CmoCh20G005140 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh20G005140
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Nuclear transcription factor Y subunit, putative
Location	Cmo_Chr20 : 2458626 .. 2461596 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCCCCGGGAGCTGGGGAAGTGAAAGTCGCTAAAATCGGCCGAGCGCAGTAAATAGAGTCCCAGATGCAGGCCAGATAGAGCATCAATTCTTCAGTGCGAGCACGCTGTATGTTCTATACCGAGTACTCAGTAAATTATAGACCACTGCAAATCTGCGGGGAAGAAGGCGCAAATCCTTCTTTCATTTGTTGAGTCAAAAGGACATTAAAATCCCCCCTCATCTAAGGACGATGACTTGCCAGTGTGTAGGTTCTTGGTGAAAAAGGACCCGTAGTTCCCCCAAATTCTCAAACACCGATCTTTAACCATGGCTTCGTCCAAAAAATCCAGTAGTGAAGCCAAGAGCAAAGAAGCGGGAACTTCAAAACCAGCCCCCAACAACAAGACCCACAACAACAACGCCAGAACAATCGACAAGGTTTATTCAAAGAAGAAGAAGGTTAGCAACAGCAACAAGCACACTAGCAATGGCTCTGTGAAGGAGAACGAGGTGTTACCCATTTCTGCTCCAGGCGATGCCGAAGAAGACAGAGCAGAAACCACGAGTAAATCGCCTAACACCTCCAAATCGAAGAAAGTTAAACGGAACCGTGGAAAGAAAGAACAGAATGGTTATGTAGAAGAAGAAGAAGAAGCAGAAGAAGAAGCTGAGGAGAAGATTTACAAATTCCCTATGAATCGGATCAAGAAAATCATGAGGGATGAGAATTCTGATTTGCGCATAAATCAGGAAGCTTTGTTTCTCGTCAACAAAGCAACGGTAAGCCCTCAACACCCCGCCCCACCCCACACAGGCATTGCTCAAAATTAGGTCTTTTCTTGTTGGTGGAAGATGGATAGGCATTGTTTGTTTCTAAAGGTCTGTAAGCTTCTTAATTGGTTGCAGGAGATGTTTCTTGTGCAATTTTGCAAGGATGCATATGCGTGCTGTGCTCAGGATCGCAAGAAGTCTCTTGCTTACAAGCATCTATGTAATGTTCCTATTCTCTATCCTGATATCATGCTCAATCTTCATTTTCATTTACCCTTCTTGTCTGGTTCTGATCTAAAAAGAAAGCTAGACCTGTGAATTATATCGTTGTGTACTTCAACTGCACTATCATATGCCCATGGCAGGGCTTTACCTTTAATGAAATGTTTCAATATATGTTCCCCATGATTCAAGGGACCAGATTTAAGAATGGCTGGTCTTGTTTTTTCTGTATTCATGCTGCAAAATGAATAGCAGCATGATGGTCAGCTATTTAGTAGTGACAAGGAAGATATCATGATCACTGTCATAGTTTAACATGGATTATGACCTTAGATTTAGGTTACTCCAATTACATGGTTGTTAAGGGACTTGAATTATATGAGCCTCTATCTGTCAAACTATTGCGTTGTGGAGAATTACTGATTTGTATTATCAGTGCATTGCTTTATGCTTTCAAAGAGCTAGATCCCCAATGAGTTCACATATATGAGGAGGAAGAATAAAAGCCAGTGGAAGGAAAGTTGTTGAATCTGATACTTGGGAAGGGCATAAGTTGGTTGGGGAGGGGTCCGTAATTGTAACAACTCAAGTCCACCACTAGCAGATATTATCCTCTTTGGGTTTTCCCTTTCGGGCTTTCCTTCAAGGTTTTAAAACGCGTCTGTCAGGGAGGTTTACTCACCCTTATAAAGAATGGCTTCGTTCTCCTCCCCAACCGATGTGGGATCTCATGATCCACCCCCCTTCGCGTTCCCTTCTCCATTCGATGTGGGACCCCCCAATCCACCCCCTTTCGAGGCCCAACGTCCTTGCTGGCACATTGCCTTGTGTCCACCTCCTTTGGGGCTCAGCCTTCTCGCTCACACATCGCCCGGTGTCTGGCTCTGATATCATTTGTAACCACCCAAGTCCACCACTAGCACATATTGTCCTCTTTGGGCTTTCTCTTTCAGGCTTCCCTTCAAGGTTTTAAAACGCATCTGCTAAGGAGAGGTTTCCATACCCTTATAAAAAATGGTACGTTCTCCTCTCCAACCGATGTGGGATCTCACGGTAATTGATATCAGCACTCCTTTTGGACAACGGTAAGGTAGGTGGTCAAGGGAACAGAAAGGGAGAATATTGAAGTACATATTTGGTAGACAAAAATGGGGAGGGATTGTGAGTCTAGTATGAAATTTCAATTTGGATGAGGAGAGAACAGGAAGACTCCTGGATCTCTTCCCTTTTGTTTTGTTCTGCTATCTATTCCTAGAAAGTGAATTCAAGTGTCTATCATCTGTCTAGGGGACGAAATTTTGATAAGCCTTTCGTTTTACTTATTGCTTCATATATCTACTATTGCTAATAATTTCACTTGTGAGAATTCTGAAGATACTTCTTTTCTTTATGACCACATTTTGATGTTGGAAAATGTGGGGGTAGAAAGGAAAAAAGGAGGCATTTTCTTCTATCCCGAATAAAGGAAAAGAGGAGGCATTGTGTTATGTGTAAGATTTTTATTGAAGTAGTAGTAAGACTCTCCTTTGTTGTTGCAGCATCAGTAGTTTGCAAAAGGAAGAGATACGACTTTCTTTCAGGTACGTACATACCCATGCCTATTACTTAAGGCTCAACTACTGCTACTATTAGAAAGATTCTTGAACTGTCAAACGCGGTATAAGACGTGTTTTTTTCATCTCCAGATTTTGTCCCAGAGAAATTAAAATTTGAAGATGCATTGAAGGAAAGAAGCATGGCAGAATCAGGAAAAGACTAGGCTTTTTGATATCTTAATCTAACACTTCATCTTGTTCTGTGGATGTGTTGGGTTTAGGTATCTTTTTTTTGTCATGTCAATGGGAATACATGGAAGTTAGAACATTCATTTTCCCTCCGTACAGTTCTGTAAGTTTATTAACGACATCTCAGATCTAACATAATTAAACTATTACTTACACAGGGATCTTTTTTCTTCCTGGGCAAATCCAACAAATCTATTTGCTCAAAAGCAGAAA

mRNA sequence

TGCCCCGGGAGCTGGGGAAGTGAAAGTCGCTAAAATCGGCCGAGCGCAGTAAATAGAGTCCCAGATGCAGGCCAGATAGAGCATCAATTCTTCAGTGCGAGCACGCTGTATGTTCTATACCGAGTACTCAGTAAATTATAGACCACTGCAAATCTGCGGGGAAGAAGGCGCAAATCCTTCTTTCATTTGTTGAGTCAAAAGGACATTAAAATCCCCCCTCATCTAAGGACGATGACTTGCCAGTGTGTAGGTTCTTGGTGAAAAAGGACCCGTAGTTCCCCCAAATTCTCAAACACCGATCTTTAACCATGGCTTCGTCCAAAAAATCCAGTAGTGAAGCCAAGAGCAAAGAAGCGGGAACTTCAAAACCAGCCCCCAACAACAAGACCCACAACAACAACGCCAGAACAATCGACAAGGTTTATTCAAAGAAGAAGAAGGTTAGCAACAGCAACAAGCACACTAGCAATGGCTCTGTGAAGGAGAACGAGGTGTTACCCATTTCTGCTCCAGGCGATGCCGAAGAAGACAGAGCAGAAACCACGAGTAAATCGCCTAACACCTCCAAATCGAAGAAAGTTAAACGGAACCGTGGAAAGAAAGAACAGAATGGTTATGTAGAAGAAGAAGAAGAAGCAGAAGAAGAAGCTGAGGAGAAGATTTACAAATTCCCTATGAATCGGATCAAGAAAATCATGAGGGATGAGAATTCTGATTTGCGCATAAATCAGGAAGCTTTGTTTCTCGTCAACAAAGCAACGGAGATGTTTCTTGTGCAATTTTGCAAGGATGCATATGCGTGCTGTGCTCAGGATCGCAAGAAGTCTCTTGCTTACAAGCATCTATCATCAGTAGTTTGCAAAAGGAAGAGATACGACTTTCTTTCAGATTTTGTCCCAGAGAAATTAAAATTTGAAGATGCATTGAAGGAAAGAAGCATGGCAGAATCAGGAAAAGACTAGGCTTTTTGATATCTTAATCTAACACTTCATCTTGTTCTGTGGATGTGTTGGGTTTAGGTATCTTTTTTTTGTCATGTCAATGGGAATACATGGAAGTTAGAACATTCATTTTCCCTCCGTACAGTTCTGTAAGTTTATTAACGACATCTCAGATCTAACATAATTAAACTATTACTTACACAGGGATCTTTTTTCTTCCTGGGCAAATCCAACAAATCTATTTGCTCAAAAGCAGAAA

Coding sequence (CDS)

ATGGCTTCGTCCAAAAAATCCAGTAGTGAAGCCAAGAGCAAAGAAGCGGGAACTTCAAAACCAGCCCCCAACAACAAGACCCACAACAACAACGCCAGAACAATCGACAAGGTTTATTCAAAGAAGAAGAAGGTTAGCAACAGCAACAAGCACACTAGCAATGGCTCTGTGAAGGAGAACGAGGTGTTACCCATTTCTGCTCCAGGCGATGCCGAAGAAGACAGAGCAGAAACCACGAGTAAATCGCCTAACACCTCCAAATCGAAGAAAGTTAAACGGAACCGTGGAAAGAAAGAACAGAATGGTTATGTAGAAGAAGAAGAAGAAGCAGAAGAAGAAGCTGAGGAGAAGATTTACAAATTCCCTATGAATCGGATCAAGAAAATCATGAGGGATGAGAATTCTGATTTGCGCATAAATCAGGAAGCTTTGTTTCTCGTCAACAAAGCAACGGAGATGTTTCTTGTGCAATTTTGCAAGGATGCATATGCGTGCTGTGCTCAGGATCGCAAGAAGTCTCTTGCTTACAAGCATCTATCATCAGTAGTTTGCAAAAGGAAGAGATACGACTTTCTTTCAGATTTTGTCCCAGAGAAATTAAAATTTGAAGATGCATTGAAGGAAAGAAGCATGGCAGAATCAGGAAAAGACTAG

Homology

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BLAST of CmoCh20G005140 vs. TrEMBL
Match: A0A0A0KCQ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G294440 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 1.4e-75
Identity = 174/228 (76.32%), Postives = 186/228 (81.58%), Query Frame = 1


Query: 1   MASSKKSSSEAKSKEAGTSKPAPNNKTHNNNARTIDKVYSKKKKVSNS---NKHTSNGSV 60
           MASSKKSS+EAKSKE GTSKP+P  KTHNN AR  DK  SKKKK       +  T+NGSV
Sbjct: 1   MASSKKSSTEAKSKEVGTSKPSPKAKTHNN-ARNSDKDISKKKKKKKKISISISTNNGSV 60

Query: 61  KENEVLPISAPGD--------AEEDRAETTSKSPNTSKSKKVKRNRGKKEQNGYVEEEEE 120
           K+N  L +SAPG         A+ED+AETTS+  NTSKSKKVKRN  K+E N Y      
Sbjct: 61  KDNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKKVKRNHAKEEDNRYA----- 120

Query: 121 AEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQD 180
           AEEEAEEKIYKFPM+RIKKIMRDENSDLRINQEALFLVNKA+EMFLVQFCKDAYACCAQD
Sbjct: 121 AEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQD 180

Query: 181 RKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 218
           RKKSLAYKHLSSVV KRKRYDFLSDFVPEKLKFEDALKERSMAESGKD
Sbjct: 181 RKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 222

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BLAST of CmoCh20G005140 vs. TrEMBL
Match: M5W7G1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018528mg PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 6.2e-36
Identity = 103/218 (47.25%), Postives = 143/218 (65.60%), Query Frame = 1


Query: 2   ASSKKSSSEAKSKEAGTSKPAPNNKTHNNNAR--TIDKVYSKKKKVSNSNKHTSNGSVKE 61
           A++ K S E K   +    P  N +T   + +  T  K    KK +S+ N+ TSNG+V +
Sbjct: 7   ATTPKKSKETKKPSSKAITPKKNQETKKPSIKKTTETKKPGTKKTISDKNQ-TSNGNVSD 66

Query: 62  NEVLPISAPGDAEEDRAETTSKSPNTSKSKKVKRNRGKKEQNGYVEEEEEAEEEAEEKIY 121
           ++V  I  P  + E   +T       +K+   K  +  K++    EEEEE EE+ E K Y
Sbjct: 67  SDVEEI--PSSSSESLKDTKQNGGKITKTPTPKSKQSNKKRKQKQEEEEEVEEKEEMKSY 126

Query: 122 KFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKSLAYKHL 181
            FPM R+K+I+R E+S++RI+ +A+FLVNKATE FL +FC+DA+ACC +DRKKSLAYKHL
Sbjct: 127 TFPMERVKRIIRSEDSEMRISHDAVFLVNKATEKFLQKFCEDAHACCVKDRKKSLAYKHL 186

Query: 182 SSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 218
           S+VV KRKRYDFLSD+VPEK+K EDAL +R +AE+  D
Sbjct: 187 STVVSKRKRYDFLSDYVPEKVKAEDALAKRKLAEAKAD 221

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BLAST of CmoCh20G005140 vs. TrEMBL
Match: A0A061GU64_THECC (Nuclear factor Y, putative OS=Theobroma cacao GN=TCM_041051 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.3e-33
Identity = 111/230 (48.26%), Postives = 149/230 (64.78%), Query Frame = 1


Query: 1   MASSKKSSSEA--KSKEAGTSKPAPNNKTH----NNNARTIDKVYSKKKKV-------SN 60
           MASSKK + E   K K+   S PA   KT     +  A T +K    K K        SN
Sbjct: 1   MASSKKPTEEENKKKKKKSNSSPAKETKTALKKPDKKASTTEKANKSKPKPKPKPKPDSN 60

Query: 61  SNKHTSNGSVKENEVL--PISAPGDAEEDRAETTSKSPNTSKSKKVKRNRGKKEQNGYVE 120
            NK +SNG++ E+EV+  P S+    E++    T+K+  ++K K+    + K E+N   E
Sbjct: 61  KNK-SSNGTLVESEVIAVPSSSTDTKEQEDENKTNKNVKSNKRKQ----KEKVEEN---E 120

Query: 121 EEEEAEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYAC 180
            EEE EEE E K+ +FPMNRIK+IM+ E+S + I Q+ +FLVNKATE FL QFC+D Y  
Sbjct: 121 GEEEEEEEEEAKMCRFPMNRIKRIMKSEDSRVAIPQDVVFLVNKATEKFLEQFCEDGYKS 180

Query: 181 CAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESG 216
             +DRKKSL+YKHLS+VV +R+RYDFLSD+VPEK+K EDALKER++ E+G
Sbjct: 181 SVKDRKKSLSYKHLSTVVHERRRYDFLSDYVPEKIKAEDALKERNLTETG 222

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BLAST of CmoCh20G005140 vs. TrEMBL
Match: A0A067G0T9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028727mg PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 8.7e-30
Identity = 95/218 (43.58%), Postives = 135/218 (61.93%), Query Frame = 1


Query: 1   MASSKKSSSE-AKSKEAGTSKPAPNNKTHNNNARTIDKVYSKKKKVSNSNKHTSNGSVKE 60
           MASSKK   E AK K A T K A              K   KK K SN      NG+V E
Sbjct: 1   MASSKKRKEEKAKLKNAETRKKA--------------KPSPKKPKQSNKKTAIQNGTVSE 60

Query: 61  NEVLPISAPGDAEEDRAETTSKSPNTSKSKKVKR-NRGKKEQNGYVEEEEEAEEEAEEKI 120
           ++   +  P  +  + ++  S++    +S++ +  N  KK+ N   ++ E  +++   K+
Sbjct: 61  SKDEVVVTPASSSINDSQQDSETEQEGRSQEQEATNEKKKKPNKNGKKIERDDDDEVSKV 120

Query: 121 YKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKSLAYKH 180
             FPM RIK+I + ++SD+ I  EA+FLVNKAT+ FL QFC+DAY CCA+DRKKSLAYKH
Sbjct: 121 CNFPMGRIKRIFKTQSSDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKH 180

Query: 181 LSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 217
           L++VV ++ +YDFLSD+VPEK+K EDAL +R +AE G+
Sbjct: 181 LAAVVSEQSKYDFLSDYVPEKIKAEDALAQRELAEGGE 204

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BLAST of CmoCh20G005140 vs. TrEMBL
Match: V4SG88_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030232mg PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.9e-29
Identity = 87/199 (43.72%), Postives = 128/199 (64.32%), Query Frame = 1


Query: 18  TSKPAPNNKTHNNNARTIDKVYSKKKKVSNSNKHTS--NGSVKENEVLPISAPGDAEEDR 77
           +SK     K    NA T  K     KK   SNK T+  NG+V E++   +  P  +  + 
Sbjct: 3   SSKKRKEEKAKLENAETRKKAKPSPKKPKKSNKKTAIQNGTVSESKDEVVVTPASSSIND 62

Query: 78  AETTSKSPNTSKSKKVKR-NRGKKEQNGYVEEEEEAEEEAEEKIYKFPMNRIKKIMRDEN 137
           ++  S++    +S++ +  N  KK+ N   ++ E  +++   K+  FPM RIK+I + ++
Sbjct: 63  SQQDSETEQEGRSQEQEATNEKKKKPNKNGKKIERDDDDEVSKVCNFPMGRIKRIFKTQS 122

Query: 138 SDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSD 197
           SD+ I  EA+FLVNKAT+ FL QFC+DAY CCA+DRKKSLAYKHL++VV ++ +YDFLSD
Sbjct: 123 SDIGITGEAVFLVNKATDKFLEQFCEDAYECCAKDRKKSLAYKHLAAVVSEQSKYDFLSD 182

Query: 198 FVPEKLKFEDALKERSMAE 214
           +VPEK+K EDAL +R +AE
Sbjct: 183 YVPEKIKAEDALAQRELAE 201

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BLAST of CmoCh20G005140 vs. TAIR10
Match: AT1G07980.1 (AT1G07980.1 nuclear factor Y, subunit C10)

HSP 1 Score: 98.2 bits (243), Expect = 6.6e-21
Identity = 86/221 (38.91%), Postives = 120/221 (54.30%), Query Frame = 1


Query: 1   MASSKKSSSEAKSKEAGTSKPAPNNKTHNNNARTIDKVYSKKKKVSNSNKHTSNGSVKEN 60
           M SSKK   +    +   +K +  +K  +          S+ KK SN      N   K+ 
Sbjct: 1   MVSSKKPKEKKARSDVVVNKASGRSKRSSG---------SRTKKTSNK----VNIVKKKP 60

Query: 61  EVLPISAPGDAEEDRAETTSKSPNTSKSKKVKRNRGKKEQNGYVEEEEEAEEE----AEE 120
           E+  IS    +  D  E   +     KS  V   RG  +  G   +  +  EE    AE+
Sbjct: 61  EIYEISE--SSSSDSVEEAIRGDEAKKSNGVVSKRGNGKSVGIPTKTSKNREEDDGGAED 120

Query: 121 KIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKSLAY 180
              KFPMNRI++IMR +NS  +I Q+A+FLVNKATEMF+ +F ++AY    +D+KK + Y
Sbjct: 121 AKIKFPMNRIRRIMRSDNSAPQIMQDAVFLVNKATEMFIERFSEEAYDSSVKDKKKFIHY 180

Query: 181 KHLSSVVCKRKRYDFLSDFVPEKLKFEDALK--ERSMAESG 216
           KHLSSVV   +RY+FL+D VPEKLK E AL+  ER M ++G
Sbjct: 181 KHLSSVVSNDQRYEFLADSVPEKLKAEAALEEWERGMTDAG 206

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BLAST of CmoCh20G005140 vs. NCBI nr
Match: gi|659127873|ref|XP_008463933.1| (PREDICTED: DNA polymerase epsilon subunit C [Cucumis melo])

HSP 1 Score: 298.5 bits (763), Expect = 9.4e-78
Identity = 178/226 (78.76%), Postives = 189/226 (83.63%), Query Frame = 1


Query: 1   MASSKKSSSEAKSKEAGTSKPAPNNKTHNNNARTIDKVYSKKKKVSNS-NKHTSNGSVKE 60
           MASSKKSS+EAK KEAGTSKPAP  KTHNN AR  DK  SKKKK     +  T+NGSVK+
Sbjct: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNN-ARNSDKEISKKKKKKKKISISTNNGSVKD 60

Query: 61  NEVLPISAPGD--------AEEDRAETTSKSPNTSKSKKVKRNRGKKEQNGYVEEEEEAE 120
           NEVL +S PG         A+ED+AETTS+   TSKSKKVKRN  K+E NGY EEEE   
Sbjct: 61  NEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEE--- 120

Query: 121 EEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRK 180
           EEAEEKIYKFPM+RIKKIMRDENSDLRINQEALFLVNKA+EMFLVQFCKDAYACCAQDRK
Sbjct: 121 EEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRK 180

Query: 181 KSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 218
           KSLAYKHLSSVV KRKRYDFLSDFVPEKLKFEDALKERSMAESGKD
Sbjct: 181 KSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 222

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BLAST of CmoCh20G005140 vs. NCBI nr
Match: gi|778714369|ref|XP_004149539.2| (PREDICTED: chromatin accessibility complex protein 1 [Cucumis sativus])

HSP 1 Score: 290.8 bits (743), Expect = 2.0e-75
Identity = 174/228 (76.32%), Postives = 186/228 (81.58%), Query Frame = 1


Query: 1   MASSKKSSSEAKSKEAGTSKPAPNNKTHNNNARTIDKVYSKKKKVSNS---NKHTSNGSV 60
           MASSKKSS+EAKSKE GTSKP+P  KTHNN AR  DK  SKKKK       +  T+NGSV
Sbjct: 1   MASSKKSSTEAKSKEVGTSKPSPKAKTHNN-ARNSDKDISKKKKKKKKISISISTNNGSV 60

Query: 61  KENEVLPISAPGD--------AEEDRAETTSKSPNTSKSKKVKRNRGKKEQNGYVEEEEE 120
           K+N  L +SAPG         A+ED+AETTS+  NTSKSKKVKRN  K+E N Y      
Sbjct: 61  KDNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKKVKRNHAKEEDNRYA----- 120

Query: 121 AEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQD 180
           AEEEAEEKIYKFPM+RIKKIMRDENSDLRINQEALFLVNKA+EMFLVQFCKDAYACCAQD
Sbjct: 121 AEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQD 180

Query: 181 RKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 218
           RKKSLAYKHLSSVV KRKRYDFLSDFVPEKLKFEDALKERSMAESGKD
Sbjct: 181 RKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 222

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BLAST of CmoCh20G005140 vs. NCBI nr
Match: gi|645217356|ref|XP_008225482.1| (PREDICTED: transcriptional regulator ATRX homolog [Prunus mume])

HSP 1 Score: 160.6 bits (405), Expect = 3.1e-36
Identity = 106/223 (47.53%), Postives = 143/223 (64.13%), Query Frame = 1


Query: 1   MASSKKSSSEAKSKEAG--TSKPAPNNKTHNNNARTIDKVYSKKK----KVSNSNKHTSN 60
           MA+ +K+++  KSKE    +SK     KT      +I K    KK    K  +    TSN
Sbjct: 1   MATPRKATTPKKSKETKKPSSKAITPKKTQETKNPSIKKTPETKKPGTKKTISDKNQTSN 60

Query: 61  GSVKENEVLPISAPGDAEEDRAETTSKSPNTSKSKKVKRNRGKKEQNGYVEEEEEAEEEA 120
           G+V +++V  I  P  + E   +T       +K+   K     K++    EEEEE EE+ 
Sbjct: 61  GNVSDSDVEEI--PSSSSESLKDTKQDGGKITKTPTPKSKHSNKKRKQKQEEEEEVEEKE 120

Query: 121 EEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKSL 180
           E K Y FPM R+K+I+R E+S++RI+ +A+FLVNKATE FL +FC+DA+ACC +DRKKSL
Sbjct: 121 EVKSYTFPMERVKRIIRSEDSEMRISHDAVFLVNKATEKFLQKFCEDAHACCVKDRKKSL 180

Query: 181 AYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 218
           AYKHLSSVV KRKRYDFLSD+VPEK+K EDAL +R +AE+  D
Sbjct: 181 AYKHLSSVVSKRKRYDFLSDYVPEKVKAEDALAKRKLAEAKAD 221

[Close]

BLAST of CmoCh20G005140 vs. NCBI nr
Match: gi|595842750|ref|XP_007208483.1| (hypothetical protein PRUPE_ppa018528mg [Prunus persica])

HSP 1 Score: 159.1 bits (401), Expect = 8.9e-36
Identity = 103/218 (47.25%), Postives = 143/218 (65.60%), Query Frame = 1


Query: 2   ASSKKSSSEAKSKEAGTSKPAPNNKTHNNNAR--TIDKVYSKKKKVSNSNKHTSNGSVKE 61
           A++ K S E K   +    P  N +T   + +  T  K    KK +S+ N+ TSNG+V +
Sbjct: 7   ATTPKKSKETKKPSSKAITPKKNQETKKPSIKKTTETKKPGTKKTISDKNQ-TSNGNVSD 66

Query: 62  NEVLPISAPGDAEEDRAETTSKSPNTSKSKKVKRNRGKKEQNGYVEEEEEAEEEAEEKIY 121
           ++V  I  P  + E   +T       +K+   K  +  K++    EEEEE EE+ E K Y
Sbjct: 67  SDVEEI--PSSSSESLKDTKQNGGKITKTPTPKSKQSNKKRKQKQEEEEEVEEKEEMKSY 126

Query: 122 KFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKSLAYKHL 181
            FPM R+K+I+R E+S++RI+ +A+FLVNKATE FL +FC+DA+ACC +DRKKSLAYKHL
Sbjct: 127 TFPMERVKRIIRSEDSEMRISHDAVFLVNKATEKFLQKFCEDAHACCVKDRKKSLAYKHL 186

Query: 182 SSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 218
           S+VV KRKRYDFLSD+VPEK+K EDAL +R +AE+  D
Sbjct: 187 STVVSKRKRYDFLSDYVPEKVKAEDALAKRKLAEAKAD 221

[Close]

BLAST of CmoCh20G005140 vs. NCBI nr
Match: gi|1009146027|ref|XP_015890660.1| (PREDICTED: DNA polymerase epsilon subunit 4 [Ziziphus jujuba])

HSP 1 Score: 157.9 bits (398), Expect = 2.0e-35
Identity = 95/203 (46.80%), Postives = 130/203 (64.04%), Query Frame = 1


Query: 16  AGTSKPAPNNKTHNNNARTIDKVYSKKKKVSNSNKHTSNGSVKENEVLPISAPGDAE--- 75
           A + KP    K +    +  +    KK +   ++  T NG+V  ++++P+ +        
Sbjct: 2   ASSKKPVQEKKGNETKKKVTEGNSGKKGRNETNSSKTCNGTVSNSKIVPLQSSSSESQHK 61

Query: 76  -EDRAETTSKSPNTSKSKKVKRNRGKKEQNGYVEEEEEAEEEAEEKIYKFPMNRIKKIMR 135
            ED  E T    ++SKS+K     GK +Q    E EEE  E+ + K+ KFPM+RIK+I+R
Sbjct: 62  VEDGPEITKTPTSSSKSRK-----GKGQQKVKREREEEVAEKEDAKMNKFPMDRIKRIIR 121

Query: 136 DENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVCKRKRYDF 195
            E+S+LRI+ EA+FLVNKATE FL +FC D+Y CC QDRKKSL YKHLSS+VCKR++YDF
Sbjct: 122 SEDSNLRISSEAIFLVNKATEKFLEKFCADSYVCCVQDRKKSLGYKHLSSIVCKRRKYDF 181

Query: 196 LSDFVPEKLKFEDALKERSMAES 215
           LSDFVPEKLK EDAL    + +S
Sbjct: 182 LSDFVPEKLKAEDALAVAKLTKS 199

The following BLAST results are available for this feature:

BLAST of CmoCh20G005140 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh20G005140 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCQ2_CUCSA	1.4e-75	76.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G294440 PE=4 SV=1	[more]
M5W7G1_PRUPE	6.2e-36	47.25	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018528mg PE=4 SV=1	[more]
A0A061GU64_THECC	1.3e-33	48.26	Nuclear factor Y, putative OS=Theobroma cacao GN=TCM_041051 PE=4 SV=1	[more]
A0A067G0T9_CITSI	8.7e-30	43.58	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028727mg PE=4 SV=1	[more]
V4SG88_9ROSI	1.9e-29	43.72	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030232mg PE=4 SV=1	[more]

BLAST of CmoCh20G005140 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07980.1	6.6e-21	38.91	nuclear factor Y, subunit C10	[more]

BLAST of CmoCh20G005140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659127873\|ref\|XP_008463933.1\|	9.4e-78	78.76	PREDICTED: DNA polymerase epsilon subunit C [Cucumis melo]	[more]
gi\|778714369\|ref\|XP_004149539.2\|	2.0e-75	76.32	PREDICTED: chromatin accessibility complex protein 1 [Cucumis sativus]	[more]
gi\|645217356\|ref\|XP_008225482.1\|	3.1e-36	47.53	PREDICTED: transcriptional regulator ATRX homolog [Prunus mume]	[more]
gi\|595842750\|ref\|XP_007208483.1\|	8.9e-36	47.25	hypothetical protein PRUPE_ppa018528mg [Prunus persica]	[more]
gi\|1009146027\|ref\|XP_015890660.1\|	2.0e-35	46.80	PREDICTED: DNA polymerase epsilon subunit 4 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003958	CBFA_NFYB_domain
IPR009072	Histone-fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0043687	post-translational protein modification
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G005140.1	CmoCh20G005140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 120..183 score: 3.3
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 121..198 score: 2.4
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 120..197 score: 1.95
None	No IPR available	unknown	Coil	Coil	coord: 97..117 scor
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 51..209 score: 1.3
None	No IPR available	PANTHER	PTHR10252:SF44	DNA POLYMERASE EPSILON SUBUNIT C-RELATED	coord: 51..209 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh20G005140	CmaCh20G004790	Cucurbita maxima (Rimu)	cmacmoB550
CmoCh20G005140	CmaCh02G008860	Cucurbita maxima (Rimu)	cmacmoB605
CmoCh20G005140	Cla008749	Watermelon (97103) v1	cmowmB513
CmoCh20G005140	Csa6G294440	Cucumber (Chinese Long) v2	cmocuB547
CmoCh20G005140	MELO3C025765	Melon (DHL92) v3.5.1	cmomeB481
CmoCh20G005140	ClCG02G021080	Watermelon (Charleston Gray)	cmowcgB479
CmoCh20G005140	CSPI06G16390	Wild cucumber (PI 183967)	cmocpiB552
CmoCh20G005140	Lsi10G012770	Bottle gourd (USVL1VR-Ls)	cmolsiB490
CmoCh20G005140	Cp4.1LG05g08180	Cucurbita pepo (Zucchini)	cmocpeB537
CmoCh20G005140	MELO3C025765.2	Melon (DHL92) v3.6.1	cmomedB556
CmoCh20G005140	CsaV3_6G021790	Cucumber (Chinese Long) v3	cmocucB0654
CmoCh20G005140	Cla97C02G047110	Watermelon (97103) v2	cmowmbB545
CmoCh20G005140	Bhi10G000456	Wax gourd	cmowgoB0686
CmoCh20G005140	CsGy6G015910	Cucumber (Gy14) v2	cgybcmoB772
CmoCh20G005140	Carg22596	Silver-seed gourd	carcmoB0307

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh20G005140	CmoCh02G008860	Cucurbita moschata (Rifu)	cmocmoB403

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh20G005140	Melon (DHL92) v3.5.1	cmomeB508
CmoCh20G005140	Watermelon (Charleston Gray)	cmowcgB474
CmoCh20G005140	Watermelon (Charleston Gray)	cmowcgB502
CmoCh20G005140	Watermelon (97103) v1	cmowmB505
CmoCh20G005140	Cucurbita pepo (Zucchini)	cmocpeB517
CmoCh20G005140	Bottle gourd (USVL1VR-Ls)	cmolsiB503
CmoCh20G005140	Bottle gourd (USVL1VR-Ls)	cmolsiB509
CmoCh20G005140	Cucumber (Gy14) v2	cgybcmoB360
CmoCh20G005140	Cucumber (Gy14) v2	cgybcmoB769
CmoCh20G005140	Melon (DHL92) v3.6.1	cmomedB584
CmoCh20G005140	Silver-seed gourd	carcmoB0464
CmoCh20G005140	Cucumber (Chinese Long) v3	cmocucB0634
CmoCh20G005140	Cucumber (Chinese Long) v3	cmocucB0643
CmoCh20G005140	Watermelon (97103) v2	cmowmbB543
CmoCh20G005140	Watermelon (97103) v2	cmowmbB567
CmoCh20G005140	Watermelon (97103) v2	cmowmbB569
CmoCh20G005140	Wax gourd	cmowgoB0672
CmoCh20G005140	Cucurbita moschata (Rifu)	cmocmoB178
CmoCh20G005140	Cucurbita moschata (Rifu)	cmocmoB422
CmoCh20G005140	Cucumber (Gy14) v1	cgycmoB0839
CmoCh20G005140	Cucurbita maxima (Rimu)	cmacmoB231
CmoCh20G005140	Cucurbita maxima (Rimu)	cmacmoB474
CmoCh20G005140	Cucurbita maxima (Rimu)	cmacmoB818
CmoCh20G005140	Wild cucumber (PI 183967)	cmocpiB541
CmoCh20G005140	Cucumber (Chinese Long) v2	cmocuB536