCGAAAGAAATTTAGTTACGCGCAGTTGGAGTCTGTGAGCATAGTTGAAGTCAAGGACGAAGACAAGGACAAAGACGAAGACAAAAATGAACCTGAAATAACTTGGACGTGCTCATGTGGGGTGCCTCATCAAACTCCGTATAGCCATTGTTACCTTAGCCCCGACCCGACCTATTGCATATGGTAATTCATGAAAGTAGTATAAATCTCTCCGATATAATCTACGTCTTTTTGTTTTAATTTGAAGCGTGAAAAATTATCTATATAATTATTTTTCGACATAGATTATTTCAAATGGTACGTAGATATGTGTCGAAAATTCAAAAAAGTTGTAATCGTCAATATATAGACCAAAATCATCAGCCTAT TATACGTAAAAATTTACTTATAAATGTTCAATACTTAAAACCTCATTTTCTCATCCTCAAGCTCATAACCAAATTCCTCTCTCTCTCTCTCAAGTTTTGTACCGACACTATATTCTCTCTCTTCGGTCTCGACCAAAATGAAGCAAAAGATAGTGATTAAAGTATCGATGAAGGAGGGGGCTAAGTATCGTAGCAAAGCCTTGAAGATTGTAGCATCTGTCTCGGGGAATATTGAGACGATCGGCTTGGTGGGCGATAACAAGGATAAATTAGAGGTAGTTGGAGATCTTGACCCGATCAAACTCATCGAGGTGCTCCGAAAGAAATTTAGTTACGCGCAGTTGGAGTCTGTGAGCATAGTTGAAGTCAAGGACGAAGACAAGGACAAAGACGAAGACAAAAATGAACCTGAAATAACTTGGACGTGCTCATGTGGGGTGCCTCATCAAACTCCGTATAGCCATTGTTACCTTAGCCCCGACCCGACCTATTGCATATGGTAATTCATGAAAGTAGTATAAATCTCTCCGATATAATCTACGTCTTTTTGTTTTAATTTGAAGCGTGAAAAATTATCTATATAATTATTTTTCGACATAGATTATTTCAAATGGTACGTAGATATGTGTCGAAAATTCAAAAAAGTTGTAATCGTCAATATATAGACCAAAATCATCAGCCTAT ATGAAGCAAAAGATAGTGATTAAAGTATCGATGAAGGAGGGGGCTAAGTATCGTAGCAAAGCCTTGAAGATTGTAGCATCTGTCTCGGGGAATATTGAGACGATCGGCTTGGTGGGCGATAACAAGGATAAATTAGAGGTAGTTGGAGATCTTGACCCGATCAAACTCATCGAGGTGCTCCGAAAGAAATTTAGTTACGCGCAGTTGGAGTCTGTGAGCATAGTTGAAGTCAAGGACGAAGACAAGGACAAAGACGAAGACAAAAATGAACCTGAAATAACTTGGACGTGCTCATGTGGGGTGCCTCATCAAACTCCGTATAGCCATTGTTACCTTAGCCCCGACCCGACCTATTGCATATGGTAA
BLAST of CmoCh20G006940 vs. TrEMBL
Match: A0A0A0KAU7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113600 PE=4 SV=1) HSP 1 Score: 152.5 bits (384), Expect = 3.2e-34 Identity = 83/122 (68.03%), Postives = 96/122 (78.69%), Query Frame = 1
BLAST of CmoCh20G006940 vs. TrEMBL
Match: A0A164WBG7_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_021079 PE=4 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 7.0e-13 Identity = 54/120 (45.00%), Postives = 78/120 (65.00%), Query Frame = 1
BLAST of CmoCh20G006940 vs. TrEMBL
Match: B9SF21_RICCO (Metal ion binding protein, putative OS=Ricinus communis GN=RCOM_1213020 PE=4 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 2.9e-11 Identity = 58/125 (46.40%), Postives = 78/125 (62.40%), Query Frame = 1
BLAST of CmoCh20G006940 vs. TrEMBL
Match: M7ZY88_TRIUA (Uncharacterized protein OS=Triticum urartu GN=TRIUR3_01189 PE=4 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 2.9e-11 Identity = 54/108 (50.00%), Postives = 69/108 (63.89%), Query Frame = 1
BLAST of CmoCh20G006940 vs. TrEMBL
Match: A0A0D2QTX7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G164100 PE=4 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 6.6e-11 Identity = 46/85 (54.12%), Postives = 62/85 (72.94%), Query Frame = 1
BLAST of CmoCh20G006940 vs. TAIR10
Match: AT3G07600.1 (AT3G07600.1 Heavy metal transport/detoxification superfamily protein ) HSP 1 Score: 57.0 bits (136), Expect = 9.4e-09 Identity = 41/124 (33.06%), Postives = 69/124 (55.65%), Query Frame = 1
BLAST of CmoCh20G006940 vs. TAIR10
Match: AT5G48290.1 (AT5G48290.1 Heavy metal transport/detoxification superfamily protein ) HSP 1 Score: 52.8 bits (125), Expect = 1.8e-07 Identity = 37/89 (41.57%), Postives = 60/89 (67.42%), Query Frame = 1
BLAST of CmoCh20G006940 vs. NCBI nr
Match: gi|659094578|ref|XP_008448137.1| (PREDICTED: uncharacterized protein LOC103490424 [Cucumis melo]) HSP 1 Score: 153.3 bits (386), Expect = 2.7e-34 Identity = 82/121 (67.77%), Postives = 99/121 (81.82%), Query Frame = 1
BLAST of CmoCh20G006940 vs. NCBI nr
Match: gi|449444610|ref|XP_004140067.1| (PREDICTED: uncharacterized protein LOC101216311 [Cucumis sativus]) HSP 1 Score: 152.5 bits (384), Expect = 4.6e-34 Identity = 83/122 (68.03%), Postives = 96/122 (78.69%), Query Frame = 1
BLAST of CmoCh20G006940 vs. NCBI nr
Match: gi|1021033772|gb|KZM91556.1| (hypothetical protein DCAR_021079 [Daucus carota subsp. sativus]) HSP 1 Score: 81.6 bits (200), Expect = 1.0e-12 Identity = 54/120 (45.00%), Postives = 78/120 (65.00%), Query Frame = 1
BLAST of CmoCh20G006940 vs. NCBI nr
Match: gi|502134386|ref|XP_004502101.1| (PREDICTED: uncharacterized protein LOC101495677 [Cicer arietinum]) HSP 1 Score: 81.3 bits (199), Expect = 1.3e-12 Identity = 56/126 (44.44%), Postives = 77/126 (61.11%), Query Frame = 1
BLAST of CmoCh20G006940 vs. NCBI nr
Match: gi|296085070|emb|CBI28485.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 77.0 bits (188), Expect = 2.5e-11 Identity = 52/121 (42.98%), Postives = 74/121 (61.16%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |