CmoCh19G009280 (gene) Cucurbita moschata (Rifu)

NameCmoCh19G009280
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionMitogenic proteinase
LocationCmo_Chr19 : 8591959 .. 8592948 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGCAGCTCTCCCACATTTGGTTCGTTCATCAATTTCACCCACTTGCCTACCGAGTTACACCATCTCAACCTTCTCCTTATATCCACACAAGGTTTGTCTAAATTATACTACTCATTAATTTTGAAAAATCTCAAACTCTGGTTATCTCCCAACATCTATTAATTTTTCTAATCAATTCTATTTCAACTTTCAACTTAAGAGAAAAGATAGTATACAAAAAAAATGCAGACAGTAGAAAATATAGTATGCCAAAGTATGTAGACGGGACAGAAGATAGTATGCCAAAGTATGTAGACCTGAGAAAAGGAGATGTGACCTCAATAAAAAATCAATGTCACTCAGGTTGTTTTATTCTTATTAAGTTACCATAATAATAATAATATTTTTATTTTTATTCTTGTGCCGCCTCCTGTTGGATATATACTGGTATTGCTGCCATTCAATCCGTCTACAAAATAAAAAAAGTACAATTCATAGATCTCTCTACCAAGCAACTCATCCATCACTTTTAGCTACATCTGAATAGTGATGAAGGCGGCGATCCTGATATTGTGTTTCAATATGTAATGAAAACGCCAATATTTAGACAAAGTGATTATGGTAACAGGATAGTTAAAAGAGACCAGGTAAATATTTACTTCATTTAAATTGGTTTTAAATTTTTATTGTCATTGTTGATTTAAACTAACCCATGTCAATCTAATGTAATGTAGACTCTTCAAATACGAAGATTCCAATACTTGAGATTCGAAGAAGAACTAGACTTAATCATGGCTCTATACAGTGGACCTGTTTGCATCTTGATTGCTTCTAGTCACCACAACTTTGAAAGATACAGGGAGGTAAGATTCATTTTGTTATATTAATCAAAATTTATATATATACTTTTTATCTTTTAACATAGAATATTATTATCTACATTCAGGGTATATACCACGGTCCATTTGGATGGCAGTTGGATATACTCCTGACTATATTATCATAA

mRNA sequence

ATGACAGCAGCTCTCCCACATTTGGTTCGTTCATCAATTTCACCCACTTGCCTACCGAGTTACACCATCTCAACCTTCTCCTTATATCCACACAAGCTACATCTGAATAGTGATGAAGGCGGCGATCCTGATATTGTGTTTCAATATGTAATGAAAACGCCAATATTTAGACAAAGTGATTATGGTAACAGGATAGTTAAAAGAGACCAGACTCTTCAAATACGAAGATTCCAATACTTGAGATTCGAAGAAGAACTAGACTTAATCATGGCTCTATACAGTGGACCTGTTTGCATCTTGATTGCTTCTAGTCACCACAACTTTGAAAGATACAGGGAGGGTATATACCACGGTCCATTTGGATGGCAGTTGGATATACTCCTGACTATATTATCATAA

Coding sequence (CDS)

ATGACAGCAGCTCTCCCACATTTGGTTCGTTCATCAATTTCACCCACTTGCCTACCGAGTTACACCATCTCAACCTTCTCCTTATATCCACACAAGCTACATCTGAATAGTGATGAAGGCGGCGATCCTGATATTGTGTTTCAATATGTAATGAAAACGCCAATATTTAGACAAAGTGATTATGGTAACAGGATAGTTAAAAGAGACCAGACTCTTCAAATACGAAGATTCCAATACTTGAGATTCGAAGAAGAACTAGACTTAATCATGGCTCTATACAGTGGACCTGTTTGCATCTTGATTGCTTCTAGTCACCACAACTTTGAAAGATACAGGGAGGGTATATACCACGGTCCATTTGGATGGCAGTTGGATATACTCCTGACTATATTATCATAA
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000668Peptidase_C1A_C
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Molecular Function
TermDefinition
GO:0008234cysteine-type peptidase activity
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0005575 cellular_component
molecular_function GO:0008234 cysteine-type peptidase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G009280.1CmoCh19G009280.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000668Peptidase C1A, papain C-terminalPFAMPF00112Peptidase_C1coord: 39..118
score: 1.
NoneNo IPR availableGENE3DG3DSA:3.90.70.10coord: 36..121
score: 9.
NoneNo IPR availableunknownSSF54001Cysteine proteinasescoord: 28..123
score: 1.2

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None