CmoCh20G006250 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh20G006250
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Beta-1,3-galactosyltransferase-like protein
Location	Cmo_Chr20 : 3075754 .. 3076244 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGGGAAAAGCAAGGCGAATCATCATCACTCTTCAAGAACTCTCGTATCCCGGAAATGGACACTCTTCCTTTGCTTGGCTAGCTTTTGCTCTGGAATGCTCTTCACCAACAGGTTTCGAACTCAGATTATTACTCTCTCAAATGGGTTTCTTGTTTGTTTCTCGATTTCCTGCTTACTTTTCAATTCTGCGATTCTTAAACTATTCTGCTGATGTTTGGGAATATTGTGTTCTTTTCACCACGTTTGTTGGTTTGCCCAGATGATCCAAAAGGACGCGTGTTCTGTGATTTTGTTTTCTTCTTGTTCTTTTCTTCTCTCTCTCTCTCTCTCTCTCTCCTAATAATGAATGGGGAGTTTGGTGGGTCTCATGTTTGCTTCCTTTTTCTTGTTCTTTTTTTGATTCAATTGATTTGGAATTAGTATTACCAGCAATTGCATTTATCAATACTCTTCCCATATATGAACAACTTGCTAGACTGCGGTTGA

mRNA sequence

ATGTGTGGGAAAAGCAAGGCGAATCATCATCACTCTTCAAGAACTCTCGTATCCCGGAAATGGACACTCTTCCTTTGCTTGGCTAGCTTTTGCTCTGGAATGCTCTTCACCAACAGGTTTCGAACTCAGATTATTACTCTCTCAAATGGGTTTCTTTATTACCAGCAATTGCATTTATCAATACTCTTCCCATATATGAACAACTTGCTAGACTGCGGTTGA

Coding sequence (CDS)

ATGTGTGGGAAAAGCAAGGCGAATCATCATCACTCTTCAAGAACTCTCGTATCCCGGAAATGGACACTCTTCCTTTGCTTGGCTAGCTTTTGCTCTGGAATGCTCTTCACCAACAGGTTTCGAACTCAGATTATTACTCTCTCAAATGGGTTTCTTTATTACCAGCAATTGCATTTATCAATACTCTTCCCATATATGAACAACTTGCTAGACTGCGGTTGA

Homology

[Close]

BLAST of CmoCh20G006250 vs. Swiss-Prot
Match: B3GT2_ARATH (Probable beta-1,3-galactosyltransferase 2 OS=Arabidopsis thaliana GN=B3GALT2 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 9.4e-06
Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = 1


Query: 5  SKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNR 40
          +K    +SSR+ VSRKWT+ LCL SFC GM FTNR
Sbjct: 3  AKIKGEYSSRSFVSRKWTILLCLGSFCVGMFFTNR 37

[Close]

BLAST of CmoCh20G006250 vs. TrEMBL
Match: A0A0A0LQE6_CUCSA (Hexosyltransferase OS=Cucumis sativus GN=Csa_2G418850 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.7e-07
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 1


Query: 1  MCGKSKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNRFRT 43
          M  KSKA+ HHSSR+++S+KWTLFLCL  FCSGMLFTNR  T
Sbjct: 1  MSWKSKAD-HHSSRSVISQKWTLFLCLVCFCSGMLFTNRMWT 41

[Close]

BLAST of CmoCh20G006250 vs. TAIR10
Match: AT1G05170.2 (AT1G05170.2 Galactosyltransferase family protein)

HSP 1 Score: 50.4 bits (119), Expect = 5.3e-07
Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = 1


Query: 5  SKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNR 40
          +K    +SSR+ VSRKWT+ LCL SFC GM FTNR
Sbjct: 3  AKIKGEYSSRSFVSRKWTILLCLGSFCVGMFFTNR 37

[Close]

BLAST of CmoCh20G006250 vs. NCBI nr
Match: gi|778673477|ref|XP_011650000.1| (PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X2 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 3.8e-07
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 1


Query: 1  MCGKSKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNRFRT 43
          M  KSKA+ HHSSR+++S+KWTLFLCL  FCSGMLFTNR  T
Sbjct: 1  MSWKSKAD-HHSSRSVISQKWTLFLCLVCFCSGMLFTNRMWT 41

[Close]

BLAST of CmoCh20G006250 vs. NCBI nr
Match: gi|778673475|ref|XP_011649999.1| (PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 3.8e-07
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 1


Query: 1  MCGKSKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNRFRT 43
          M  KSKA+ HHSSR+++S+KWTLFLCL  FCSGMLFTNR  T
Sbjct: 1  MSWKSKAD-HHSSRSVISQKWTLFLCLVCFCSGMLFTNRMWT 41

[Close]

BLAST of CmoCh20G006250 vs. NCBI nr
Match: gi|659111738|ref|XP_008455884.1| (PREDICTED: probable beta-1,3-galactosyltransferase 2 [Cucumis melo])

HSP 1 Score: 62.4 bits (150), Expect = 3.8e-07
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 1


Query: 1  MCGKSKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNRFRT 43
          M  KSKA+ HHSSR+++S+KWTLFLCL  FCSGMLFTNR  T
Sbjct: 1  MSWKSKAD-HHSSRSVISQKWTLFLCLVCFCSGMLFTNRMWT 41

The following BLAST results are available for this feature:

BLAST of CmoCh20G006250 vs. Swiss-Prot


Match Name	E-value	Identity	Description
B3GT2_ARATH	9.4e-06	62.86	Probable beta-1,3-galactosyltransferase 2 OS=Arabidopsis thaliana GN=B3GALT2 PE=...	[more]

BLAST of CmoCh20G006250 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQE6_CUCSA	2.7e-07	71.43	Hexosyltransferase OS=Cucumis sativus GN=Csa_2G418850 PE=3 SV=1	[more]

BLAST of CmoCh20G006250 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G05170.2	5.3e-07	62.86	Galactosyltransferase family protein	[more]

BLAST of CmoCh20G006250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778673477\|ref\|XP_011650000.1\|	3.8e-07	71.43	PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X2 [Cucumis sativus...	[more]
gi\|778673475\|ref\|XP_011649999.1\|	3.8e-07	71.43	PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X1 [Cucumis sativus...	[more]
gi\|659111738\|ref\|XP_008455884.1\|	3.8e-07	71.43	PREDICTED: probable beta-1,3-galactosyltransferase 2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025298	DUF4094

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006486	protein glycosylation
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0008378	galactosyltransferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G006250.1	CmoCh20G006250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025298	Domain of unknown function DUF4094	PFAM	PF13334	DUF4094	coord: 18..43 score: 4.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh20G006250	Lsi10G001310	Bottle gourd (USVL1VR-Ls)	cmolsiB493
CmoCh20G006250	Cp4.1LG16g04340	Cucurbita pepo (Zucchini)	cmocpeB517
CmoCh20G006250	MELO3C019270.2	Melon (DHL92) v3.6.1	cmomedB558
CmoCh20G006250	CsaV3_2G034920	Cucumber (Chinese Long) v3	cmocucB0640
CmoCh20G006250	Cla97C02G035250	Watermelon (97103) v2	cmowmbB548
CmoCh20G006250	Bhi10G001111	Wax gourd	cmowgoB0688
CmoCh20G006250	CsGy2G025960	Cucumber (Gy14) v2	cgybcmoB212
CmoCh20G006250	Carg13527	Silver-seed gourd	carcmoB0043

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh20G006250	Cucumber (Chinese Long) v3	cmocucB0672
CmoCh20G006250	Watermelon (97103) v2	cmowmbB552
CmoCh20G006250	Wax gourd	cmowgoB0675
CmoCh20G006250	Cucurbita moschata (Rifu)	cmocmoB117
CmoCh20G006250	Cucurbita moschata (Rifu)	cmocmoB381
CmoCh20G006250	Cucurbita moschata (Rifu)	cmocmoB406
CmoCh20G006250	Cucumber (Gy14) v1	cgycmoB0110
CmoCh20G006250	Cucumber (Gy14) v1	cgycmoB0408
CmoCh20G006250	Cucurbita maxima (Rimu)	cmacmoB552
CmoCh20G006250	Cucurbita maxima (Rimu)	cmacmoB608
CmoCh20G006250	Wild cucumber (PI 183967)	cmocpiB539
CmoCh20G006250	Wild cucumber (PI 183967)	cmocpiB568
CmoCh20G006250	Cucumber (Chinese Long) v2	cmocuB534
CmoCh20G006250	Cucumber (Chinese Long) v2	cmocuB562
CmoCh20G006250	Melon (DHL92) v3.5.1	cmomeB482
CmoCh20G006250	Melon (DHL92) v3.5.1	cmomeB504
CmoCh20G006250	Watermelon (Charleston Gray)	cmowcgB482
CmoCh20G006250	Watermelon (Charleston Gray)	cmowcgB484
CmoCh20G006250	Watermelon (97103) v1	cmowmB526
CmoCh20G006250	Watermelon (97103) v1	cmowmB525
CmoCh20G006250	Cucurbita pepo (Zucchini)	cmocpeB515
CmoCh20G006250	Cucurbita pepo (Zucchini)	cmocpeB525
CmoCh20G006250	Cucurbita pepo (Zucchini)	cmocpeB536
CmoCh20G006250	Bottle gourd (USVL1VR-Ls)	cmolsiB499
CmoCh20G006250	Cucumber (Gy14) v2	cgybcmoB937
CmoCh20G006250	Melon (DHL92) v3.6.1	cmomedB575
CmoCh20G006250	Melon (DHL92) v3.6.1	cmomedB577
CmoCh20G006250	Silver-seed gourd	carcmoB0464
CmoCh20G006250	Silver-seed gourd	carcmoB1184