CmoCh20G002870 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh20G002870
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Chlorophyll a-b binding protein 21, chloroplastic
Location	Cmo_Chr20 : 1389168 .. 1389971 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTTCATCCATGGCCCTCTCCTCCCCATCTCTCGCCGGCCAAGCCGTCAAATTGTCCCCCTCCGCCTCCGACATCCTCGGCGAATCCCGCGTCACCATGAGGAAAACCGGTGGCAGACCCAAGCCCGTCTCCTCTGGAAGCCCATGGTACGGTCCAGACCGAGTCAAGTACTTGGGTCCATTCTCCGGTGAGCCGCCGTCCTATCTGACCGGGGAATTTCCCGGCGACTACGGCTGGGACACTGCTGGGCTGTCCGCCGACCCCGAGACGTTCGCCAAAAACAGGGAGCTGGAAGTGATCCACTCGAGATGGGCCATGCTTGGGGCTCTGGGGTGCGTCTTCCCCGAGCTCCTGTCTCGCAACGGAGTCAAATTTGGCGAGGCTGTGTGGTTCAAAGCTGGGTCTCAGATCTTCAGCGAAGGTGGGCTCGACTATTTGGGGAACCCGAGCCTGGTCCACGCTCAGAGCATTTTGGCCATTTGGGCGTGTCAGGTTGTGCTGATGGGTGCGGTTGAGGGCTACAGAATTGCTGGTGGGCCTCTGGGTGAGATCACCGACCCAATTTACCCAGGTGGGAGCTTTGACCCACTGGGGCTGGCCGATGACCCTGAGGCCTTTGCAGAGCTTAAAGTGAAGGAGCTCAAAAATGGGCGATTGGCCATGTTTTCCATGTTCGGTTTCTTCGTGCAGGCCATTGTCACTGGCAAAGGACCTTTGGAGAACTTGGCCGACCATTTGGCTGACCCTGTTAACAACAATGCCTGGTCTTACGCCACTAACTTTGTACCTGGAAAGTGA

mRNA sequence

ATGGCAGCTTCATCCATGGCCCTCTCCTCCCCATCTCTCGCCGGCCAAGCCGTCAAATTGTCCCCCTCCGCCTCCGACATCCTCGGCGAATCCCGCGTCACCATGAGGAAAACCGGTGGCAGACCCAAGCCCGTCTCCTCTGGAAGCCCATGGTACGGTCCAGACCGAGTCAAGTACTTGGGTCCATTCTCCGGTGAGCCGCCGTCCTATCTGACCGGGGAATTTCCCGGCGACTACGGCTGGGACACTGCTGGGCTGTCCGCCGACCCCGAGACGTTCGCCAAAAACAGGGAGCTGGAAGTGATCCACTCGAGATGGGCCATGCTTGGGGCTCTGGGGTGCGTCTTCCCCGAGCTCCTGTCTCGCAACGGAGTCAAATTTGGCGAGGCTGTGTGGTTCAAAGCTGGGTCTCAGATCTTCAGCGAAGGTGGGCTCGACTATTTGGGGAACCCGAGCCTGGTCCACGCTCAGAGCATTTTGGCCATTTGGGCGTGTCAGGTTGTGCTGATGGGTGCGGTTGAGGGCTACAGAATTGCTGGTGGGCCTCTGGGTGAGATCACCGACCCAATTTACCCAGGTGGGAGCTTTGACCCACTGGGGCTGGCCGATGACCCTGAGGCCTTTGCAGAGCTTAAAGTGAAGGAGCTCAAAAATGGGCGATTGGCCATGTTTTCCATGTTCGGTTTCTTCGTGCAGGCCATTGTCACTGGCAAAGGACCTTTGGAGAACTTGGCCGACCATTTGGCTGACCCTGTTAACAACAATGCCTGGTCTTACGCCACTAACTTTGTACCTGGAAAGTGA

Coding sequence (CDS)

ATGGCAGCTTCATCCATGGCCCTCTCCTCCCCATCTCTCGCCGGCCAAGCCGTCAAATTGTCCCCCTCCGCCTCCGACATCCTCGGCGAATCCCGCGTCACCATGAGGAAAACCGGTGGCAGACCCAAGCCCGTCTCCTCTGGAAGCCCATGGTACGGTCCAGACCGAGTCAAGTACTTGGGTCCATTCTCCGGTGAGCCGCCGTCCTATCTGACCGGGGAATTTCCCGGCGACTACGGCTGGGACACTGCTGGGCTGTCCGCCGACCCCGAGACGTTCGCCAAAAACAGGGAGCTGGAAGTGATCCACTCGAGATGGGCCATGCTTGGGGCTCTGGGGTGCGTCTTCCCCGAGCTCCTGTCTCGCAACGGAGTCAAATTTGGCGAGGCTGTGTGGTTCAAAGCTGGGTCTCAGATCTTCAGCGAAGGTGGGCTCGACTATTTGGGGAACCCGAGCCTGGTCCACGCTCAGAGCATTTTGGCCATTTGGGCGTGTCAGGTTGTGCTGATGGGTGCGGTTGAGGGCTACAGAATTGCTGGTGGGCCTCTGGGTGAGATCACCGACCCAATTTACCCAGGTGGGAGCTTTGACCCACTGGGGCTGGCCGATGACCCTGAGGCCTTTGCAGAGCTTAAAGTGAAGGAGCTCAAAAATGGGCGATTGGCCATGTTTTCCATGTTCGGTTTCTTCGTGCAGGCCATTGTCACTGGCAAAGGACCTTTGGAGAACTTGGCCGACCATTTGGCTGACCCTGTTAACAACAATGCCTGGTCTTACGCCACTAACTTTGTACCTGGAAAGTGA

Homology

[Close]

BLAST of CmoCh20G002870 vs. Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 513.5 bits (1321), Expect = 1.4e-144
Identity = 243/267 (91.01%), Postives = 258/267 (96.63%), Query Frame = 1


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MA+S+MALSSPSLAG+AVKL P+AS+I+GE R+TMRKT G+PK V S SPWYGPDRVKYL
Sbjct: 1   MASSTMALSSPSLAGKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           +RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV+LMGAVEGYRIAG
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE+ DP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 268
           LENLADHLADPVNNNAW++ATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWNFATNFVPGK 267

[Close]

BLAST of CmoCh20G002870 vs. Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 509.2 bits (1310), Expect = 2.7e-143
Identity = 243/267 (91.01%), Postives = 256/267 (95.88%), Query Frame = 1


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MAAS+MALSSPS AG+AVKLSPS+S+I G  +VTMRKT  + K VSSGSPWYGPDRVKYL
Sbjct: 1   MAASTMALSSPSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           +RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR+AG
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE+ DP+YPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 268
           LENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of CmoCh20G002870 vs. Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 505.8 bits (1301), Expect = 3.0e-142
Identity = 242/267 (90.64%), Postives = 254/267 (95.13%), Query Frame = 1


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MA S+MALSS + AG+AVKLSPS+S+I G  RVTMRKT  + KP SSGSPWYGPDRVKYL
Sbjct: 1   MATSTMALSSSTFAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           +RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE+ DP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 268
           LENLADHLADPVNNNAW++ATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of CmoCh20G002870 vs. Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 505.8 bits (1301), Expect = 3.0e-142
Identity = 242/267 (90.64%), Postives = 254/267 (95.13%), Query Frame = 1


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MAA++MALSSPS AG+AVK SPS+S+I G  + TMRKT  + KPVSSGSPWYGPDRVKYL
Sbjct: 1   MAAATMALSSPSFAGKAVKFSPSSSEITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGE PSYLTGEFPGDYGWDTA LSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 61  GPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           +RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR+AG
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE+ DP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 268
           LENLADHLADPVNNNAWSYATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWSYATNFVPGK 267

[Close]

BLAST of CmoCh20G002870 vs. Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 505.0 bits (1299), Expect = 5.1e-142
Identity = 242/267 (90.64%), Postives = 255/267 (95.51%), Query Frame = 1


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MAAS+ ALSSP  AG+AVKLSPS+S++ G  +VTMRKT  + KPVSSGSPWYGPDRVKYL
Sbjct: 1   MAASTTALSSP-FAGKAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           +RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR+AG
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE+ DP+YPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 268
           LENLADHLADPVNNNAWSYATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWSYATNFVPGK 266

[Close]

BLAST of CmoCh20G002870 vs. TrEMBL
Match: A0A0A0KGD7_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_6G139750 PE=3 SV=1)

HSP 1 Score: 537.7 bits (1384), Expect = 7.9e-150
Identity = 259/267 (97.00%), Postives = 264/267 (98.88%), Query Frame = 1


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MAASSMALSSPS AGQAVKLSP+ASD+LGE R+TMRKT G+PKPVSSGSPWYGPDRVKYL
Sbjct: 1   MAASSMALSSPSFAGQAVKLSPTASDLLGEGRITMRKTAGKPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG
Sbjct: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 268
           LENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of CmoCh20G002870 vs. TrEMBL
Match: Q1KLZ3_9ROSI (Chlorophyll a-b binding protein, chloroplastic OS=Carya cathayensis GN=ABC PE=2 SV=1)

HSP 1 Score: 531.2 bits (1367), Expect = 7.4e-148
Identity = 254/267 (95.13%), Postives = 264/267 (98.88%), Query Frame = 1


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MAAS+MALSSPSLAGQA+KL+PS+SD+LGE RVTMRKT GRPKPVSSGSPWYGPDRVKYL
Sbjct: 1   MAASTMALSSPSLAGQAIKLAPSSSDLLGEGRVTMRKTAGRPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           +RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLVHAQSILAIWA QV+LMGAVEGYRIAG
Sbjct: 121 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE+TDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 268
           LENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of CmoCh20G002870 vs. TrEMBL
Match: A0A089WZX0_KALFE (Chlorophyll a-b binding protein, chloroplastic OS=Kalanchoe fedtschenkoi PE=2 SV=1)

HSP 1 Score: 524.2 bits (1349), Expect = 9.0e-146
Identity = 249/267 (93.26%), Postives = 262/267 (98.13%), Query Frame = 1


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MAAS+MALSSPSLAGQA+KL+PSASDILGE R++MRKTG +PKPVSSGSPWYGPDRVKYL
Sbjct: 1   MAASTMALSSPSLAGQAIKLAPSASDILGEGRISMRKTGAKPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           SRNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLVHAQSILAIWA QV+LMGAVEGYR+AG
Sbjct: 121 SRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE+ DP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 268
           LENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of CmoCh20G002870 vs. TrEMBL
Match: A5C4U9_VITVI (Chlorophyll a-b binding protein, chloroplastic OS=Vitis vinifera GN=VIT_19s0014g00160 PE=3 SV=1)

HSP 1 Score: 518.1 bits (1333), Expect = 6.5e-144
Identity = 247/267 (92.51%), Postives = 260/267 (97.38%), Query Frame = 1


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MAAS+MALSSPSLAG+A+KL+PSASD+LGE RVTMRKTGGR KPVSSGSPWYG DRVKYL
Sbjct: 1   MAASTMALSSPSLAGKALKLAPSASDLLGEGRVTMRKTGGRAKPVSSGSPWYGTDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           +RNGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LVHAQSILAIWA QV+LMGAVEGYRI G
Sbjct: 121 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVILMGAVEGYRIGG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE+ DP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 268
           LENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of CmoCh20G002870 vs. TrEMBL
Match: A4F3R3_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea GN=lhcb1.2 PE=3 SV=1)

HSP 1 Score: 517.7 bits (1332), Expect = 8.4e-144
Identity = 246/267 (92.13%), Postives = 260/267 (97.38%), Query Frame = 1


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MA+S+MALSSPSLAG+A+KL P+AS+ILGE RVTMRKT G+PK VSSGSPWYGPDRVKYL
Sbjct: 1   MASSTMALSSPSLAGKAIKLGPTASEILGEGRVTMRKTAGKPKNVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPELL
Sbjct: 61  GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           +RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV+LMGAVEGYRIAG
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE+ DP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 268
           LENLADHLADPVNNNAWS+ATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWSFATNFVPGK 267

[Close]

BLAST of CmoCh20G002870 vs. TAIR10
Match: AT1G29930.1 (AT1G29930.1 chlorophyll A/B binding protein 1)

HSP 1 Score: 483.0 bits (1242), Expect = 1.2e-136
Identity = 236/268 (88.06%), Postives = 252/268 (94.03%), Query Frame = 1


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MAAS+MALSSP+ AG+AVKLSP+AS++LG  RVTMRKT  +PK   SGSPWYG DRVKYL
Sbjct: 1   MAASTMALSSPAFAGKAVKLSPAASEVLGSGRVTMRKTVAKPKG-PSGSPWYGSDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           +RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSLVHAQSILAIWA QV+LMGAVEGYR+AG
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG 180

Query: 181 -GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240
            GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 181 NGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240

Query: 241 PLENLADHLADPVNNNAWSYATNFVPGK 268
           P+ENLADHLADPVNNNAW++ATNFVPGK
Sbjct: 241 PIENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of CmoCh20G002870 vs. TAIR10
Match: AT1G29920.1 (AT1G29920.1 chlorophyll A/B-binding protein 2)

HSP 1 Score: 481.1 bits (1237), Expect = 4.4e-136
Identity = 235/268 (87.69%), Postives = 251/268 (93.66%), Query Frame = 1


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MAAS+MALSSP+ AG+AV LSP+AS++LG  RVTMRKT  +PK   SGSPWYG DRVKYL
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKG-PSGSPWYGSDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           +RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSLVHAQSILAIWA QV+LMGAVEGYR+AG
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG 180

Query: 181 -GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240
            GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 181 NGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240

Query: 241 PLENLADHLADPVNNNAWSYATNFVPGK 268
           P+ENLADHLADPVNNNAW++ATNFVPGK
Sbjct: 241 PIENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of CmoCh20G002870 vs. TAIR10
Match: AT1G29910.1 (AT1G29910.1 chlorophyll A/B binding protein 3)

HSP 1 Score: 481.1 bits (1237), Expect = 4.4e-136
Identity = 235/268 (87.69%), Postives = 251/268 (93.66%), Query Frame = 1


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MAAS+MALSSP+ AG+AV LSP+AS++LG  RVTMRKT  +PK   SGSPWYG DRVKYL
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKG-PSGSPWYGSDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           +RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSLVHAQSILAIWA QV+LMGAVEGYR+AG
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG 180

Query: 181 -GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240
            GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 181 NGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240

Query: 241 PLENLADHLADPVNNNAWSYATNFVPGK 268
           P+ENLADHLADPVNNNAW++ATNFVPGK
Sbjct: 241 PIENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of CmoCh20G002870 vs. TAIR10
Match: AT2G34420.1 (AT2G34420.1 photosystem II light harvesting complex gene B1B2)

HSP 1 Score: 479.6 bits (1233), Expect = 1.3e-135
Identity = 236/268 (88.06%), Postives = 251/268 (93.66%), Query Frame = 1


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MA+S+MALSSP+ AG+AVK  P+ASD+LG  RVTMRKT  +PK   SGSPWYG DRVKYL
Sbjct: 1   MASSTMALSSPAFAGKAVK--PAASDVLGSGRVTMRKTVAKPKG-PSGSPWYGSDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           +RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSLVHAQSILAIWA QV+LMGAVEGYR+AG
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG 180

Query: 181 -GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240
            GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 181 DGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240

Query: 241 PLENLADHLADPVNNNAWSYATNFVPGK 268
           PLENLADHLADPVNNNAW++ATNFVPGK
Sbjct: 241 PLENLADHLADPVNNNAWAFATNFVPGK 265

[Close]

BLAST of CmoCh20G002870 vs. TAIR10
Match: AT2G34430.1 (AT2G34430.1 light-harvesting chlorophyll-protein complex II subunit B1)

HSP 1 Score: 479.2 bits (1232), Expect = 1.7e-135
Identity = 234/268 (87.31%), Postives = 249/268 (92.91%), Query Frame = 1


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MAAS+MALSSP+L G+AVKLSP+AS++ G  R+TMRK      P  SGSPWYG DRVKYL
Sbjct: 1   MAASTMALSSPALTGKAVKLSPAASEVFGTGRITMRKASKPTGP--SGSPWYGSDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           +RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSLVHAQSILAIWA QV+LMGAVEGYR+AG
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG 180

Query: 181 -GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240
            GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 181 DGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240

Query: 241 PLENLADHLADPVNNNAWSYATNFVPGK 268
           PLENLADHLADPVNNNAW++ATNFVPGK
Sbjct: 241 PLENLADHLADPVNNNAWAFATNFVPGK 266

[Close]

BLAST of CmoCh20G002870 vs. NCBI nr
Match: gi|659112876|ref|XP_008456347.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1 [Cucumis melo])

HSP 1 Score: 539.3 bits (1388), Expect = 3.9e-150
Identity = 260/267 (97.38%), Postives = 265/267 (99.25%), Query Frame = 1


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MAASSMALSSPSLAGQAVKLSP+ASD+LGE R+TMRKT G+PKPVSSGSPWYGPDRVKYL
Sbjct: 1   MAASSMALSSPSLAGQAVKLSPTASDLLGEGRITMRKTAGKPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG
Sbjct: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 268
           LENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of CmoCh20G002870 vs. NCBI nr
Match: gi|449455992|ref|XP_004145734.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Cucumis sativus])

HSP 1 Score: 537.7 bits (1384), Expect = 1.1e-149
Identity = 259/267 (97.00%), Postives = 264/267 (98.88%), Query Frame = 1


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MAASSMALSSPS AGQAVKLSP+ASD+LGE R+TMRKT G+PKPVSSGSPWYGPDRVKYL
Sbjct: 1   MAASSMALSSPSFAGQAVKLSPTASDLLGEGRITMRKTAGKPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG
Sbjct: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 268
           LENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of CmoCh20G002870 vs. NCBI nr
Match: gi|94404555|gb|ABF17940.1| (putative chloroplast chlorophyll a/b-binding protein [Carya cathayensis])

HSP 1 Score: 531.2 bits (1367), Expect = 1.1e-147
Identity = 254/267 (95.13%), Postives = 264/267 (98.88%), Query Frame = 1


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MAAS+MALSSPSLAGQA+KL+PS+SD+LGE RVTMRKT GRPKPVSSGSPWYGPDRVKYL
Sbjct: 1   MAASTMALSSPSLAGQAIKLAPSSSDLLGEGRVTMRKTAGRPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           +RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLVHAQSILAIWA QV+LMGAVEGYRIAG
Sbjct: 121 ARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE+TDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 268
           LENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of CmoCh20G002870 vs. NCBI nr
Match: gi|692110637|gb|AIR93785.1| (chloroplast light harvesting chlorophyll A/B binding protein [Kalanchoe fedtschenkoi])

HSP 1 Score: 524.2 bits (1349), Expect = 1.3e-145
Identity = 249/267 (93.26%), Postives = 262/267 (98.13%), Query Frame = 1


Query: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60
           MAAS+MALSSPSLAGQA+KL+PSASDILGE R++MRKTG +PKPVSSGSPWYGPDRVKYL
Sbjct: 1   MAASTMALSSPSLAGQAIKLAPSASDILGEGRISMRKTGAKPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           SRNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLVHAQSILAIWA QV+LMGAVEGYR+AG
Sbjct: 121 SRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE+ DP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 268
           LENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of CmoCh20G002870 vs. NCBI nr
Match: gi|695019019|ref|XP_009396492.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 523.5 bits (1347), Expect = 2.2e-145
Identity = 247/265 (93.21%), Postives = 260/265 (98.11%), Query Frame = 1


Query: 3   ASSMALSSPSLAGQAVKLSPSASDILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYLGP 62
           AS+MALSSPS AGQAVKL+PSASD+LG  RVTMRKTG +PKPV+SGSPWYGPDRVKYLGP
Sbjct: 2   ASTMALSSPSFAGQAVKLAPSASDVLGGGRVTMRKTGAKPKPVASGSPWYGPDRVKYLGP 61

Query: 63  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 122
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+R
Sbjct: 62  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 121

Query: 123 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 182
           NGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYRIAGGP
Sbjct: 122 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 181

Query: 183 LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 242
           LGE+TDP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 182 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 241

Query: 243 NLADHLADPVNNNAWSYATNFVPGK 268
           NLADHLADPVNNNAW+YATNFVPGK
Sbjct: 242 NLADHLADPVNNNAWAYATNFVPGK 266

The following BLAST results are available for this feature:

BLAST of CmoCh20G002870 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CB2A_SPIOL	1.4e-144	91.01	Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1	[more]
CB24_TOBAC	2.7e-143	91.01	Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 ...	[more]
CB2G_SOLLC	3.0e-142	90.64	Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB...	[more]
CB25_PETSP	3.0e-142	90.64	Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3...	[more]
CB21_TOBAC	5.1e-142	90.64	Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 ...	[more]

BLAST of CmoCh20G002870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGD7_CUCSA	7.9e-150	97.00	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_6G13975...	[more]
Q1KLZ3_9ROSI	7.4e-148	95.13	Chlorophyll a-b binding protein, chloroplastic OS=Carya cathayensis GN=ABC PE=2 ...	[more]
A0A089WZX0_KALFE	9.0e-146	93.26	Chlorophyll a-b binding protein, chloroplastic OS=Kalanchoe fedtschenkoi PE=2 SV...	[more]
A5C4U9_VITVI	6.5e-144	92.51	Chlorophyll a-b binding protein, chloroplastic OS=Vitis vinifera GN=VIT_19s0014g...	[more]
A4F3R3_SPIOL	8.4e-144	92.13	Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea GN=lhcb1.2 P...	[more]

BLAST of CmoCh20G002870 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G29930.1	1.2e-136	88.06	chlorophyll A/B binding protein 1	[more]
AT1G29920.1	4.4e-136	87.69	chlorophyll A/B-binding protein 2	[more]
AT1G29910.1	4.4e-136	87.69	chlorophyll A/B binding protein 3	[more]
AT2G34420.1	1.3e-135	88.06	photosystem II light harvesting complex gene B1B2	[more]
AT2G34430.1	1.7e-135	87.31	light-harvesting chlorophyll-protein complex II subunit B1	[more]

BLAST of CmoCh20G002870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112876\|ref\|XP_008456347.1\|	3.9e-150	97.38	PREDICTED: chlorophyll a-b binding protein of LHCII type 1 [Cucumis melo]	[more]
gi\|449455992\|ref\|XP_004145734.1\|	1.1e-149	97.00	PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Cucumis sativus...	[more]
gi\|94404555\|gb\|ABF17940.1\|	1.1e-147	95.13	putative chloroplast chlorophyll a/b-binding protein [Carya cathayensis]	[more]
gi\|692110637\|gb\|AIR93785.1\|	1.3e-145	93.26	chloroplast light harvesting chlorophyll A/B binding protein [Kalanchoe fedtsche...	[more]
gi\|695019019\|ref\|XP_009396492.1\|	2.2e-145	93.21	PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Musa acuminata ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0009765	photosynthesis, light harvesting

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G002870.1	CmoCh20G002870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..267 score: 2.3E
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 67..233 score: 1.9
IPR023329	Chlorophyll a/b binding protein domain	GENE3D	G3DSA:1.10.3460.10		coord: 60..259 score: 1.2
IPR023329	Chlorophyll a/b binding protein domain	unknown	SSF103511	Chlorophyll a-b binding protein	coord: 50..264 score: 1.83
None	No IPR available	PANTHER	PTHR21649:SF26	CHLOROPHYLL A-B BINDING PROTEIN 1, CHLOROPLASTIC-RELATED	coord: 1..267 score: 2.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh20G002870	Cucsa.118220	Cucumber (Gy14) v1	cgycmoB0296
CmoCh20G002870	CmaCh02G000360	Cucurbita maxima (Rimu)	cmacmoB613
CmoCh20G002870	Cla013483	Watermelon (97103) v1	cmowmB513
CmoCh20G002870	Csa6G139750	Cucumber (Chinese Long) v2	cmocuB553
CmoCh20G002870	MELO3C019677	Melon (DHL92) v3.5.1	cmomeB494
CmoCh20G002870	ClCG02G018440	Watermelon (Charleston Gray)	cmowcgB479
CmoCh20G002870	CSPI06G11360	Wild cucumber (PI 183967)	cmocpiB558
CmoCh20G002870	Lsi10G015370	Bottle gourd (USVL1VR-Ls)	cmolsiB490
CmoCh20G002870	Cp4.1LG16g07160	Cucurbita pepo (Zucchini)	cmocpeB517
CmoCh20G002870	MELO3C019677.2	Melon (DHL92) v3.6.1	cmomedB557
CmoCh20G002870	CsaV3_6G013800	Cucumber (Chinese Long) v3	cmocucB0660
CmoCh20G002870	Cla97C02G044270	Watermelon (97103) v2	cmowmbB545
CmoCh20G002870	Bhi10G000757	Wax gourd	cmowgoB0686

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh20G002870	CmoCh02G000360	Cucurbita moschata (Rifu)	cmocmoB411
CmoCh20G002870	CmoCh03G013760	Cucurbita moschata (Rifu)	cmocmoB418

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh20G002870	Cucumber (Chinese Long) v3	cmocucB0657
CmoCh20G002870	Cucumber (Chinese Long) v3	cmocucB0670
CmoCh20G002870	Watermelon (97103) v2	cmowmbB573
CmoCh20G002870	Wax gourd	cmowgoB0676
CmoCh20G002870	Cucurbita moschata (Rifu)	cmocmoB114
CmoCh20G002870	Cucurbita moschata (Rifu)	cmocmoB380
CmoCh20G002870	Cucumber (Gy14) v1	cgycmoB0667
CmoCh20G002870	Cucurbita maxima (Rimu)	cmacmoB150
CmoCh20G002870	Cucurbita maxima (Rimu)	cmacmoB514
CmoCh20G002870	Cucurbita maxima (Rimu)	cmacmoB550
CmoCh20G002870	Wild cucumber (PI 183967)	cmocpiB566
CmoCh20G002870	Cucumber (Chinese Long) v2	cmocuB560
CmoCh20G002870	Melon (DHL92) v3.5.1	cmomeB507
CmoCh20G002870	Watermelon (Charleston Gray)	cmowcgB471
CmoCh20G002870	Watermelon (97103) v1	cmowmB501
CmoCh20G002870	Cucurbita pepo (Zucchini)	cmocpeB512
CmoCh20G002870	Cucurbita pepo (Zucchini)	cmocpeB527
CmoCh20G002870	Cucurbita pepo (Zucchini)	cmocpeB524
CmoCh20G002870	Bottle gourd (USVL1VR-Ls)	cmolsiB497
CmoCh20G002870	Cucumber (Gy14) v2	cgybcmoB774
CmoCh20G002870	Cucumber (Gy14) v2	cgybcmoB778
CmoCh20G002870	Cucumber (Gy14) v2	cgybcmoB936
CmoCh20G002870	Melon (DHL92) v3.6.1	cmomedB581
CmoCh20G002870	Silver-seed gourd	carcmoB0042
CmoCh20G002870	Silver-seed gourd	carcmoB0464
CmoCh20G002870	Silver-seed gourd	carcmoB0533
CmoCh20G002870	Silver-seed gourd	carcmoB0724