CmoCh19G009560 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh19G009560
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTranslation initiation factor SUI1 family protein
LocationCmo_Chr19 : 8721835 .. 8724266 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTAAAAAAATAAATAGGAGAAAAACCAAAACCGACTGTAATCGATATAATAGAGCTTTGTGTGGCTTGCATAATTTCTCTCTCGCATTAAAACTTCATTGACCTTGAAACCTTGGTGTTTCAGGTCTCTTCGTCTTTGGATTCACAGCTTTTTCTCCCGGTAAATTTTTGTTCATCTCTGTTTCTTTCATGTTAATCGATGCATAATTTTCTTTTCCGTTTCTTTCTTTATTTATTTCTTCTCGAGCATTTTCGATTTATCTATCTGGGTTAGGGTTTCTTTTTCTGCGTGTATTTTCTTTTTTTTTTTTGTGCCCGGATCGAAGCGCTAGATCTGTTAGTGTTTTGGGATGTAAAAGTTTCGTTGTTTGATTGTTATTCTCTCTGATCAAGCGTGTTTCAGTCTTTTAATTAACTGATCCCAATATTTGAATCCCGAGTCTACTCTCTCTCCCCGTTGCGGCTGCTTTGATATTGTGTCTCTATTTTTTGTTTGGGGGGTGGGGGTCTGTGTTCTTGGAAAGATATTGACATGATAACTGCTATCTAATTTAAAGAAACAAAAGATATATGATTTATGTTCCAAAGACAGAGTTGGTTCTTTCGTTCGTGGAGAAAAAGCAGATAGATACTATCCTTTCATAATTGTTTGATCCCGTTGAAGAATATTTGGTTGTCTAATTGTTCGGCCATGGGTTTGGAGAAACAGAATGTGTAATTGTAAAAAAAAAAAAAAAAAAAAAAACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAAAAAAAAAAAAAAAAAAAAACCCTTAATGATTGTATTCTTTTCGTAATTTACAGTTTTTGTTCATTTGTTATTTTTCTATCTTTTTTATATGATGAATTTTTTAGTATTCGGTATCTTGATCGTTGATCAAGAAGTATTGAGAGGGTCATAGATTAAACGTGGGACTTGTAGCTATATGAGGACGAGGGATTGATTACTATTTATTATTAATATTTTTAACAAATCGATGCCTCTGTACCTTGTGGTTTCAACTCTGAATCTATTGTGTCTTGCAGATTCGAGCACAGCTTAATTGAGAGCAAATATCTTATTTGCTGGTTGGTTACCTGTGTTCTACTCCGGACAGCCAAGTTTCATGTCTGAATTCAACGTGCAGATTCCATCTGCTTTTGGTAACTTGTCAAGTCCCTAATCGATTTCGTAACTTGTGTTGCAGTAGAAGCCTATATATTTGTTTCAAAATTAATCAATATTTTGGTGGTTAGACCCATTTGCTGATGCAAATGCTGAGGACTCGGGAGCTGGGGCTAAAGAGTACGTTCATGTGCGCATACAGCAACGTAACGGGAGAAAAAGCCTGACAACTGTCCAAGGATTGAAGAAGGAGTTTAGTTATAACAAGATACTCAAGGATCTGAAGAAGGAATTCTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGACAGGTCAGTTCTCTCACCCTAAATGAATAGCATTGAGGCCCTCCTTTTTTTCATTGTTGATGCACTTATCATTTGTTCGAAAACTATTTTACCGGTGGTGATATGCAATTTAGCTGTTGTTTTCTGTGTAAAGCAGCTGGTCGATTGTGTATTTATGTTTGATTAGGGTATTATTAACAAGAACCCAGAGGGTTTTATCGGGTTATTTGCAATTTGAGAGAATCATACAATGCCACAATTAATATCATCGATTGTTGTAATTGGCTCCAGGTTATACAACTTCAGGGAGACCAAAGAAAGAATGTGTCCACCTTCCTTGTGCAGGTAAGTAACCAAGGTCTATACGTAGTTTGTGTCAATGGTTTATGTTTTCGGCAGCAGTTTTCGATATGATCACCGTTTTTCTGGATCAATAGGCTGGCATTGTGAAGAAGGAGAACATCAAGATTCACGGTTTCTGAAGATCATCAGCAGGATCGAATTCAATTGCTATTTACAGCAGCTTAACTAGTGGACATTATATAGCTTTTCTTTTAGAATTTGAAGAGTGCGCGTTACAACTCTTGGTCCATGTATGTTTTCTTTGCTTCATTATGCACTTGTTATGGATCATCGGACCCTTTTAATTAATGATACGCTT

mRNA sequence

GTAAAAAAATAAATAGGAGAAAAACCAAAACCGACTGTAATCGATATAATAGAGCTTTGTGTGGCTTGCATAATTTCTCTCTCGCATTAAAACTTCATTGACCTTGAAACCTTGGTGTTTCAGGTCTCTTCGTCTTTGGATTCACAGCTTTTTCTCCCGATTCGAGCACAGCTTAATTGAGAGCAAATATCTTATTTGCTGGTTGGTTACCTGTGTTCTACTCCGGACAGCCAAGTTTCATGTCTGAATTCAACGTGCAGATTCCATCTGCTTTTGACCCATTTGCTGATGCAAATGCTGAGGACTCGGGAGCTGGGGCTAAAGAGTACGTTCATGTGCGCATACAGCAACGTAACGGGAGAAAAAGCCTGACAACTGTCCAAGGATTGAAGAAGGAGTTTAGTTATAACAAGATACTCAAGGATCTGAAGAAGGAATTCTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGACAGGTTATACAACTTCAGGGAGACCAAAGAAAGAATGTGTCCACCTTCCTTGTGCAGGCTGGCATTGTGAAGAAGGAGAACATCAAGATTCACGGTTTCTGAAGATCATCAGCAGGATCGAATTCAATTGCTATTTACAGCAGCTTAACTAGTGGACATTATATAGCTTTTCTTTTAGAATTTGAAGAGTGCGCGTTACAACTCTTGGTCCATGTATGTTTTCTTTGCTTCATTATGCACTTGTTATGGATCATCGGACCCTTTTAATTAATGATACGCTT

Coding sequence (CDS)

ATGTCTGAATTCAACGTGCAGATTCCATCTGCTTTTGACCCATTTGCTGATGCAAATGCTGAGGACTCGGGAGCTGGGGCTAAAGAGTACGTTCATGTGCGCATACAGCAACGTAACGGGAGAAAAAGCCTGACAACTGTCCAAGGATTGAAGAAGGAGTTTAGTTATAACAAGATACTCAAGGATCTGAAGAAGGAATTCTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGACAGGTTATACAACTTCAGGGAGACCAAAGAAAGAATGTGTCCACCTTCCTTGTGCAGGCTGGCATTGTGAAGAAGGAGAACATCAAGATTCACGGTTTCTGA
Homology
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BLAST of CmoCh19G009560 vs. Swiss-Prot
Match: SUI1_SALBA (Protein translation factor SUI1 homolog OS=Salix bakko PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 3.8e-54
Identity = 102/113 (90.27%), Postives = 110/113 (97.35%), Query Frame = 1 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEF+  IP+AFDPFA+ANAEDSGAG K+YVHVR+QQRNGRKSLTTVQGLKK++SYNKIL
Sbjct: 1   MSEFDNAIPTAFDPFAEANAEDSGAGTKDYVHVRVQQRNGRKSLTTVQGLKKDYSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS+FLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSSFLVQAGIVKKENIKIHGF 113

[Close]
BLAST of CmoCh19G009560 vs. Swiss-Prot
Match: SUI12_ARATH (Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana GN=At1g54290 PE=3 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 8.4e-54
Identity = 100/113 (88.50%), Postives = 109/113 (96.46%), Query Frame = 1 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MS+  VQ+P+AFDPFADANAEDSGAG KEYVH+R+QQRNGRKSLTTVQGLKKE+SY+KIL
Sbjct: 1   MSDLEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+NIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]
BLAST of CmoCh19G009560 vs. Swiss-Prot
Match: SUI11_ARATH (Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana GN=At4g27130 PE=1 SV=2)

HSP 1 Score: 209.5 bits (532), Expect = 1.9e-53
Identity = 100/113 (88.50%), Postives = 108/113 (95.58%), Query Frame = 1 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSE + Q+P+AFDPFADANAEDSGAG KEYVH+R+QQRNGRKSLTTVQGLKKE+SY KIL
Sbjct: 1   MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+NIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]
BLAST of CmoCh19G009560 vs. Swiss-Prot
Match: SUI1_BRAOL (Protein translation factor SUI1 homolog OS=Brassica oleracea PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.1e-52
Identity = 98/113 (86.73%), Postives = 108/113 (95.58%), Query Frame = 1 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSE + Q+P+AFDPFADANAEDSGAG KEYVH+R+QQRNGRKSLTTVQGLKKE+SY KIL
Sbjct: 1   MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK++I+IHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDDIQIHGF 113

[Close]
BLAST of CmoCh19G009560 vs. Swiss-Prot
Match: SUI1_ORYSJ (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.1e-52
Identity = 102/115 (88.70%), Postives = 110/115 (95.65%), Query Frame = 1 

Query: 1   MSEFNVQIPSAFDPFADANAEDSG--AGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNK 60
           MS+ ++QIP+AFDPFA+ANA DSG  AG+K+YVHVRIQQRNGRKSLTTVQGLKKEFSYNK
Sbjct: 1   MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNK 60

Query: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKE+IKIHGF
Sbjct: 61  ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115

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BLAST of CmoCh19G009560 vs. TrEMBL
Match: A0A0A0K1M6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G044260 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 4.3e-57
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

[Close]
BLAST of CmoCh19G009560 vs. TrEMBL
Match: A0A0B0PFP0_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_10557 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 5.3e-55
Identity = 108/113 (95.58%), Postives = 112/113 (99.12%), Query Frame = 1 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MS+ +VQIP+AFDPFADANAEDSGAGAKEYVH+RIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSDLDVQIPTAFDPFADANAEDSGAGAKEYVHIRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

[Close]
BLAST of CmoCh19G009560 vs. TrEMBL
Match: A0A0D2V773_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G314200 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 5.3e-55
Identity = 108/113 (95.58%), Postives = 112/113 (99.12%), Query Frame = 1 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MS+ +VQIP+AFDPFADANAEDSGAGAKEYVH+RIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSDLDVQIPTAFDPFADANAEDSGAGAKEYVHIRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

[Close]
BLAST of CmoCh19G009560 vs. TrEMBL
Match: A0A0B0Q0B7_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_00215 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 9.0e-55
Identity = 106/113 (93.81%), Postives = 112/113 (99.12%), Query Frame = 1 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MS+ +VQ+P+AFDPFADANAEDSGAGAKEYVH+R+QQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSDLDVQVPTAFDPFADANAEDSGAGAKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

[Close]
BLAST of CmoCh19G009560 vs. TrEMBL
Match: A0A0D2U0T7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G426400 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 9.0e-55
Identity = 106/113 (93.81%), Postives = 112/113 (99.12%), Query Frame = 1 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MS+ +VQ+P+AFDPFADANAEDSGAGAKEYVH+R+QQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 101 MSDLDVQVPTAFDPFADANAEDSGAGAKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKIL 160

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 161 KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 213

[Close]
BLAST of CmoCh19G009560 vs. TAIR10
Match: AT1G54290.1 (AT1G54290.1 Translation initiation factor SUI1 family protein)

HSP 1 Score: 210.7 bits (535), Expect = 4.7e-55
Identity = 100/113 (88.50%), Postives = 109/113 (96.46%), Query Frame = 1 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MS+  VQ+P+AFDPFADANAEDSGAG KEYVH+R+QQRNGRKSLTTVQGLKKE+SY+KIL
Sbjct: 1   MSDLEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+NIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]
BLAST of CmoCh19G009560 vs. TAIR10
Match: AT4G27130.1 (AT4G27130.1 Translation initiation factor SUI1 family protein)

HSP 1 Score: 209.5 bits (532), Expect = 1.1e-54
Identity = 100/113 (88.50%), Postives = 108/113 (95.58%), Query Frame = 1 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSE + Q+P+AFDPFADANAEDSGAG KEYVH+R+QQRNGRKSLTTVQGLKKE+SY KIL
Sbjct: 1   MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+NIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]
BLAST of CmoCh19G009560 vs. TAIR10
Match: AT5G54760.1 (AT5G54760.1 Translation initiation factor SUI1 family protein)

HSP 1 Score: 208.0 bits (528), Expect = 3.1e-54
Identity = 99/113 (87.61%), Postives = 107/113 (94.69%), Query Frame = 1 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSE + Q+P+AFDPFADAN EDSGAG KEYVH+R+QQRNGRKSLTTVQGLKKE+SY KIL
Sbjct: 1   MSELDSQVPTAFDPFADANVEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+NIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

[Close]
BLAST of CmoCh19G009560 vs. TAIR10
Match: AT5G54940.1 (AT5G54940.1 Translation initiation factor SUI1 family protein)

HSP 1 Score: 172.9 bits (437), Expect = 1.1e-43
Identity = 83/113 (73.45%), Postives = 97/113 (85.84%), Query Frame = 1 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           M E ++QIPSA+DPFA+A   D+  GAKE +H+RIQQRNG+KSLTTVQGLKKE+SY +IL
Sbjct: 1   MVELDIQIPSAYDPFAEAKDSDA-PGAKENIHIRIQQRNGKKSLTTVQGLKKEYSYERIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKK+FCCNG VVQD ELG++IQLQGDQRK VS FLVQ GI KK+ IKIHGF
Sbjct: 61  KDLKKDFCCNGNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF 112

[Close]
BLAST of CmoCh19G009560 vs. NCBI nr
Match: gi|449453488|ref|XP_004144489.1| (PREDICTED: protein translation factor SUI1 homolog [Cucumis sativus])

HSP 1 Score: 228.4 bits (581), Expect = 6.2e-57
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

[Close]
BLAST of CmoCh19G009560 vs. NCBI nr
Match: gi|823197828|ref|XP_012434403.1| (PREDICTED: protein translation factor SUI1 homolog 2-like [Gossypium raimondii])

HSP 1 Score: 221.5 bits (563), Expect = 7.6e-55
Identity = 108/113 (95.58%), Postives = 112/113 (99.12%), Query Frame = 1 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MS+ +VQIP+AFDPFADANAEDSGAGAKEYVH+RIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSDLDVQIPTAFDPFADANAEDSGAGAKEYVHIRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

[Close]
BLAST of CmoCh19G009560 vs. NCBI nr
Match: gi|763795623|gb|KJB62619.1| (hypothetical protein B456_009G426400 [Gossypium raimondii])

HSP 1 Score: 220.7 bits (561), Expect = 1.3e-54
Identity = 106/113 (93.81%), Postives = 112/113 (99.12%), Query Frame = 1 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MS+ +VQ+P+AFDPFADANAEDSGAGAKEYVH+R+QQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 101 MSDLDVQVPTAFDPFADANAEDSGAGAKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKIL 160

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 161 KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 213

[Close]
BLAST of CmoCh19G009560 vs. NCBI nr
Match: gi|1009128157|ref|XP_015881078.1| (PREDICTED: protein translation factor SUI1 homolog [Ziziphus jujuba])

HSP 1 Score: 220.7 bits (561), Expect = 1.3e-54
Identity = 109/113 (96.46%), Postives = 112/113 (99.12%), Query Frame = 1 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MSEF+ QIPSAFDPFADANAEDSGAG+KEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSEFDDQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKE+IKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKIHGF 113

[Close]
BLAST of CmoCh19G009560 vs. NCBI nr
Match: gi|823221670|ref|XP_012443533.1| (PREDICTED: protein translation factor SUI1 homolog 2 isoform X1 [Gossypium raimondii])

HSP 1 Score: 220.7 bits (561), Expect = 1.3e-54
Identity = 106/113 (93.81%), Postives = 112/113 (99.12%), Query Frame = 1 

Query: 1   MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 60
           MS+ +VQ+P+AFDPFADANAEDSGAGAKEYVH+R+QQRNGRKSLTTVQGLKKEFSYNKIL
Sbjct: 1   MSDLDVQVPTAFDPFADANAEDSGAGAKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKIL 60

Query: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 114
           KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF
Sbjct: 61  KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113

The following BLAST results are available for this feature:
BLAST of CmoCh19G009560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SUI1_SALBA3.8e-5490.27Protein translation factor SUI1 homolog OS=Salix bakko PE=3 SV=1[more]
SUI12_ARATH8.4e-5488.50Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana GN=At1g54290 P... [more]
SUI11_ARATH1.9e-5388.50Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana GN=At4g27130 P... [more]
SUI1_BRAOL2.1e-5286.73Protein translation factor SUI1 homolog OS=Brassica oleracea PE=3 SV=1[more]
SUI1_ORYSJ2.1e-5288.70Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 ... [more]
BLAST of CmoCh19G009560 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K1M6_CUCSA4.3e-57100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G044260 PE=4 SV=1[more]
A0A0B0PFP0_GOSAR5.3e-5595.58Uncharacterized protein OS=Gossypium arboreum GN=F383_10557 PE=4 SV=1[more]
A0A0D2V773_GOSRA5.3e-5595.58Uncharacterized protein OS=Gossypium raimondii GN=B456_007G314200 PE=4 SV=1[more]
A0A0B0Q0B7_GOSAR9.0e-5593.81Uncharacterized protein OS=Gossypium arboreum GN=F383_00215 PE=4 SV=1[more]
A0A0D2U0T7_GOSRA9.0e-5593.81Uncharacterized protein OS=Gossypium raimondii GN=B456_009G426400 PE=4 SV=1[more]
BLAST of CmoCh19G009560 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G54290.14.7e-5588.50 Translation initiation factor SUI1 family protein[more]
AT4G27130.11.1e-5488.50 Translation initiation factor SUI1 family protein[more]
AT5G54760.13.1e-5487.61 Translation initiation factor SUI1 family protein[more]
AT5G54940.11.1e-4373.45 Translation initiation factor SUI1 family protein[more]
BLAST of CmoCh19G009560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449453488|ref|XP_004144489.1|6.2e-57100.00PREDICTED: protein translation factor SUI1 homolog [Cucumis sativus][more]
gi|823197828|ref|XP_012434403.1|7.6e-5595.58PREDICTED: protein translation factor SUI1 homolog 2-like [Gossypium raimondii][more]
gi|763795623|gb|KJB62619.1|1.3e-5493.81hypothetical protein B456_009G426400 [Gossypium raimondii][more]
gi|1009128157|ref|XP_015881078.1|1.3e-5496.46PREDICTED: protein translation factor SUI1 homolog [Ziziphus jujuba][more]
gi|823221670|ref|XP_012443533.1|1.3e-5493.81PREDICTED: protein translation factor SUI1 homolog 2 isoform X1 [Gossypium raimo... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001950SUI1
IPR005874SUI1_euk
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006413 translational initiation
cellular_component GO:0005840 ribosome
molecular_function GO:0003743 translation initiation factor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G009560.1CmoCh19G009560.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001950Translation initiation factor SUI1GENE3DG3DSA:3.30.780.10coord: 4..113
score: 2.3
IPR001950Translation initiation factor SUI1PFAMPF01253SUI1coord: 28..102
score: 9.2
IPR001950Translation initiation factor SUI1PROFILEPS50296SUI1coord: 31..101
score: 24
IPR001950Translation initiation factor SUI1unknownSSF55159eIF1-likecoord: 4..113
score: 2.09
IPR005874Eukaryotic translation initiation factor SUI1PIRPIRSF004499Transl_init_SUI1_Eukcoord: 1..113
score: 2.7
IPR005874Eukaryotic translation initiation factor SUI1TIGRFAMsTIGR01160TIGR01160coord: 6..113
score: 2.2
NoneNo IPR availablePANTHERPTHR10388EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1coord: 1..113
score: 1.4
NoneNo IPR availablePANTHERPTHR10388:SF14SUBFAMILY NOT NAMEDcoord: 1..113
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh19G009560Wax gourdcmowgoB0653
CmoCh19G009560Wax gourdcmowgoB0663
CmoCh19G009560Wax gourdcmowgoB0667
CmoCh19G009560Cucurbita moschata (Rifu)cmocmoB108
CmoCh19G009560Cucurbita moschata (Rifu)cmocmoB177
CmoCh19G009560Cucurbita moschata (Rifu)cmocmoB381
CmoCh19G009560Cucurbita moschata (Rifu)cmocmoB389
CmoCh19G009560Cucurbita moschata (Rifu)cmocmoB394
CmoCh19G009560Cucurbita moschata (Rifu)cmocmoB400
CmoCh19G009560Cucumber (Gy14) v1cgycmoB0036
CmoCh19G009560Cucumber (Gy14) v1cgycmoB0109
CmoCh19G009560Cucumber (Gy14) v1cgycmoB0407
CmoCh19G009560Cucurbita maxima (Rimu)cmacmoB142
CmoCh19G009560Cucurbita maxima (Rimu)cmacmoB508
CmoCh19G009560Cucurbita maxima (Rimu)cmacmoB547
CmoCh19G009560Cucurbita maxima (Rimu)cmacmoB600
CmoCh19G009560Cucurbita maxima (Rimu)cmacmoB854
CmoCh19G009560Wild cucumber (PI 183967)cmocpiB498
CmoCh19G009560Wild cucumber (PI 183967)cmocpiB501
CmoCh19G009560Wild cucumber (PI 183967)cmocpiB517
CmoCh19G009560Wild cucumber (PI 183967)cmocpiB524
CmoCh19G009560Cucumber (Chinese Long) v2cmocuB491
CmoCh19G009560Cucumber (Chinese Long) v2cmocuB493
CmoCh19G009560Cucumber (Chinese Long) v2cmocuB518
CmoCh19G009560Melon (DHL92) v3.5.1cmomeB443
CmoCh19G009560Melon (DHL92) v3.5.1cmomeB452
CmoCh19G009560Melon (DHL92) v3.5.1cmomeB476
CmoCh19G009560Watermelon (Charleston Gray)cmowcgB460
CmoCh19G009560Watermelon (Charleston Gray)cmowcgB456
CmoCh19G009560Watermelon (Charleston Gray)cmowcgB459
CmoCh19G009560Watermelon (97103) v1cmowmB491
CmoCh19G009560Watermelon (97103) v1cmowmB492
CmoCh19G009560Watermelon (97103) v1cmowmB495
CmoCh19G009560Cucurbita pepo (Zucchini)cmocpeB481
CmoCh19G009560Cucurbita pepo (Zucchini)cmocpeB483
CmoCh19G009560Cucurbita pepo (Zucchini)cmocpeB492
CmoCh19G009560Cucurbita pepo (Zucchini)cmocpeB500
CmoCh19G009560Bottle gourd (USVL1VR-Ls)cmolsiB455
CmoCh19G009560Bottle gourd (USVL1VR-Ls)cmolsiB457
CmoCh19G009560Bottle gourd (USVL1VR-Ls)cmolsiB462
CmoCh19G009560Cucumber (Gy14) v2cgybcmoB204
CmoCh19G009560Cucumber (Gy14) v2cgybcmoB927
CmoCh19G009560Melon (DHL92) v3.6.1cmomedB521
CmoCh19G009560Melon (DHL92) v3.6.1cmomedB552
CmoCh19G009560Silver-seed gourdcarcmoB0040
CmoCh19G009560Silver-seed gourdcarcmoB0462
CmoCh19G009560Silver-seed gourdcarcmoB0884
CmoCh19G009560Silver-seed gourdcarcmoB0981
CmoCh19G009560Silver-seed gourdcarcmoB1183
CmoCh19G009560Cucumber (Chinese Long) v3cmocucB0588
CmoCh19G009560Cucumber (Chinese Long) v3cmocucB0592
CmoCh19G009560Cucumber (Chinese Long) v3cmocucB0614
CmoCh19G009560Cucumber (Chinese Long) v3cmocucB0622
CmoCh19G009560Watermelon (97103) v2cmowmbB501
CmoCh19G009560Watermelon (97103) v2cmowmbB512
CmoCh19G009560Watermelon (97103) v2cmowmbB513